ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf113i14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049025.1| Oryza sativa (japonica cultivar-group) Os01g0229800 (Os01g0229800) mRNA, complete cds Length = 912 Score = 333 bits (168), Expect = 9e-88 Identities = 288/328 (87%) Strand = Plus / Plus Query: 295 gacatccaagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtc 354 ||||||||||| |||||||||||||| || |||| | ||||||| ||| ||||||||| Sbjct: 61 gacatccaaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtc 120 Query: 355 atgacaggactgagcatgctcaacgctggtctgaccacccagatgctgctgagcctgttc 414 |||||||| || |||||||| || ||||| ||||| |||||| ||||||||||||||||| Sbjct: 121 atgacagggcttagcatgctgaatgctgggctgacgacccagctgctgctgagcctgttc 180 Query: 415 cgggtgaagggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatc 474 |||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||| Sbjct: 181 agggtgaagggcatcgtgcactggggcatcgccggcaacgccgacgagggcctccagatc 240 Query: 475 ggcgacgtcaccatccccgagtactgggcccacgtctccctctggaactggcagcgattc 534 ||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||| | | Sbjct: 241 ggcgacgtcaccatcccggagcactgggcgcacctctccctctggaactggcagcgctac 300 Query: 535 ggcgacggcaaggacaacgagctaccgctggaggccgccggcgactacactcgggagtac 594 ||||||||| ||| |||||||| ||||| |||||||||||||||||||| || || | Sbjct: 301 ggcgacggcccggagaacgagctgccgctcgaggccgccggcgactacacccgcgacctc 360 Query: 595 ggcgccctcaacttctcggactacaccg 622 ||| |||||||||||| |||||||||| Sbjct: 361 ggcttcctcaacttctccgactacaccg 388 Score = 295 bits (149), Expect = 2e-76 Identities = 380/457 (83%) Strand = Plus / Plus Query: 658 ctcaacagcatctggtaccagccggaggagatcttccccaagtccggcgagccggaggtg 717 |||||||||||||||| |||||| ||||||||||||||| |||||| |||||||| | Sbjct: 412 ctcaacagcatctggttccagcccgaggagatcttccccgtctccggcaagccggagcag 471 Query: 718 cggcagcacgcgttctgggtgcccgctagcaagcggtactacgcgctggcgaagaagctg 777 || || ||||| |||||||| |||| ||| || |||| | | || || ||||||| Sbjct: 472 cgccaacacgccttctgggtccccgtcagctcccgctacttctccctcgctgagaagcta 531 Query: 778 gagggcatggagctgccggcgtgcgtgaacgccacgacgtgcctgccccgcgcgccgcgg 837 ||||| |||||||||||||||||||||||||| |||||||||||||| || |||||| || Sbjct: 532 gaggggatggagctgccggcgtgcgtgaacgcgacgacgtgcctgccgcgggcgccgagg 591 Query: 838 gtcacccgagtcagcaagggctgcagcgccaacgtgttcctggacaacgccgagtaccgc 897 || || | || || | ||| |||||||||||||||||||| |||||||||| ||||| Sbjct: 592 gtgacgagggtgaggagggggtgcagcgccaacgtgttcctcgacaacgccgcctaccgt 651 Query: 898 cagttcctccgcaagcagttcgggtgcacccccgttgagatggagagcgctgccgtggcc 957 |||||||| || ||||||||||||| || || |||||||||||||| |||||||| Sbjct: 652 cagttcctgcgggccaagttcgggtgcacgccggtggagatggagagcgccgccgtggcg 711 Query: 958 ctcgtggcgcacacgcagggggtgccgttcctcaccatccgctcgctctccgacctcgcc 1017 |||||||||||| ||| | || |||||||||||||||||||| |||||||||||||| Sbjct: 712 ctcgtggcgcaccagcacgccgtcccgttcctcaccatccgctccctctccgacctcgct 771 Query: 1018 gggggaggctccgcgctcgggaacgaggccagcaccttcatcgacatcgccgccaagaac 1077 || || |||||| ||||||| ||||||||| || ||| ||| |||||||||| ||||| Sbjct: 772 ggcggcggctcctcgctcggcaacgaggccggcgagttcctcgccatcgccgcccagaac 831 Query: 1078 gccgtccaagtcatgctcaagttcgtgccgctgctcg 1114 |||||| | ||||||||||| ||||| ||||| |||| Sbjct: 832 gccgtcgacgtcatgctcaacttcgtcccgctcctcg 868
