ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf116g11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001066110.1| Oryza sativa (japonica cultivar-group) Os07g0459400 (Os07g0459400) mRNA, complete cds Length = 2078 Score = 1063 bits (536), Expect = 0.0 Identities = 1016/1176 (86%) Strand = Plus / Plus Query: 684 ggcggtagctggaagaaggtgctcaggttcctgcagtcagtggagcaatccttcgacacc 743 ||||| |||||||||||||||||||||||||||||||| || ||||| |||| || |||| Sbjct: 548 ggcggcagctggaagaaggtgctcaggttcctgcagtccgtcgagcagtcctccggcacc 607 Query: 744 gtacatacctcgtccggcaacatgcaagtagcaacagggagatatcacacgctcttagtc 803 || || ||||| |||||||||||||||||||| ||||| ||||||||||| || || ||| Sbjct: 608 gtccacacctcctccggcaacatgcaagtagcgacaggaagatatcacacacttttggtc 667 Query: 804 catgactcttcggtctattcttgtgggtccagcttgtgcggtgtgctaggacatggtcct 863 ||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| || Sbjct: 668 catgactcttctgtctattcttgtggatccagtttgtgtggggtgctaggtcatggccca 727 Query: 864 gatactacacagtgtgtggcattcagtcgggtttccttcccatcgcttgctcgtgttgtt 923 ||||| || ||||||| ||||||||| ||||| |||||||||| ||| |||||||||| Sbjct: 728 gatacaacccagtgtgcggcattcagcagggttcccttcccatcactttctcgtgttgtc 787 Query: 924 aatatatctgcctttcacaatcatgcagctttcgttacagagtctggggaggtgttcacc 983 || || ||||||| |||||| ||||||||||| || ||||||| |||||||| ||||| Sbjct: 788 aacatctctgcctctcacaaccatgcagcttttgtcacagagttaggggaggtcttcact 847 Query: 984 tgtggagataattcatcagcttgctgcggtcatggtgatgtggggcgaactatatttcgg 1043 |||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct: 848 tgtggagataattcatcattatgctgtggtcacggtgaggtggggcgaactatatttcga 907 Query: 1044 ccaacccaaatactagcccttgaaggaatttcctgcaagcaggtcgctactggtctaagt 1103 |||||| ||||| ||||| |||||||||| ||||| ||||| || |||||| ||||| Sbjct: 908 ccaaccgaaataaaggccctaaaaggaatttcttgcaaacaggttgccactggtttaagt 967 Query: 1104 ttcacggtgatacttacaaggaatgggctagtgtatacatgtggaagtaacacacatggc 1163 || || || || ||||||| | |||||| ||| ||||||||||||||||||||||||||| Sbjct: 968 tttactgtcattcttacaacggatgggcaagtatatacatgtggaagtaacacacatggc 1027 Query: 1164 cagcttggtcatggtgacactatagacagggctgctccaaagattgttgaattattcaaa 1223 |||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| || Sbjct: 1028 cagcttggtcatggtgacacaatagacagggctactccaaagatcgttgaattatttgaa 1087 Query: 1224 ggtctcagtccagtggtgcaggttgcagctggtgcaagctatacatttgctgtgactgat 1283 || || ||| || ||||||||||| |||||||| ||||||||||||||||| || ||| Sbjct: 1088 ggccttgctccggtagtgcaggttgctgctggtgccagctatacatttgctgtaacggat 1147 Query: 1284 gatgggacagtttattcttttgggtcttgtactaacttctgtcttggacatggggatcag 1343 ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 1148 gatggaacagtttattcctttggctcttgtaccaacttctgccttggacatggagatcag 1207 Query: 1344 cacaatgaacttcttccacgtgcaatccaatcatttaagaggaggaacattcttgttgtc 1403 || ||||||||| ||||||||||||||| ||||| ||||||||||| |||| ||| || Sbjct: 1208 catgatgaacttcgtccacgtgcaatccagtcattcaagaggaggaatattcatgtggtt 1267 Query: 1404 cgtgtatccgctggagatgagcatgctgtagctcttgatgcgttgggatatgtctataca 1463 || || || ||||| |||||||||||||||||||||||||| |||| ||||| |||||| Sbjct: 1268 cgcgtgtctgctggtgatgagcatgctgtagctcttgatgcactgggttatgtttataca 1327 Query: 1464 tggggtagaggctactgtggagcattaggtcacggtgatgaaaatgataaaactagccca 1523 ||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 1328 tggggcagaggttactgtggagcattaggccatggtgatgagaatgacaaaactagccca 1387 Query: 1524 gaattgattgtcggcctgaagggtcaagttgctgtacaggtatgcgcaagaaagagaaag 1583 |||||||| | | ||||| ||||||||||||| ||||| || ||||| || |||||| Sbjct: 1388 gaattgatcagcagtttgaagagtcaagttgctgtgcaggtctgtgcaaggaaaagaaag 1447 Query: 1584 acctttgttctcactgatgaaggctcagttgttgcatttggatggatgggctttgggagt 1643 || |||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct: 1448 acatttgttcttactgatgagggctcagtttttgcattcggatggatgggctttgggagt 1507 Query: 1644 ttagggtttcctgaccgtggatcatcggacaaagtgatgcagcctcgtgttctcgacagc 1703 ||||||||||||||||| |||||||| |||||||| ||| |||||| || ||||| || Sbjct: 1508 ttagggtttcctgaccgaggatcatccgacaaagtaatgaggcctcgagtcctcgatagt 1567 Query: 1704 ctatgtggtcactatgtctctcaaataagcactggactataccacactgttgcagtgaca 1763 || ||| ||||||||| || ||||| |||||||| || ||||||||||||||||||||| Sbjct: 1568 ctgcgtgatcactatgtttcacaaattagcactggcctgtaccacactgttgcagtgaca 1627 Query: 1764 agtaaaggtatcgtgtttggttttggagacaatgagcgggcacaacttgggcaggaattc 1823 | | ||| || || ||||| ||||| ||||| ||||| ||||||||||||||||| | | Sbjct: 1628 aacagaggcattgtatttgggtttggggacaacgagcgcgcacaacttgggcaggagtac 1687 Query: 1824 attcgtgggtgtttgaaacctacagagataatgttc 1859 ||||||||||| || ||||||||||| ||||||||| Sbjct: 1688 attcgtgggtgcttaaaacctacagaaataatgttc 1723 Score = 135 bits (68), Expect = 8e-28 Identities = 131/152 (86%) Strand = Plus / Plus Query: 459 ggggagaagtcgcctcgcgctttctcgatggaagagttaccaggccacctcatcggggag 518 ||||||||| |||| || |||||||||||||| ||| | || |||||||||||||||||| Sbjct: 323 ggggagaaggcgccgcgggctttctcgatggaggagctccccggccacctcatcggggag 382 Query: 519 gtactgagctccggcaggctcgccgctggtgacctcgccaggcttgaggctacctgccgc 578 || |||| ||||||| | |||||||| || |||||||| |||| ||||| || |||||| Sbjct: 383 gtcctgacctccggccgcctcgccgccggggacctcgcgcggctcgaggccacgtgccgc 442 Query: 579 gcgctccgccctctcgctgagcaagccgcctc 610 ||||||||||| ||||| ||||| |||||||| Sbjct: 443 gcgctccgcccgctcgccgagcacgccgcctc 474
