| Clone Name | FLbaf116g07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001066192.1| Oryza sativa (japonica cultivar-group) Os07g0485400 (Os07g0485400) mRNA, complete cds Length = 1776 Score = 718 bits (362), Expect = 0.0 Identities = 687/797 (86%), Gaps = 3/797 (0%) Strand = Plus / Plus Query: 196 cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 255 ||||||| ||||||||||||||| || | ||| ||||||| || || |||||||||| Sbjct: 212 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 271 Query: 256 aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 315 ||||| | ||| | | ||||| || ||| |||| |||||||||||||||||||||||| Sbjct: 272 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 331 Query: 316 gccgtgcccagaggaccgtcacattcgtggaggttaatgatggatcttgcttgtccaata 375 |||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct: 332 gccgcgcccagaggaccgtcaccttcgtcgaggttaatgatggttcttgcttgtccaaca 391 Query: 376 tgcaatgtgtgttaactcctgaaacagaaggctatgaccagatagactctatcactacgg 435 |||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 392 tgcaatgtgtattgactcctgatacagaaggctacgaccagatagactctatcactactg 451 Query: 436 gggcctcagttttagtggagggagttgtagcaagcagccaaggcggtaagcagaaagtgg 495 ||||||| || |||||||| |||||| |||||||||||||||| ||||| || ||||||| Sbjct: 452 gggcctctgtgttagtggaaggagttatagcaagcagccaaggtggtaaacaaaaagtgg 511 Query: 496 acctaaaggtttcaaagatcattgtgattggggagagtgatcccacatcttttcctatac 555 | | |||||||||||||||| ||||||||| || |||||||| |||||||||||||||| Sbjct: 512 agttgaaggtttcaaagatcagtgtgattggagaaagtgatccaacatcttttcctatac 571 Query: 556 agaagaaacgagcatcaagagaatttctgaggactgtggcacacctccgtcctcggacaa 615 | ||||| || |||||||||||||||||||| ||||| || || |||||||||||||||| Sbjct: 572 aaaagaagcgggcatcaagagaatttctgagaactgtagcccatctccgtcctcggacaa 631 Query: 616 acacttttggtgccgtggcaagagtaagaaatgctctggcatatgcaactcataannnnn 675 | |||||||| || ||||||||||| ||||||||| ||||||| ||||| || || Sbjct: 632 atacttttggcgcagtggcaagagtgagaaatgctttggcatacgcaacccacaaatttt 691 Query: 676 nncaagacaatggatttatttgggtatcaagccctattattactgcctcagattgtgaag 735 |||||||| |||||| |||||||| ||||||||||||| || || ||||| ||||||| Sbjct: 692 ttcaagacaacggatttgtttgggtagcaagccctattatcacagcatcagactgtgaag 751 Query: 736 gagcgggggagcagttctatgtcactactttgctttcaaatagtgctgaaggcggctgcc 795 |||| ||||||||||| ||||| || || ||| |||| |||||||||||||| || | | Sbjct: 752 gagcaggggagcagttttatgtgacaacattgatttcgaatagtgctgaaggtggttctc 811 Query: 796 tagtcaacagcattcctt---cgaaagatggaagggtcgattggtcacaggatttcttct 852 ||||||| ||||||| | || ||||||||||| |||||||||||||||||||||| Sbjct: 812 tagtcaaggatattccttctactaaggatggaagggttgattggtcacaggatttcttct 871 Query: 853 gcaaaccagcatttctgacggtgtctggacaactgaatggcgaaacatatgcttcagccc 912 ||||||||||||||||||| |||||||| ||||||||||| |||||||| ||| |||| | Sbjct: 872 gcaaaccagcatttctgacagtgtctgggcaactgaatggtgaaacatacgctacagctc 931 Query: 913 tttctgatatttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggc 972 | || ||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| | Sbjct: 932 tatcagatgtttacacttttggtccaacatttagagctgaaaattcaaacacctcaagac 991 Query: 973 atttggctgaattttgg 989 ||||||||||||||||| Sbjct: 992 atttggctgaattttgg 1008 Score = 565 bits (285), Expect = e-157 Identities = 479/546 (87%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | Sbjct: 1041 gatgattgagcctgaacttgcctttgcggatctaaatgatgacatggcatgtgcgagttc 1100 Query: 1049 atatctccagtatgtagtaaagtacattcttgagaactgcaaagatgatatggannnnnn 1108 |||||||||||||||||| ||||| |||| |||||||||||||| |||||||| Sbjct: 1101 atatctccagtatgtagtgaagtatgttctagagaactgcaaagaagatatggatttctt 1160 Query: 1109 ngatacgtgggttgagaaagggatcatagatagactaaataatgtagctgagaaaaactt 1168 |||| ||| |||| ||||||||||| |||||| ||||| | |||| |||||||||||| Sbjct: 1161 