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 270 bits (136), Expect = 1e-68 Identities = 217/244 (88%) Strand = Plus / Minus Query: 379 gctggtctgaccacccagatgctgctgagcctgttccgggtgaagggcatcgtccactgg 438 ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 7185808 gctgggctgacgacccagctgctgctgagcctgttcagggtgaagggcatcgtgcactgg 7185749 Query: 439 ggcatcgctggcaacgccaacgaggacctccagatcggcgacgtcaccatccccgagtac 498 |||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||| || Sbjct: 7185748 ggcatcgccggcaacgccgacgagggcctccagatcggcgacgtcaccatcccggagcac 7185689 Query: 499 tgggcccacgtctccctctggaactggcagcgattcggcgacggcaaggacaacgagcta 558 ||||| ||| |||||||||||||||||||||| | |||||||||| ||| |||||||| Sbjct: 7185688 tgggcgcacctctccctctggaactggcagcgctacggcgacggcccggagaacgagctg 7185629 Query: 559 ccgctggaggccgccggcgactacactcgggagtacggcgccctcaacttctcggactac 618 ||||| |||||||||||||||||||| || || |||| |||||||||||| |||||| Sbjct: 7185628 ccgctcgaggccgccggcgactacacccgcgacctcggcttcctcaacttctccgactac 7185569 Query: 619 accg 622 |||| Sbjct: 7185568 accg 7185565 Score = 254 bits (128), Expect = 7e-64 Identities = 284/336 (84%) Strand = Plus / Minus Query: 779 agggcatggagctgccggcgtgcgtgaacgccacgacgtgcctgccccgcgcgccgcggg 838 |||| |||||||||||||||||||||||||| |||||||||||||| || |||||| ||| Sbjct: 7184862 aggggatggagctgccggcgtgcgtgaacgcgacgacgtgcctgccgcgggcgccgaggg 7184803 Query: 839 tcacccgagtcagcaagggctgcagcgccaacgtgttcctggacaacgccgagtaccgcc 898 | || | || || | ||| |||||||||||||||||||| |||||||||| ||||| | Sbjct: 7184802 tgacgagggtgaggagggggtgcagcgccaacgtgttcctcgacaacgccgcctaccgtc 7184743 Query: 899 agttcctccgcaagcagttcgggtgcacccccgttgagatggagagcgctgccgtggccc 958 ||||||| || ||||||||||||| || || |||||||||||||| |||||||| | Sbjct: 7184742 agttcctgcgggccaagttcgggtgcacgccggtggagatggagagcgccgccgtggcgc 7184683 Query: 959 tcgtggcgcacacgcagggggtgccgttcctcaccatccgctcgctctccgacctcgccg 1018 ||||||||||| ||| | || |||||||||||||||||||| |||||||||||||| | Sbjct: 7184682 tcgtggcgcaccagcacgccgtcccgttcctcaccatccgctccctctccgacctcgctg 7184623 Query: 1019 ggggaggctccgcgctcgggaacgaggccagcaccttcatcgacatcgccgccaagaacg 1078 | || |||||| ||||||| ||||||||| || ||| ||| |||||||||| |||||| Sbjct: 7184622 gcggcggctcctcgctcggcaacgaggccggcgagttcctcgccatcgccgcccagaacg 7184563 Query: 1079 ccgtccaagtcatgctcaagttcgtgccgctgctcg 1114 ||||| | ||||||||||| ||||| ||||| |||| Sbjct: 7184562 ccgtcgacgtcatgctcaacttcgtcccgctcctcg 7184527 Score = 73.8 bits (37), Expect = 1e-09 Identities = 73/85 (85%) Strand = Plus / Minus Query: 658 ctcaacagcatctggtaccagccggaggagatcttccccaagtccggcgagccggaggtg 717 |||||||||||||||| |||||| ||||||||||||||| |||||| |||||||| | Sbjct: 7185541 ctcaacagcatctggttccagcccgaggagatcttccccgtctccggcaagccggagcag 7185482 Query: 718 cggcagcacgcgttctgggtgcccg 742 || || ||||| |||||||| |||| Sbjct: 7185481 cgccaacacgccttctgggtccccg 7185457 Score = 73.8 bits (37), Expect = 1e-09 Identities = 97/115 (84%), Gaps = 4/115 (3%) Strand = Plus / Minus Query: 130 atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 189 ||||| |||||||||||||||| |||| | |||||||||| | ||| |||| |||||| Sbjct: 7187148 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 7187089 Query: 190 aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 241 ||| || | |||||||||||| ||| |||||||||||||| |||||||||||| Sbjct: 7187088 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 7187035 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Minus Query: 302 aagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatgacag 361 |||| |||||||||||||| || |||| | ||||||| ||| |||||||||||||||| Sbjct: 7186079 aaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtcatgacag 7186020 Query: 362 gactgagcatg 372 | || |||||| Sbjct: 7186019 ggcttagcatg 7186009