>dbj|AK101767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064G16, full insert sequence Length = 2079 Score = 1063 bits (536), Expect = 0.0 Identities = 1016/1176 (86%) Strand = Plus / Plus Query: 684 ggcggtagctggaagaaggtgctcaggttcctgcagtcagtggagcaatccttcgacacc 743 ||||| |||||||||||||||||||||||||||||||| || ||||| |||| || |||| Sbjct: 549 ggcggcagctggaagaaggtgctcaggttcctgcagtccgtcgagcagtcctccggcacc 608 Query: 744 gtacatacctcgtccggcaacatgcaagtagcaacagggagatatcacacgctcttagtc 803 || || ||||| |||||||||||||||||||| ||||| ||||||||||| || || ||| Sbjct: 609 gtccacacctcctccggcaacatgcaagtagcgacaggaagatatcacacacttttggtc 668 Query: 804 catgactcttcggtctattcttgtgggtccagcttgtgcggtgtgctaggacatggtcct 863 ||||||||||| |||||||||||||| ||||| ||||| || |||||||| ||||| || Sbjct: 669 catgactcttctgtctattcttgtggatccagtttgtgtggggtgctaggtcatggccca 728 Query: 864 gatactacacagtgtgtggcattcagtcgggtttccttcccatcgcttgctcgtgttgtt 923 ||||| || ||||||| ||||||||| ||||| |||||||||| ||| |||||||||| Sbjct: 729 gatacaacccagtgtgcggcattcagcagggttcccttcccatcactttctcgtgttgtc 788 Query: 924 aatatatctgcctttcacaatcatgcagctttcgttacagagtctggggaggtgttcacc 983 || || ||||||| |||||| ||||||||||| || ||||||| |||||||| ||||| Sbjct: 789 aacatctctgcctctcacaaccatgcagcttttgtcacagagttaggggaggtcttcact 848 Query: 984 tgtggagataattcatcagcttgctgcggtcatggtgatgtggggcgaactatatttcgg 1043 |||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| Sbjct: 849 tgtggagataattcatcattatgctgtggtcacggtgaggtggggcgaactatatttcga 908 Query: 1044 ccaacccaaatactagcccttgaaggaatttcctgcaagcaggtcgctactggtctaagt 1103 |||||| ||||| ||||| |||||||||| ||||| ||||| || |||||| ||||| Sbjct: 909 ccaaccgaaataaaggccctaaaaggaatttcttgcaaacaggttgccactggtttaagt 968 Query: 1104 ttcacggtgatacttacaaggaatgggctagtgtatacatgtggaagtaacacacatggc 1163 || || || || ||||||| | |||||| ||| ||||||||||||||||||||||||||| Sbjct: 969 tttactgtcattcttacaacggatgggcaagtatatacatgtggaagtaacacacatggc 1028 Query: 1164 cagcttggtcatggtgacactatagacagggctgctccaaagattgttgaattattcaaa 1223 |||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| || Sbjct: 1029 cagcttggtcatggtgacacaatagacagggctactccaaagatcgttgaattatttgaa 1088 Query: 1224 ggtctcagtccagtggtgcaggttgcagctggtgcaagctatacatttgctgtgactgat 1283 || || ||| || ||||||||||| |||||||| ||||||||||||||||| || ||| Sbjct: 1089 ggccttgctccggtagtgcaggttgctgctggtgccagctatacatttgctgtaacggat 1148 Query: 1284 gatgggacagtttattcttttgggtcttgtactaacttctgtcttggacatggggatcag 1343 ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 1149 gatggaacagtttattcctttggctcttgtaccaacttctgccttggacatggagatcag 1208 Query: 1344 cacaatgaacttcttccacgtgcaatccaatcatttaagaggaggaacattcttgttgtc 1403 || ||||||||| ||||||||||||||| ||||| ||||||||||| |||| ||| || Sbjct: 1209 catgatgaacttcgtccacgtgcaatccagtcattcaagaggaggaatattcatgtggtt 1268 Query: 1404 cgtgtatccgctggagatgagcatgctgtagctcttgatgcgttgggatatgtctataca 1463 || || || ||||| |||||||||||||||||||||||||| |||| ||||| |||||| Sbjct: 1269 cgcgtgtctgctggtgatgagcatgctgtagctcttgatgcactgggttatgtttataca 1328 Query: 1464 tggggtagaggctactgtggagcattaggtcacggtgatgaaaatgataaaactagccca 1523 ||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||||||||| Sbjct: 1329 tggggcagaggttactgtggagcattaggccatggtgatgagaatgacaaaactagccca 1388 Query: 1524 gaattgattgtcggcctgaagggtcaagttgctgtacaggtatgcgcaagaaagagaaag 1583 |||||||| | | ||||| ||||||||||||| ||||| || ||||| || |||||| Sbjct: 1389 gaattgatcagcagtttgaagagtcaagttgctgtgcaggtctgtgcaaggaaaagaaag 1448 Query: 1584 acctttgttctcactgatgaaggctcagttgttgcatttggatggatgggctttgggagt 1643 || |||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||| Sbjct: 1449 acatttgttcttactgatgagggctcagtttttgcattcggatggatgggctttgggagt 1508 Query: 1644 ttagggtttcctgaccgtggatcatcggacaaagtgatgcagcctcgtgttctcgacagc 1703 ||||||||||||||||| |||||||| |||||||| ||| |||||| || ||||| || Sbjct: 1509 ttagggtttcctgaccgaggatcatccgacaaagtaatgaggcctcgagtcctcgatagt 1568 Query: 1704 ctatgtggtcactatgtctctcaaataagcactggactataccacactgttgcagtgaca 1763 || ||| ||||||||| || ||||| |||||||| || ||||||||||||||||||||| Sbjct: 1569 ctgcgtgatcactatgtttcacaaattagcactggcctgtaccacactgttgcagtgaca 1628 Query: 1764 agtaaaggtatcgtgtttggttttggagacaatgagcgggcacaacttgggcaggaattc 1823 | | ||| || || ||||| ||||| ||||| ||||| ||||||||||||||||| | | Sbjct: 1629 aacagaggcattgtatttgggtttggggacaacgagcgcgcacaacttgggcaggagtac 1688 Query: 1824 attcgtgggtgtttgaaacctacagagataatgttc 1859 ||||||||||| || ||||||||||| ||||||||| Sbjct: 1689 attcgtgggtgcttaaaacctacagaaataatgttc 1724 Score = 135 bits (68), Expect = 8e-28 Identities = 131/152 (86%) Strand = Plus / Plus Query: 459 ggggagaagtcgcctcgcgctttctcgatggaagagttaccaggccacctcatcggggag 518 ||||||||| |||| || |||||||||||||| ||| | || |||||||||||||||||| Sbjct: 324 ggggagaaggcgccgcgggctttctcgatggaggagctccccggccacctcatcggggag 383 Query: 519 gtactgagctccggcaggctcgccgctggtgacctcgccaggcttgaggctacctgccgc 578 || |||| ||||||| | |||||||| || |||||||| |||| ||||| || |||||| Sbjct: 384 gtcctgacctccggccgcctcgccgccggggacctcgcgcggctcgaggccacgtgccgc 443 Query: 579 gcgctccgccctctcgctgagcaagccgcctc 610 ||||||||||| ||||| ||||| |||||||| Sbjct: 444 gcgctccgcccgctcgccgagcacgccgcctc 475
>gb|AY110537.1| Zea mays CL7395_1 mRNA sequence Length = 1065 Score = 609 bits (307), Expect = e-170 Identities = 674/795 (84%), Gaps = 1/795 (0%) Strand = Plus / Minus Query: 1066 aaggaatttcctgcaagcaggtcgctactggtctaagtttcacggtgatacttacaagga 1125 |||| ||| ||||||||||||| ||||||||||||||||| || ||||| ||||||||| Sbjct: 1049 aagggattccctgcaagcaggttgctactggtctaagttttactgtgattcttacaaggg 990 Query: 1126 atgggctagtgtatacatgtggaagtaacacacatggccagcttggtcatggtgacacta 1185 |||| | ||| ||||| |||||||| || ||||||||||| |||||||| |||||||| | Sbjct: 989 atggacaagtatatacttgtggaagcaatacacatggccaacttggtcacggtgacacca 930 Query: 1186 tagacagggctgctccaaagattgttgaattattcaaaggtctcagtccagtggtgcagg 1245 |||||||||| |||||||| || | ||||| || |||| | || || ||||||||| Sbjct: 929 tagacagggccactccaaagcttatagaattgtttgaaggccccactcaggtggtgcaga 870 Query: 1246 ttgcagctggtgcaagctatacatttgctgtgactgatgatgggacagtttattcttttg 1305 ||||||| || |||||||| || |||||||| || ||||||||||| ||| |||| |||| Sbjct: 869 ttgcagccggcgcaagctacacttttgctgtaacagatgatgggactgttcattcgtttg 810 Query: 1306 ggtcttgtactaacttctgtcttggacatggggatcagcacaatgaacttcttccacgtg 1365 ||||||| ||||| ||||| |||||||||||||||||||| | ||||||||||| |||| Sbjct: 809 ggtcttgcactaatttctgccttggacatggggatcagcatgacgaacttcttcctcgtg 750 Query: 1366 caatccaatcatttaagaggaggaacattcttgttgtccgtgtatccgctggagatgagc 1425 |||||||||||||||||||||||||||||| ||| |||||||| || ||||||||||||| Sbjct: 749 caatccaatcatttaagaggaggaacattcatgtagtccgtgtttctgctggagatgagc 690 Query: 1426 atgctgtagctcttgatgcgttgggatatgtctatacatggggtagaggctactgtggag 1485 ||||||| ||||||||||| | ||| | || ||||| ||||| ||||| |||||||||| Sbjct: 689 atgctgtggctcttgatgcactaggacacgtttatacttggggcagaggatactgtggag 630 Query: 1486 cattaggtcacggtgatgaaaatgataaaactag-cccagaattgattgtcggcctgaag 1544 | |||||||| |||||||| || ||||||||||| | |||||||||| | | || ||||| Sbjct: 629 ccttaggtcatggtgatgagaacgataaaactagacacagaattgatcggcagcttgaag 570 Query: 1545 ggtcaagttgctgtacaggtatgcgcaagaaagagaaagacctttgttctcactgatgaa 1604 || ||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct: 569 ggccaagttgctgtgcaggtatgtgcaaggaagaggaagacgtttgtcctcacggacgag 510 Query: 1605 ggctcagttgttgcatttggatggatgggctttgggagtttagggtttcctgaccgtgga 1664 |||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 509 ggctcagtcgttgcatttggttggatgggcttcgggagcttaggatttcccgaccgagga 450 Query: 1665 tcatcggacaaagtgatgcagcctcgtgttctcgacagcctatgtggtcactatgtctct 1724 | || |||||||| ||| ||| || || || || ||||| | |||||| ||||| Sbjct: 449 ccgtcagacaaagtaatgaggccccgcgtccttgagagcctgcaggatcactacgtctca 390 Query: 1725 caaataagcactggactataccacactgttgcagtgacaagtaaaggtatcgtgtttggt 1784 ||||||||||| ||||| |||||||||||||||||||||||||| || || ||||| || Sbjct: 389 caaataagcacgggactgtaccacactgttgcagtgacaagtaagggcattgtgttcggg 330 Query: 1785 tttggagacaatgagcgggcacaacttgggcaggaattcattcgtgggtgtttgaaacct 1844 ||||| ||||||||| | || |||||||||||||| | |||||||||||| || |||||| Sbjct: 329 tttggggacaatgagagagcccaacttgggcaggagtacattcgtgggtgcttaaaacct 270 Query: 1845 acagagataatgttc 1859 || |||||||||||| Sbjct: 269 actgagataatgttc 255
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 363 bits (183), Expect = 2e-96 Identities = 318/363 (87%) Strand = Plus / Plus Query: 1082 gcaggtcgctactggtctaagtttcacggtgatacttacaaggaatgggctagtgtatac 1141 |||||| || |||||| ||||||| || || || ||||||| | |||||| ||| ||||| Sbjct: 15978303 gcaggttgccactggtttaagttttactgtcattcttacaacggatgggcaagtatatac 15978362 Query: 1142 atgtggaagtaacacacatggccagcttggtcatggtgacactatagacagggctgctcc 1201 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 15978363 atgtggaagtaacacacatggccagcttggtcatggtgacacaatagacagggctactcc 15978422 Query: 1202 aaagattgttgaattattcaaaggtctcagtccagtggtgcaggttgcagctggtgcaag 1261 |||||| ||||||||||| |||| || ||| || ||||||||||| |||||||| || Sbjct: 15978423 aaagatcgttgaattatttgaaggccttgctccggtagtgcaggttgctgctggtgccag 15978482 Query: 1262 ctatacatttgctgtgactgatgatgggacagtttattcttttgggtcttgtactaactt 1321 ||||||||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct: 15978483 ctatacatttgctgtaacggatgatggaacagtttattcctttggctcttgtaccaactt 15978542 Query: 1322 ctgtcttggacatggggatcagcacaatgaacttcttccacgtgcaatccaatcatttaa 1381 ||| ||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| || Sbjct: 15978543 ctgccttggacatggagatcagcatgatgaacttcgtccacgtgcaatccagtcattcaa 15978602 Query: 1382 gaggaggaacattcttgttgtccgtgtatccgctggagatgagcatgctgtagctcttga 1441 ||||||||| |||| ||| || || || || ||||| ||||||||||||||||||||||| Sbjct: 15978603 gaggaggaatattcatgtggttcgcgtgtctgctggtgatgagcatgctgtagctcttga 15978662 Query: 1442 tgc 1444 ||| Sbjct: 15978663 tgc 15978665 Score = 272 bits (137), Expect = 5e-69 Identities = 260/301 (86%) Strand = Plus / Plus Query: 1559 acaggtatgcgcaagaaagagaaagacctttgttctcactgatgaaggctcagttgttgc 