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 270 bits (136), Expect = 1e-68 Identities = 217/244 (88%) Strand = Plus / Minus Query: 379 gctggtctgaccacccagatgctgctgagcctgttccgggtgaagggcatcgtccactgg 438 ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 80456 gctgggctgacgacccagctgctgctgagcctgttcagggtgaagggcatcgtgcactgg 80397 Query: 439 ggcatcgctggcaacgccaacgaggacctccagatcggcgacgtcaccatccccgagtac 498 |||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||| || Sbjct: 80396 ggcatcgccggcaacgccgacgagggcctccagatcggcgacgtcaccatcccggagcac 80337 Query: 499 tgggcccacgtctccctctggaactggcagcgattcggcgacggcaaggacaacgagcta 558 ||||| ||| |||||||||||||||||||||| | |||||||||| ||| |||||||| Sbjct: 80336 tgggcgcacctctccctctggaactggcagcgctacggcgacggcccggagaacgagctg 80277 Query: 559 ccgctggaggccgccggcgactacactcgggagtacggcgccctcaacttctcggactac 618 ||||| |||||||||||||||||||| || || |||| |||||||||||| |||||| Sbjct: 80276 ccgctcgaggccgccggcgactacacccgcgacctcggcttcctcaacttctccgactac 80217 Query: 619 accg 622 |||| Sbjct: 80216 accg 80213 Score = 254 bits (128), Expect = 7e-64 Identities = 284/336 (84%) Strand = Plus / Minus Query: 779 agggcatggagctgccggcgtgcgtgaacgccacgacgtgcctgccccgcgcgccgcggg 838 |||| |||||||||||||||||||||||||| |||||||||||||| || |||||| ||| Sbjct: 79510 aggggatggagctgccggcgtgcgtgaacgcgacgacgtgcctgccgcgggcgccgaggg 79451 Query: 839 tcacccgagtcagcaagggctgcagcgccaacgtgttcctggacaacgccgagtaccgcc 898 | || | || || | ||| |||||||||||||||||||| |||||||||| ||||| | Sbjct: 79450 tgacgagggtgaggagggggtgcagcgccaacgtgttcctcgacaacgccgcctaccgtc 79391 Query: 899 agttcctccgcaagcagttcgggtgcacccccgttgagatggagagcgctgccgtggccc 958 ||||||| || ||||||||||||| || || |||||||||||||| |||||||| | Sbjct: 79390 agttcctgcgggccaagttcgggtgcacgccggtggagatggagagcgccgccgtggcgc 79331 Query: 959 tcgtggcgcacacgcagggggtgccgttcctcaccatccgctcgctctccgacctcgccg 1018 ||||||||||| ||| | || |||||||||||||||||||| |||||||||||||| | Sbjct: 79330 tcgtggcgcaccagcacgccgtcccgttcctcaccatccgctccctctccgacctcgctg 79271 Query: 1019 ggggaggctccgcgctcgggaacgaggccagcaccttcatcgacatcgccgccaagaacg 1078 | || |||||| ||||||| ||||||||| || ||| ||| |||||||||| |||||| Sbjct: 79270 gcggcggctcctcgctcggcaacgaggccggcgagttcctcgccatcgccgcccagaacg 79211 Query: 1079 ccgtccaagtcatgctcaagttcgtgccgctgctcg 1114 ||||| | ||||||||||| ||||| ||||| |||| Sbjct: 79210 ccgtcgacgtcatgctcaacttcgtcccgctcctcg 79175 Score = 73.8 bits (37), Expect = 1e-09 Identities = 73/85 (85%) Strand = Plus / Minus Query: 658 ctcaacagcatctggtaccagccggaggagatcttccccaagtccggcgagccggaggtg 717 |||||||||||||||| |||||| ||||||||||||||| |||||| |||||||| | Sbjct: 80189 ctcaacagcatctggttccagcccgaggagatcttccccgtctccggcaagccggagcag 80130 Query: 718 cggcagcacgcgttctgggtgcccg 742 || || ||||| |||||||| |||| Sbjct: 80129 cgccaacacgccttctgggtccccg 80105 Score = 73.8 bits (37), Expect = 1e-09 Identities = 97/115 (84%), Gaps = 4/115 (3%) Strand = Plus / Minus Query: 130 atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 189 ||||| |||||||||||||||| |||| | |||||||||| | ||| |||| |||||| Sbjct: 81796 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 81737 Query: 190 aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 241 ||| || | |||||||||||| ||| |||||||||||||| |||||||||||| Sbjct: 81736 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 81683 Score = 54.0 bits (27), Expect = 0.001 Identities = 60/71 (84%) Strand = Plus / Minus Query: 302 aagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatgacag 361 |||| |||||||||||||| || |||| | ||||||| ||| |||||||||||||||| Sbjct: 80727 aaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtcatgacag 80668 Query: 362 gactgagcatg 372 | || |||||| Sbjct: 80667 ggcttagcatg 80657