1618 |||||| || ||||| || |||||||| |||||||| |||||||| ||||||||| |||| Sbjct: 15979152 acaggtctgtgcaaggaaaagaaagacatttgttcttactgatgagggctcagtttttgc 15979211 Query: 1619 atttggatggatgggctttgggagtttagggtttcctgaccgtggatcatcggacaaagt 1678 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 15979212 attcggatggatgggctttgggagtttagggtttcctgaccgaggatcatccgacaaagt 15979271 Query: 1679 gatgcagcctcgtgttctcgacagcctatgtggtcactatgtctctcaaataagcactgg 1738 ||| |||||| || ||||| || || ||| ||||||||| || ||||| |||||||| Sbjct: 15979272 aatgaggcctcgagtcctcgatagtctgcgtgatcactatgtttcacaaattagcactgg 15979331 Query: 1739 actataccacactgttgcagtgacaagtaaaggtatcgtgtttggttttggagacaatga 1798 || |||||||||||||||||||||| | ||| || || ||||| ||||| ||||| || Sbjct: 15979332 cctgtaccacactgttgcagtgacaaacagaggcattgtatttgggtttggggacaacga 15979391 Query: 1799 gcgggcacaacttgggcaggaattcattcgtgggtgtttgaaacctacagagataatgtt 1858 ||| ||||||||||||||||| | |||||||||||| || ||||||||||| |||||||| Sbjct: 15979392 gcgcgcacaacttgggcaggagtacattcgtgggtgcttaaaacctacagaaataatgtt 15979451 Query: 1859 c 1859 | Sbjct: 15979452 c 15979452 Score = 182 bits (92), Expect = 4e-42 Identities = 182/212 (85%) Strand = Plus / Plus Query: 765 atgcaagtagcaacagggagatatcacacgctcttagtccatgactcttcggtctattct 824 ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||||||||| Sbjct: 15977575 atgcaagtagcgacaggaagatatcacacacttttggtccatgactcttctgtctattct 15977634 Query: 825 tgtgggtccagcttgtgcggtgtgctaggacatggtcctgatactacacagtgtgtggca 884 ||||| ||||| ||||| || |||||||| ||||| || ||||| || ||||||| |||| Sbjct: 15977635 tgtggatccagtttgtgtggggtgctaggtcatggcccagatacaacccagtgtgcggca 15977694 Query: 885 ttcagtcgggtttccttcccatcgcttgctcgtgttgttaatatatctgcctttcacaat 944 ||||| ||||| |||||||||| ||| |||||||||| || || ||||||| |||||| Sbjct: 15977695 ttcagcagggttcccttcccatcactttctcgtgttgtcaacatctctgcctctcacaac 15977754 Query: 945 catgcagctttcgttacagagtctggggaggt 976 ||||||||||| || ||||||| |||||||| Sbjct: 15977755 catgcagcttttgtcacagagttaggggaggt 15977786 Score = 135 bits (68), Expect = 8e-28 Identities = 131/152 (86%) Strand = Plus / Plus Query: 459 ggggagaagtcgcctcgcgctttctcgatggaagagttaccaggccacctcatcggggag 518 ||||||||| |||| || |||||||||||||| ||| | || |||||||||||||||||| Sbjct: 15976340 ggggagaaggcgccgcgggctttctcgatggaggagctccccggccacctcatcggggag 15976399 Query: 519 gtactgagctccggcaggctcgccgctggtgacctcgccaggcttgaggctacctgccgc 578 || |||| ||||||| | |||||||| || |||||||| |||| ||||| || |||||| Sbjct: 15976400 gtcctgacctccggccgcctcgccgccggggacctcgcgcggctcgaggccacgtgccgc 15976459 Query: 579 gcgctccgccctctcgctgagcaagccgcctc 610 ||||||||||| ||||| ||||| |||||||| Sbjct: 15976460 gcgctccgcccgctcgccgagcacgccgcctc 15976491 Score = 101 bits (51), Expect = 1e-17 Identities = 93/107 (86%) Strand = Plus / Plus Query: 1458 tatacatggggtagaggctactgtggagcattaggtcacggtgatgaaaatgataaaact 1517 ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 15978766 tatacatggggcagaggttactgtggagcattaggccatggtgatgagaatgacaaaact 15978825 Query: 1518 agcccagaattgattgtcggcctgaagggtcaagttgctgtacaggt 1564 |||||||||||||| | | ||||| ||||||||||||| ||||| Sbjct: 15978826 agcccagaattgatcagcagtttgaagagtcaagttgctgtgcaggt 15978872 Score = 93.7 bits (47), Expect = 3e-15 Identities = 98/115 (85%) Strand = Plus / Plus Query: 973 aggtgttcacctgtggagataattcatcagcttgctgcggtcatggtgatgtggggcgaa 1032 |||| ||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 15977867 aggtcttcacttgtggagataattcatcattatgctgtggtcacggtgaggtggggcgaa 15977926 Query: 1033 ctatatttcggccaacccaaatactagcccttgaaggaatttcctgcaagcaggt 1087 |||||||||| |||||| ||||| ||||| |||||||||| ||||| ||||| Sbjct: 15977927 ctatatttcgaccaaccgaaataaaggccctaaaaggaatttcttgcaaacaggt 15977981 Score = 89.7 bits (45), Expect = 4e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 684 ggcggtagctggaagaaggtgctcaggttcctgcagtcagtggagcaatccttcgacacc 743 ||||| |||||||||||||||||||||||||||||||| || ||||| |||| || |||| Sbjct: 15976565 ggcggcagctggaagaaggtgctcaggttcctgcagtccgtcgagcagtcctccggcacc 15976624 Query: 744 gtacatacctcgtccggcaac 764 || || ||||| ||||||||| Sbjct: 15976625 gtccacacctcctccggcaac 15976645
>dbj|AP005642.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040K22 Length = 155832 Score = 363 bits (183), Expect = 2e-96 Identities = 318/363 (87%) Strand = Plus / Plus Query: 1082 gcaggtcgctactggtctaagtttcacggtgatacttacaaggaatgggctagtgtatac 1141 |||||| || |||||| ||||||| || || || ||||||| | |||||| ||| ||||| Sbjct: 59705 gcaggttgccactggtttaagttttactgtcattcttacaacggatgggcaagtatatac 59764 Query: 1142 atgtggaagtaacacacatggccagcttggtcatggtgacactatagacagggctgctcc 1201 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct: 59765 atgtggaagtaacacacatggccagcttggtcatggtgacacaatagacagggctactcc 59824 Query: 1202 aaagattgttgaattattcaaaggtctcagtccagtggtgcaggttgcagctggtgcaag 1261 |||||| ||||||||||| |||| || ||| || ||||||||||| |||||||| || Sbjct: 59825 aaagatcgttgaattatttgaaggccttgctccggtagtgcaggttgctgctggtgccag 59884 Query: 1262 ctatacatttgctgtgactgatgatgggacagtttattcttttgggtcttgtactaactt 1321 ||||||||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct: 59885 ctatacatttgctgtaacggatgatggaacagtttattcctttggctcttgtaccaactt 59944 Query: 1322 ctgtcttggacatggggatcagcacaatgaacttcttccacgtgcaatccaatcatttaa 1381 ||| ||||||||||| |||||||| ||||||||| ||||||||||||||| ||||| || Sbjct: 59945 ctgccttggacatggagatcagcatgatgaacttcgtccacgtgcaatccagtcattcaa 60004 Query: 1382 gaggaggaacattcttgttgtccgtgtatccgctggagatgagcatgctgtagctcttga 1441 ||||||||| |||| ||| || || || || ||||| ||||||||||||||||||||||| Sbjct: 60005 gaggaggaatattcatgtggttcgcgtgtctgctggtgatgagcatgctgtagctcttga 60064 Query: 1442 tgc 1444 ||| Sbjct: 60065 tgc 60067 Score = 272 bits (137), Expect = 5e-69 Identities = 260/301 (86%) Strand = Plus / Plus Query: 1559 acaggtatgcgcaagaaagagaaagacctttgttctcactgatgaaggctcagttgttgc 1618 |||||| || ||||| || |||||||| |||||||| |||||||| ||||||||| |||| Sbjct: 60554 acaggtctgtgcaaggaaaagaaagacatttgttcttactgatgagggctcagtttttgc 60613 Query: 1619 atttggatggatgggctttgggagtttagggtttcctgaccgtggatcatcggacaaagt 1678 ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 60614 attcggatggatgggctttgggagtttagggtttcctgaccgaggatcatccgacaaagt 60673 Query: 1679 gatgcagcctcgtgttctcgacagcctatgtggtcactatgtctctcaaataagcactgg 1738 ||| |||||| || ||||| || || ||| ||||||||| || ||||| |||||||| Sbjct: 60674 aatgaggcctcgagtcctcgatagtctgcgtgatcactatgtttcacaaattagcactgg 60733 Query: 1739 actataccacactgttgcagtgacaagtaaaggtatcgtgtttggttttggagacaatga 1798 || |||||||||||||||||||||| | ||| || || ||||| ||||| ||||| || Sbjct: 60734 cctgtaccacactgttgcagtgacaaacagaggcattgtatttgggtttggggacaacga 60793 Query: 1799 gcgggcacaacttgggcaggaattcattcgtgggtgtttgaaacctacagagataatgtt 1858 ||| ||||||||||||||||| | |||||||||||| || ||||||||||| |||||||| Sbjct: 60794 gcgcgcacaacttgggcaggagtacattcgtgggtgcttaaaacctacagaaataatgtt 60853 Query: 1859 c 1859 | Sbjct: 60854 c 60854 Score = 182 bits (92), Expect = 4e-42 Identities = 182/212 (85%) Strand = Plus / Plus Query: 765 atgcaagtagcaacagggagatatcacacgctcttagtccatgactcttcggtctattct 824 ||||||||||| ||||| ||||||||||| || || |||||||||||||| ||||||||| Sbjct: 58977 atgcaagtagcgacaggaagatatcacacacttttggtccatgactcttctgtctattct 59036 Query: 825 tgtgggtccagcttgtgcggtgtgctaggacatggtcctgatactacacagtgtgtggca 884 ||||| ||||| ||||| || |||||||| ||||| || ||||| || ||||||| |||| Sbjct: 59037 tgtggatccagtttgtgtggggtgctaggtcatggcccagatacaacccagtgtgcggca 59096 Query: 885 ttcagtcgggtttccttcccatcgcttgctcgtgttgttaatatatctgcctttcacaat 944 ||||| ||||| |||||||||| ||| |||||||||| || || ||||||| |||||| Sbjct: 59097 ttcagcagggttcccttcccatcactttctcgtgttgtcaacatctctgcctctcacaac 59156 Query: 945 catgcagctttcgttacagagtctggggaggt 976 ||||||||||| || ||||||| |||||||| Sbjct: 59157 catgcagcttttgtcacagagttaggggaggt 59188 Score = 135 bits (68), Expect = 8e-28 Identities = 131/152 (86%) Strand = Plus / Plus Query: 459 ggggagaagtcgcctcgcgctttctcgatggaagagttaccaggccacctcatcggggag 518 ||||||||| |||| || |||||||||||||| ||| | || |||||||||||||||||| Sbjct: 57742 ggggagaaggcgccgcgggctttctcgatggaggagctccccggccacctcatcggggag 57801 Query: 519 gtactgagctccggcaggctcgccgctggtgacctcgccaggcttgaggctacctgccgc 578 || |||| ||||||| | |||||||| || |||||||| |||| ||||| || |||||| Sbjct: 57802 gtcctgacctccggccgcctcgccgccggggacctcgcgcggctcgaggccacgtgccgc 57861 Query: 579 gcgctccgccctctcgctgagcaagccgcctc 610 ||||||||||| ||||| ||||| |||||||| Sbjct: 57862 gcgctccgcccgctcgccgagcacgccgcctc 57893 Score = 101 bits (51), Expect = 1e-17 Identities = 93/107 (86%) Strand = Plus / Plus Query: 1458 tatacatggggtagaggctactgtggagcattaggtcacggtgatgaaaatgataaaact 1517 ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 60168 tatacatggggcagaggttactgtggagcattaggccatggtgatgagaatgacaaaact 60227 Query: 1518 agcccagaattgattgtcggcctgaagggtcaagttgctgtacaggt 1564 |||||||||||||| | | ||||| ||||||||||||| ||||| Sbjct: 60228 agcccagaattgatcagcagtttgaagagtcaagttgctgtgcaggt 60274 Score = 93.7 bits (47), Expect = 3e-15 Identities = 98/115 (85%) Strand = Plus / Plus Query: 973 aggtgttcacctgtggagataattcatcagcttgctgcggtcatggtgatgtggggcgaa 1032 |||| ||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct: 59269 aggtcttcacttgtggagataattcatcattatgctgtggtcacggtgaggtggggcgaa 59328 Query: 1033 ctatatttcggccaacccaaatactagcccttgaaggaatttcctgcaagcaggt 1087 |||||||||| |||||| ||||| ||||| |||||||||| ||||| ||||| Sbjct: 59329 ctatatttcgaccaaccgaaataaaggccctaaaaggaatttcttgcaaacaggt 59383 Score = 89.7 bits (45), Expect = 4e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 684 ggcggtagctggaagaaggtgctcaggttcctgcagtcagtggagcaatccttcgacacc 743 ||||| |||||||||||||||||||||||||||||||| || ||||| |||| || |||| Sbjct: 57967 ggcggcagctggaagaaggtgctcaggttcctgcagtccgtcgagcagtcctccggcacc 58026 Query: 744 gtacatacctcgtccggcaac 764 || || ||||| ||||||||| Sbjct: 58027 gtccacacctcctccggcaac 58047