>emb|CT831027.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA054G05, full insert sequence Length = 1436 Score = 89.7 bits (45), Expect = 2e-14 Identities = 159/197 (80%) Strand = Plus / Plus Query: 422 agggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatcggcgacg 481 ||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||| Sbjct: 517 agggcatcgtccacttcggcatcgccggcaacgccgaccccgacctccacatcggcgacg 576 Query: 482 tcaccatccccgagtactgggcccacgtctccctctggaactggcagcgattcggcgacg 541 ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||| | Sbjct: 577 tcaccgtcccccgctactgggcgcacaccggactctggaactggcagcggtacggcgatg 636 Query: 542 gcaaggacaacgagctaccgctggaggccgccggcgactacactcgggagtacggcgccc 601 | ||| || ||||| |||||||| || ||||||||||| || ||||||| || | Sbjct: 637 ggccggagaaggagctcgcgctggagtccaatggcgactacacgaggaagtacggggcgc 696 Query: 602 tcaacttctcggactac 618 |||||||||| |||||| Sbjct: 697 tcaacttctccgactac 713 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 972 gcagggggtgccgttcctcaccatccgctcgctctccgacctcgccgggggaggctccgc 1031 |||||||| ||||||| || |||| || |||||||||||||||||||| || |||||||| Sbjct: 1079 gcagggggcgccgttcatcgccatacggtcgctctccgacctcgccggcggcggctccgc 1138 Query: 1032 g 1032 | Sbjct: 1139 g 1139
>ref|NM_001061505.1| Oryza sativa (japonica cultivar-group) Os05g0228000 (Os05g0228000) mRNA, complete cds Length = 1468 Score = 89.7 bits (45), Expect = 2e-14 Identities = 159/197 (80%) Strand = Plus / Plus Query: 422 agggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatcggcgacg 481 ||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||| Sbjct: 601 agggcatcgtccacttcggcatcgccggcaacgccgaccccgacctccacatcggcgacg 660 Query: 482 tcaccatccccgagtactgggcccacgtctccctctggaactggcagcgattcggcgacg 541 ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||| | Sbjct: 661 tcaccgtcccccgctactgggcgcacaccggactctggaactggcagcggtacggcgatg 720 Query: 542 gcaaggacaacgagctaccgctggaggccgccggcgactacactcgggagtacggcgccc 601 | ||| || ||||| |||||||| || ||||||||||| || ||||||| || | Sbjct: 721 ggccggagaaggagctcgcgctggagtccaatggcgactacacgaggaagtacggggcgc 780 Query: 602 tcaacttctcggactac 618 |||||||||| |||||| Sbjct: 781 tcaacttctccgactac 797 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 972 gcagggggtgccgttcctcaccatccgctcgctctccgacctcgccgggggaggctccgc 1031 |||||||| ||||||| || |||| || |||||||||||||||||||| || |||||||| Sbjct: 1163 gcagggggcgccgttcatcgccatacggtcgctctccgacctcgccggcggcggctccgc 1222 Query: 1032 g 1032 | Sbjct: 1223 g 1223
>dbj|AK101642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055L05, full insert sequence Length = 1387 Score = 89.7 bits (45), Expect = 2e-14 Identities = 159/197 (80%) Strand = Plus / Plus Query: 422 agggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatcggcgacg 481 ||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||| Sbjct: 520 agggcatcgtccacttcggcatcgccggcaacgccgaccccgacctccacatcggcgacg 579 Query: 482 tcaccatccccgagtactgggcccacgtctccctctggaactggcagcgattcggcgacg 541 ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||| | Sbjct: 580 tcaccgtcccccgctactgggcgcacaccggactctggaactggcagcggtacggcgatg 639 Query: 542 gcaaggacaacgagctaccgctggaggccgccggcgactacactcgggagtacggcgccc 601 | ||| || ||||| |||||||| || ||||||||||| || ||||||| || | Sbjct: 640 ggccggagaaggagctcgcgctggagtccaatggcgactacacgaggaagtacggggcgc 699 Query: 602 tcaacttctcggactac 618 |||||||||| |||||| Sbjct: 700 tcaacttctccgactac 716 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 972 gcagggggtgccgttcctcaccatccgctcgctctccgacctcgccgggggaggctccgc 1031 |||||||| ||||||| || |||| || |||||||||||||||||||| || |||||||| Sbjct: 1082 gcagggggcgccgttcatcgccatacggtcgctctccgacctcgccggcggcggctccgc 1141 Query: 1032 g 1032 | Sbjct: 1142 g 1142
>dbj|AK064229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H04, full insert sequence Length = 1470 Score = 89.7 bits (45), Expect = 2e-14 Identities = 159/197 (80%) Strand = Plus / Plus Query: 422 agggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatcggcgacg 481 ||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||| Sbjct: 603 agggcatcgtccacttcggcatcgccggcaacgccgaccccgacctccacatcggcgacg 662 Query: 482 tcaccatccccgagtactgggcccacgtctccctctggaactggcagcgattcggcgacg 541 ||||| ||||| |||||||| ||| | ||||||||||||||||| | |||||| | Sbjct: 663 tcaccgtcccccgctactgggcgcacaccggactctggaactggcagcggtacggcgatg 722 Query: 542 gcaaggacaacgagctaccgctggaggccgccggcgactacactcgggagtacggcgccc 601 | ||| || ||||| |||||||| || ||||||||||| || ||||||| || | Sbjct: 723 ggccggagaaggagctcgcgctggagtccaatggcgactacacgaggaagtacggggcgc 782 Query: 602 tcaacttctcggactac 618 |||||||||| |||||| Sbjct: 783 tcaacttctccgactac 799 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 972 gcagggggtgccgttcctcaccatccgctcgctctccgacctcgccgggggaggctccgc 1031 |||||||| ||||||| || |||| || |||||||||||||||||||| || |||||||| Sbjct: 1165 gcagggggcgccgttcatcgccatacggtcgctctccgacctcgccggcggcggctccgc 1224 Query: 1032 g 1032 | Sbjct: 1225 g 1225
>gb|AY108102.1| Zea mays PCO073188 mRNA sequence Length = 408 Score = 75.8 bits (38), Expect = 4e-10 Identities = 104/126 (82%) Strand = Plus / Plus Query: 117 ggcggtgacgctaatggccacggcggcggaggggtacatcactcagaagacgtgggcagc 176 ||||||| ||| ||||| |||||| ||||||| | |||| | ||||||||||| || Sbjct: 166 ggcggtggtgctcatggcaacggcgtcggagggcttcatctccaagaagacgtggagcgc 225 Query: 177 catccgccgggcgaaccgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacga 236 |||||| |||||| |||||| |||||| ||||| || || || ||||||||| ||||||| Sbjct: 226 catccggcgggcggaccgcgacgggcccttcgtggggctggtggtgcccaacgcctacga 285 Query: 237 gatggt 242 |||||| Sbjct: 286 gatggt 291 Score = 42.1 bits (21), Expect = 5.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 299 tccaagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatga 358 ||||||||||| | || ||||| ||||| || | | |||||| ||| ||||||||||||| Sbjct: 348 tccaagggcgacgattccgcttcggaactattggaagccaaaacgttgtcatggtcatga 407 Query: 359 c 359 | Sbjct: 408 c 408
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10, complete sequence Length = 138209 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 422 agggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatcggcgacg 481 ||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||| Sbjct: 112447 agggcatcgtccacttcggcatcgccggcaacgccgaccccgacctccacatcggcgacg 112388 Query: 482 tcaccatcccc 492 ||||| ||||| Sbjct: 112387 tcaccgtcccc 112377 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 972 gcagggggtgccgttcctcaccatccgctcgctctccgacctcgccgggggaggctccgc 1031 |||||||| ||||||| || |||| || |||||||||||||||||||| || |||||||| Sbjct: 111786 gcagggggcgccgttcatcgccatacggtcgctctccgacctcgccggcggcggctccgc 111727 Query: 1032 g 1032 | Sbjct: 111726 g 111726 Score = 42.1 bits (21), Expect = 5.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 574 ggcgactacactcgggagtacggcgccctcaacttctcggactac 618 ||||||||||| || ||||||| || ||||||||||| |||||| Sbjct: 112196 ggcgactacacgaggaagtacggggcgctcaacttctccgactac 112152