>gb|AY107951.1| Zea mays PCO086957 mRNA sequence Length = 673 Score = 264 bits (133), Expect = 1e-66 Identities = 329/392 (83%), Gaps = 3/392 (0%) Strand = Plus / Plus Query: 1509 gataaaactagcccagaattgattgtcggcctgaagggtcaagttgctgtacaggtatgc 1568 ||||||||||||||||||||||| | | || ||||||| ||||||||||| |||||||| Sbjct: 12 gataaaactagcccagaattgatcggcagcttgaagggccaagttgctgtgcaggtatgt 71 Query: 1569 gcaagaaagagaaagacctttgttctcactgatgaaggctcagttgttgcatttggatgg 1628 ||||| ||||| ||||| ||||| ||||| || || |||||||||||||| ||||||||| Sbjct: 72 gcaaggaagaggaagacgtttgtcctcacggacgagggctcagttgttgcgtttggatgg 131 Query: 1629 atgggctttgggagtttagggtttcctgaccgtggatcatcggacaaagtgatgcagcct 1688 ||||| ||||||||| ||||||||| |||||| ||| |||| |||||||| ||| ||| Sbjct: 132 atgggttttgggagtctagggtttcttgaccgaggaacatcagacaaagtaatgaggccc 191 Query: 1689 cgtgttctcgacagcctatgtggtcactatgtctctcaaataagcactggactataccac 1748 || ||||| || ||||| | |||||| ||||| ||||||||||| ||||| || ||| Sbjct: 192 cgcgttcttgagagcctgcaggatcactacgtctcccaaataagcaccggactgtatcac 251 Query: 1749 actgttgcagtgacaagtaaaggtatcgtgtttggttttggagacaatgagcgggcacaa 1808 ||||| |||||||||| ||| || || || || || || || ||||| ||||| |||||| Sbjct: 252 actgtcgcagtgacaaataagggcattgtattcgggttcggggacaacgagcgagcacaa 311 Query: 1809 cttgggcaggaattcattcgtgggtgtttgaaacctacagagataatgttcgacaaaagt 1868 ||||||||||| | |||||||||||| || |||||||| |||||||||||| |||||| Sbjct: 312 cttgggcaggagtacattcgtgggtgcttaaaacctaccgagataatgttc--caaaag- 368 Query: 1869 agtattgaagatatagccattgcagcgcctag 1900 ||||| ||||| ||| | ||||| |||||||| Sbjct: 369 agtatcgaagacataccaattgcggcgcctag 400
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 75.8 bits (38), Expect = 6e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 660 cgcggggagctcctcgcaagatgtggcggtagctggaagaaggtgctcaggttcctgcag 719 |||||||||||||| | || || |||| |||||||||||||||||||||||||||||| Sbjct: 18616744 cgcggggagctcctggagaggtgcagcggcagctggaagaaggtgctcaggttcctgcag 18616685 Query: 720 tcagtggagcaatccttcgacaccgtacatacctcgtccggc 761 || || ||||| || | || ||| || |||||||| |||||| Sbjct: 18616684 tccgtcgagcagtcgtccggcactgtccatacctcctccggc 18616643 Score = 71.9 bits (36), Expect = 9e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 483 tcgatggaagagttaccaggccacctcatcggggaggtactgagctccggcaggctcgcc 542 |||||||| ||| |||| ||||||| ||||||||||| |||| ||||||| | |||||| Sbjct: 18616926 tcgatggaggagctacccagccaccttatcggggaggtcctgacctccggccgcctcgcc 18616867 Query: 543 gctggtgacctcgccaggcttgaggctacctgccgcgcgctccgccctctcgctgagcaa 602 || || ||||||| ||||||||||| || || | || |||| |||| ||||| ||||| Sbjct: 18616866 gccgggaacctcgcgaggcttgaggccacatgtctcgtgctctgcccgctcgccgagcac 18616807 Query: 603 gccg 606 |||| Sbjct: 18616806 gccg 18616803 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ggaatctgttggatctgattt 259 ||||||||||||||||||||| Sbjct: 31129521 ggaatctgttggatctgattt 31129541
>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0516D04 Length = 140491 Score = 75.8 bits (38), Expect = 6e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 660 cgcggggagctcctcgcaagatgtggcggtagctggaagaaggtgctcaggttcctgcag 719 |||||||||||||| | || || |||| |||||||||||||||||||||||||||||| Sbjct: 40017 cgcggggagctcctggagaggtgcagcggcagctggaagaaggtgctcaggttcctgcag 39958 Query: 720 tcagtggagcaatccttcgacaccgtacatacctcgtccggc 761 || || ||||| || | || ||| || |||||||| |||||| Sbjct: 39957 tccgtcgagcagtcgtccggcactgtccatacctcctccggc 39916 Score = 71.9 bits (36), Expect = 9e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 483 tcgatggaagagttaccaggccacctcatcggggaggtactgagctccggcaggctcgcc 542 |||||||| ||| |||| ||||||| ||||||||||| |||| ||||||| | |||||| Sbjct: 40199 tcgatggaggagctacccagccaccttatcggggaggtcctgacctccggccgcctcgcc 40140 Query: 543 gctggtgacctcgccaggcttgaggctacctgccgcgcgctccgccctctcgctgagcaa 602 || || ||||||| ||||||||||| || || | || |||| |||| ||||| ||||| Sbjct: 40139 gccgggaacctcgcgaggcttgaggccacatgtctcgtgctctgcccgctcgccgagcac 40080 Query: 603 gccg 606 |||| Sbjct: 40079 gccg 40076
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 75.8 bits (38), Expect = 6e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 660 cgcggggagctcctcgcaagatgtggcggtagctggaagaaggtgctcaggttcctgcag 719 |||||||||||||| | || || |||| |||||||||||||||||||||||||||||| Sbjct: 4190 cgcggggagctcctggagaggtgcagcggcagctggaagaaggtgctcaggttcctgcag 4131 Query: 720 tcagtggagcaatccttcgacaccgtacatacctcgtccggc 761 || || ||||| || | || ||| || |||||||| |||||| Sbjct: 4130 tccgtcgagcagtcgtccggcactgtccatacctcctccggc 4089 Score = 71.9 bits (36), Expect = 9e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 483 tcgatggaagagttaccaggccacctcatcggggaggtactgagctccggcaggctcgcc 542 |||||||| ||| |||| ||||||| ||||||||||| |||| ||||||| | |||||| Sbjct: 4372 tcgatggaggagctacccagccaccttatcggggaggtcctgacctccggccgcctcgcc 4313 Query: 543 gctggtgacctcgccaggcttgaggctacctgccgcgcgctccgccctctcgctgagcaa 602 || || ||||||| ||||||||||| || || | || |||| |||| ||||| ||||| Sbjct: 4312 gccgggaacctcgcgaggcttgaggccacatgtctcgtgctctgcccgctcgccgagcac 4253 Query: 603 gccg 606 |||| Sbjct: 4252 gccg 4249
>ref|XM_001142757.1| PREDICTED: Pan troglodytes RAD54 homolog B, transcript variant 1 (RAD54B), mRNA Length = 3080 Score = 46.1 bits (23), Expect = 0.54 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2174 aaaattgtttgtgtggtttaatgtttt 2200 ||||||||||| ||||||||||||||| Sbjct: 3000 aaaattgtttgagtggtttaatgtttt 3026