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 69.9 bits (35), Expect = 2e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 422 agggcatcgtccactggggcatcgctggcaacgccaacgaggacctccagatcggcgacg 481 ||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||| Sbjct: 7676052 agggcatcgtccacttcggcatcgccggcaacgccgaccccgacctccacatcggcgacg 7675993 Query: 482 tcaccatcccc 492 ||||| ||||| Sbjct: 7675992 tcaccgtcccc 7675982 Score = 65.9 bits (33), Expect = 3e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 972 gcagggggtgccgttcctcaccatccgctcgctctccgacctcgccgggggaggctccgc 1031 |||||||| ||||||| || |||| || |||||||||||||||||||| || |||||||| Sbjct: 7675391 gcagggggcgccgttcatcgccatacggtcgctctccgacctcgccggcggcggctccgc 7675332 Query: 1032 g 1032 | Sbjct: 7675331 g 7675331 Score = 42.1 bits (21), Expect = 5.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 574 ggcgactacactcgggagtacggcgccctcaacttctcggactac 618 ||||||||||| || ||||||| || ||||||||||| |||||| Sbjct: 7675801 ggcgactacacgaggaagtacggggcgctcaacttctccgactac 7675757
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 48.1 bits (24), Expect = 0.081 Identities = 27/28 (96%) Strand = Plus / Plus Query: 202 ccgttcgtcggcctcgtcgtgcccaaca 229 |||||||||||||||||||| ||||||| Sbjct: 4982931 ccgttcgtcggcctcgtcgtccccaaca 4982958
>gb|DQ226697.1| Boechera divaricarpa isolate SLW-A-C01 mRNA sequence Length = 558 Score = 46.1 bits (23), Expect = 0.32 Identities = 35/39 (89%) Strand = Plus / Plus Query: 924 cacccccgttgagatggagagcgctgccgtggccctcgt 962 |||| ||||||| ||||||||||| |||||||| ||||| Sbjct: 170 caccgccgttgaaatggagagcgccgccgtggctctcgt 208
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 462 ggacctccagatcggcgacgtc 483 |||||||||||||||||||||| Sbjct: 4445692 ggacctccagatcggcgacgtc 4445671
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 116 tggcggtgacgctaatggccacggcggcgg 145 ||||||| ||||||||||||| |||||||| Sbjct: 128654 tggcggtcacgctaatggccaaggcggcgg 128683
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1134 ggacgacggcgcggccgcggac 1155 |||||||||||||||||||||| Sbjct: 1696663 ggacgacggcgcggccgcggac 1696642
>ref|NM_001020633.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5 (ndufs5), mRNA gb|BC095614.1| Danio rerio NADH dehydrogenase (ubiquinone) Fe-S protein 5, mRNA (cDNA clone MGC:111955 IMAGE:7248997), complete cds Length = 541 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1164 tgagccagcagccacttgtcca 1185 |||||||||||||||||||||| Sbjct: 131 tgagccagcagccacttgtcca 110
>emb|CR753876.17| Zebrafish DNA sequence from clone DKEYP-116A7 in linkage group 19, complete sequence Length = 118451 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1164 tgagccagcagccacttgtcca 1185 |||||||||||||||||||||| Sbjct: 57900 tgagccagcagccacttgtcca 57921
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 116 tggcggtgacgctaatggccacggcggcgg 145 ||||||| ||||||||||||| |||||||| Sbjct: 18486224 tggcggtcacgctaatggccaaggcggcgg 18486253
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1134 ggacgacggcgcggccgcggac 1155 |||||||||||||||||||||| Sbjct: 2180378 ggacgacggcgcggccgcggac 2180357
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1134 ggacgacggcgcggccgcggac 1155 |||||||||||||||||||||| Sbjct: 3031553 ggacgacggcgcggccgcggac 3031532
>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome Length = 4008000 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 934 gagatggagagcgctgccgtggccc 958 |||||||||||||| |||||||||| Sbjct: 301792 gagatggagagcgcagccgtggccc 301816
>ref|XM_001225622.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_07967) mRNA, complete cds Length = 1821 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1053 cttcatcgacatcgccgccaagaacgccg 1081 ||||||||||||||| |||||| |||||| Sbjct: 1203 cttcatcgacatcgcggccaagtacgccg 1231
>ref|NM_119038.2| Arabidopsis thaliana unknown protein (AT4G28940) mRNA, complete cds Length = 656 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 924 cacccccgttgagatggagagcgctgccgtggc 956 |||| ||||||| ||||||||||| |||||||| Sbjct: 259 caccgccgttgaaatggagagcgccgccgtggc 291
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 774 gctggagggcatggagctgccggcg 798 ||||||||||||||| ||||||||| Sbjct: 1926832 gctggagggcatggatctgccggcg 1926808
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1001 cgctctccgacctcgccgggg 1021 ||||||||||||||||||||| Sbjct: 1023930 cgctctccgacctcgccgggg 1023950
>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence Length = 159722 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1279 tcaaatcacagttgatgagcc 1299 ||||||||||||||||||||| Sbjct: 140879 tcaaatcacagttgatgagcc 140859
>gb|BT014846.1| Arabidopsis thaliana At4g28940 gene, complete cds Length = 288 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 924 cacccccgttgagatggagagcgctgccgtggc 956 |||| ||||||| ||||||||||| |||||||| Sbjct: 66 caccgccgttgaaatggagagcgccgccgtggc 98
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 tggccacggcggcggaggggt 151 ||||||||||||||||||||| Sbjct: 27070 tggccacggcggcggaggggt 27090
>emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chromosome 1 Contains a novel gene, complete sequence Length = 203279 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 agatgctgctgagcctgttcc 415 ||||||||||||||||||||| Sbjct: 132755 agatgctgctgagcctgttcc 132735
>gb|AF328738.1|AF328738 Agelaius phoeniceus cosmid Rwcos3, partial sequence Length = 45375 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1015 gccgggggaggctccgcgctc 1035 ||||||||||||||||||||| Sbjct: 16101 gccgggggaggctccgcgctc 16121
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 924 cacccccgttgagatggagagcgctgccgtggc 956 |||| ||||||| ||||||||||| |||||||| Sbjct: 4778 caccgccgttgaaatggagagcgccgccgtggc 4810
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 924 cacccccgttgagatggagagcgctgccgtggc 956 |||| ||||||| ||||||||||| |||||||| Sbjct: 197433 caccgccgttgaaatggagagcgccgccgtggc 197465
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 42.1 bits (21), Expect = 5.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 924 cacccccgttgagatggagagcgctgccgtggc 956 |||| ||||||| ||||||||||| |||||||| Sbjct: 29809 caccgccgttgaaatggagagcgccgccgtggc 29841
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1051 accttcatcgacatcgccgcc 1071 ||||||||||||||||||||| Sbjct: 4024830 accttcatcgacatcgccgcc 4024810 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 166,325,308 Number of extensions: 8600258 Number of successful extensions: 167709 Number of sequences better than 10.0: 34 Number of HSP's gapped: 167690 Number of HSP's successfully gapped: 56 Length of query: 1318 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1295 Effective length of database: 18,503,978,556 Effective search space: 23962652230020 Effective search space used: 23962652230020 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