>ref|XM_528193.2| PREDICTED: Pan troglodytes RAD54 homolog B, transcript variant 2 (RAD54B), mRNA Length = 3042 Score = 46.1 bits (23), Expect = 0.54 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2174 aaaattgtttgtgtggtttaatgtttt 2200 ||||||||||| ||||||||||||||| Sbjct: 2964 aaaattgtttgagtggtttaatgtttt 2990
>ref|NM_105639.1| Arabidopsis thaliana Ran GTPase binding / chromatin binding / zinc ion binding (AT1G69710) mRNA, complete cds Length = 3087 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1161 ggccagcttggtcatggtgaca 1182 |||||||||||||||||||||| Sbjct: 1465 ggccagcttggtcatggtgaca 1486
>gb|AC117509.9| Homo sapiens 3 BAC RP11-31B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113201 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 865 atactacacagtgtgtggcatt 886 |||||||||||||||||||||| Sbjct: 20400 atactacacagtgtgtggcatt 20421
>ref|XM_758279.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0352) partial mRNA Length = 3462 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1494 cacggtgatgaaaatgataaaa 1515 |||||||||||||||||||||| Sbjct: 3274 cacggtgatgaaaatgataaaa 3295
>gb|AC013289.11|AC013289 Arabidopsis thaliana chromosome 1 BAC T6C23 genomic sequence, complete sequence Length = 87148 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1161 ggccagcttggtcatggtgaca 1182 |||||||||||||||||||||| Sbjct: 46250 ggccagcttggtcatggtgaca 46229
>emb|BX255879.6| Zebrafish DNA sequence from clone CH211-232P17 in linkage group 18, complete sequence Length = 173755 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 865 atactacacagtgtgtggcatt 886 |||||||||||||||||||||| Sbjct: 12293 atactacacagtgtgtggcatt 12272
>emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chromosome 4, complete sequence Length = 177314 Score = 44.1 bits (22), Expect = 2.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1626 tggatgggctttgggagtttag 1647 |||||||||||||||||||||| Sbjct: 114617 tggatgggctttgggagtttag 114638
>gb|EF040222.1| Synthetic construct Bacillus anthracis clone FLH247967.01L BA3866 gene, complete sequence Length = 1008 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 396 aggtatcgtgtttggttttgg 416
>gb|CP000485.1| Bacillus thuringiensis str. Al Hakam, complete genome Length = 5257091 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 3566641 aggtatcgtgtttggttttgg 3566621
>gb|AC186076.9| Canis Familiaris chromosome 12, clone XX-107K19, complete sequence Length = 222031 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1712 tcactatgtctctcaaataag 1732 ||||||||||||||||||||| Sbjct: 157784 tcactatgtctctcaaataag 157804
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 3566401 aggtatcgtgtttggttttgg 3566381
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 cagtttctgcttctgccgact 152 ||||||||||||||||||||| Sbjct: 63354 cagtttctgcttctgccgact 63334
>gb|AC118802.7| Rattus norvegicus 13 BAC CH230-72B9 (Children's Hospital Oakland Research Institute) complete sequence Length = 239935 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 ctggaagaaggtgctcaggtt 712 ||||||||||||||||||||| Sbjct: 143360 ctggaagaaggtgctcaggtt 143340
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 3538361 aggtatcgtgtttggttttgg 3538341
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 3538935 aggtatcgtgtttggttttgg 3538915
>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence Length = 172617 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1498 gtgatgaaaatgataaaacta 1518 ||||||||||||||||||||| Sbjct: 66312 gtgatgaaaatgataaaacta 66292
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 3619761 aggtatcgtgtttggttttgg 3619741
>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence Length = 176916 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1498 gtgatgaaaatgataaaacta 1518 ||||||||||||||||||||| Sbjct: 139107 gtgatgaaaatgataaaacta 139127
>gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, complete sequence Length = 151993 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2125 agtaatttggcaaatgtatta 2145 ||||||||||||||||||||| Sbjct: 7748 agtaatttggcaaatgtatta 7768
>gb|AC111280.7| Rattus norvegicus 13 BAC CH230-51N9 (Children's Hospital Oakland Research Institute) complete sequence Length = 216192 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 692 ctggaagaaggtgctcaggtt 712 ||||||||||||||||||||| Sbjct: 29972 ctggaagaaggtgctcaggtt 29952
>gb|AC016931.21| Homo sapiens 3 BAC RP11-22E12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169032 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2169 tgtataaaattgtttgtgtgg 2189 ||||||||||||||||||||| Sbjct: 43069 tgtataaaattgtttgtgtgg 43089
>ref|XM_741232.1| Aspergillus fumigatus Af293 C6 zinc cluster transcription factor (Afu4g01330) partial mRNA Length = 810 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 540 gccgctggtgacctcgccagg 560 ||||||||||||||||||||| Sbjct: 432 gccgctggtgacctcgccagg 452
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 cagtttctgcttctgccgact 152 ||||||||||||||||||||| Sbjct: 15890756 cagtttctgcttctgccgact 15890736
>emb|AL590075.8| Human DNA sequence from clone RP11-462L13 on chromosome X, complete sequence Length = 135711 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 2086 agaaatggacagtgcagtagttatagtag 2114 |||||||||||| |||||| ||||||||| Sbjct: 76536 agaaatggacagagcagtatttatagtag 76564
>emb|AL136362.10| Human DNA sequence from clone RP13-136L2 on chromosome X Contains a eukaryotic translation initiation factor 4A, isoform 1 (EIF4A1) pseudogene, complete sequence Length = 135240 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2172 ataaaattgtttgtgtggttt 2192 ||||||||||||||||||||| Sbjct: 25002 ataaaattgtttgtgtggttt 25022
>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0014K08 Length = 177263 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 ggaatctgttggatctgattt 259 ||||||||||||||||||||| Sbjct: 55866 ggaatctgttggatctgattt 55886
>gb|AC110757.3| Homo sapiens BAC clone RP11-10J6 from 4, complete sequence Length = 77313 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1984 atcttatagtgaataataatg 2004 ||||||||||||||||||||| Sbjct: 28419 atcttatagtgaataataatg 28439
>emb|CR388403.8| Zebrafish DNA sequence from clone CH211-153C18 in linkage group 2, complete sequence Length = 159100 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1863 aaaagtagtattgaagatata 1883 ||||||||||||||||||||| Sbjct: 93413 aaaagtagtattgaagatata 93393
>gb|AC010685.3|AC010685 Homo sapiens BAC clone RP11-465A8 from Y, complete sequence Length = 160302 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2172 ataaaattgtttgtgtggttt 2192 ||||||||||||||||||||| Sbjct: 131385 ataaaattgtttgtgtggttt 131405
>gb|AC012087.10|AC012087 Homo sapiens 3 BAC RP11-317L10,RP11-150K6,RP11-68D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194635 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2125 agtaatttggcaaatgtatta 2145 ||||||||||||||||||||| Sbjct: 83181 agtaatttggcaaatgtatta 83161
>emb|BX571979.8| Zebrafish DNA sequence from clone DKEYP-51C11 in linkage group 13, complete sequence Length = 165275 Score = 42.1 bits (21), Expect = 8.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 208 gttgctggttcgagcttcaagtggg 232 ||||||||||||||| ||||||||| Sbjct: 42276 gttgctggttcgagcctcaagtggg 42252
>gb|AC009430.2|AC009430 Homo sapiens, clone RP11-45O17, complete sequence Length = 156454 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 2086 agaaatggacagtgcagtagttatagtag 2114 |||||||||||| |||||| ||||||||| Sbjct: 75730 agaaatggacagagcagtatttatagtag 75702
>gb|AY109061.1| Zea mays PCO147587 mRNA sequence Length = 410 Score = 42.1 bits (21), Expect = 8.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 341 ccatttcgatacgctcgtccggatctttggatgattccgatcgat 385 ||||||||| ||| || ||||||| ||||||| ||||||||||| Sbjct: 349 ccatttcgacccgcgcggccggatccttggatggttccgatcgat 393
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1769 aggtatcgtgtttggttttgg 1789 ||||||||||||||||||||| Sbjct: 3538234 aggtatcgtgtttggttttgg 3538214
>emb|BX001003.6| Zebrafish DNA sequence from clone CH211-215E7, complete sequence Length = 212403 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1775 cgtgtttggttttggagacaa 1795 ||||||||||||||||||||| Sbjct: 102774 cgtgtttggttttggagacaa 102754
>gb|AC087780.19| Mus musculus strain C57BL/6J chromosome 1 clone rp23-324b17, complete sequence Length = 206924 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1958 tggttaaattcaaggctgaga 1978 ||||||||||||||||||||| Sbjct: 143418 tggttaaattcaaggctgaga 143438
>emb|CT573097.3| RP43-080H03, complete sequence Length = 174747 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 2086 agaaatggacagtgcagtagttatagtag 2114 |||||||||||| |||||| ||||||||| Sbjct: 173539 agaaatggacagagcagtatttatagtag 173511
>emb|AL929141.7| Zebrafish DNA sequence from clone CH211-149P5 in linkage group 18, complete sequence Length = 182116 Score = 42.1 bits (21), Expect = 8.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1775 cgtgtttggttttggagacaa 1795 ||||||||||||||||||||| Sbjct: 173168 cgtgtttggttttggagacaa 173188
>emb|AL713894.12| Mouse DNA sequence from clone RP23-48J18 on chromosome X, complete sequence Length = 264395 Score = 42.1 bits (21), Expect = 8.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1985 tcttatagtgaataataatgagcatatgt 2013 |||| ||||||||||||||||| |||||| Sbjct: 54324 tcttctagtgaataataatgagtatatgt 54296 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 375,078,142 Number of extensions: 19750168 Number of successful extensions: 102840 Number of sequences better than 10.0: 49 Number of HSP's gapped: 102833 Number of HSP's successfully gapped: 70 Length of query: 2217 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2194 Effective length of database: 18,503,978,556 Effective search space: 40597728951864 Effective search space used: 40597728951864 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