taatacatggattgaaaaagggatcatcgatagattaaatgacgtagttgagaaaaactt 1220 Query: 1169 tgttcagatgtcatattctgatgctatcaagctacttattggctccaacaagaaatttga 1228 |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||||| Sbjct: 1221 tgttcacttgtcatattctgatgctattgagctacttgttgggtccaagaagaaatttga 1280 Query: 1229 gttcccggtgaagtgggggttggatttgcaaagtgagcatgaaagatatatcacagaagt 1288 ||||||||| || ||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1281 gttcccggtcaaatggggattggatctgcaaagtgagcatgaaagatatatcacagaagt 1340 Query: 1289 cgcatttggcgggcatcctgtaataattagagattatccaaaggaaattaaggctttcta 1348 || ||||| |||| || || |||||||||||||||||||||||||| || |||||||| Sbjct: 1341 tgcttttggtgggcgcccggtgataattagagattatccaaaggaaatcaaagctttcta 1400 Query: 1349 tatgcgacaaaacgatgacgggaaaacggttgctgcaatggacctattggttccccgggt 1408 ||||||| | || ||||| || ||||| |||||||||||||| ||||||||||| ||||| Sbjct: 1401 tatgcgagagaatgatgatggtaaaacagttgctgcaatggatctattggttcctcgggt 1460 Query: 1409 aggtgaacttattggaggaagccagagagaagaacggcttgattaccttgaagctcggct 1468 |||||||| ||||| |||||||| || |||||||| |||||||||||||||||||| | Sbjct: 1461 tggtgaactcattggtggaagccaaagggaagaacgtcttgattaccttgaagctcgctt 1520 Query: 1469 ggatgaatcaaatcttaacaaagatagctactggtggtatttggatctgcggcgatatgg 1528 |||||| | |||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct: 1521 ggatgagttaaatcttaacaaagatagctactggtggtacttagatctacgtcgatatgg 1580 Query: 1529 atcagt 1534 |||||| Sbjct: 1581 atcagt 1586 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 tggcgccgctactgcgccgccgcgc 168 |||||||||| |||||||||||||| Sbjct: 133 tggcgccgcttctgcgccgccgcgc 157
>gb|AY107643.1| Zea mays PCO147259 mRNA sequence Length = 652 Score = 373 bits (188), Expect = 2e-99 Identities = 404/476 (84%) Strand = Plus / Plus Query: 1131 atcatagatagactaaataatgtagctgagaaaaactttgttcagatgtcatattctgat 1190 ||||||||| | ||||| |||||| ||||| ||||| ||||| |||| || ||||| Sbjct: 3 atcatagatcggttaaatgatgtagtagagaagaacttcgttcacctgtcttacactgat 62 Query: 1191 gctatcaagctacttattggctccaacaagaaatttgagttcccggtgaagtgggggttg 1250 ||| | |||||||| |||| ||||| ||| |||| ||||||||||| |||||||| ||| Sbjct: 63 gctgttgagctacttcttgggtccaagaaggaattcgagttcccggtaaagtggggtttg 122 Query: 1251 gatttgcaaagtgagcatgaaagatatatcacagaagtcgcatttggcgggcatcctgta 1310 ||| | ||||| |||||||| |||||||||||||||| || ||||| |||| |||||| Sbjct: 123 gatcttcaaagcgagcatgagcgatatatcacagaagttgcctttggtgggcgccctgta 182 Query: 1311 ataattagagattatccaaaggaaattaaggctttctatatgcgacaaaacgatgacggg 1370 |||||||||||||| |||||||| || || |||||||||||| || |||| ||||| ||| Sbjct: 183 ataattagagattacccaaaggagatcaaagctttctatatgagagaaaatgatgatggg 242 Query: 1371 aaaacggttgctgcaatggacctattggttccccgggtaggtgaacttattggaggaagc 1430 || || |||||||||||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct: 243 aagacagttgctgcaatggatctgttggttcctcgggttggtgaacttattggaggaagc 302 Query: 1431 cagagagaagaacggcttgattaccttgaagctcggctggatgaatcaaatcttaacaaa 1490 ||||| ||||| || ||||||||||||||||| ||| |||| || |||||| || || Sbjct: 303 cagagggaagagcgtcttgattaccttgaagcccggttggacgagcaaaatctgaataag 362 Query: 1491 gatagctactggtggtatttggatctgcggcgatatggatcagttcctcatgctggtttt 1550 || |||||||||||||||||||| || || ||||||||||||||||| || |||||||| Sbjct: 363 gagagctactggtggtatttggacctacgacgatatggatcagttccacacgctggtttc 422 Query: 1551 ggccttggatttgaacggcttgtacagtttgcaaccggaatagacaacatcagaga 1606 || || |||||||| ||||||||||||||||| || ||||| |||||||||||||| Sbjct: 423 ggtctcggatttgagcggcttgtacagtttgctactggaatggacaacatcagaga 478
>gb|BT009053.1| Triticum aestivum clone wdr1.pk0005.f7:fis, full insert mRNA sequence Length = 372 Score = 365 bits (184), Expect = 4e-97 Identities = 245/264 (92%), Gaps = 6/264 (2%) Strand = Plus / Plus Query: 1481 tcttaacaaagatagctactggtggtatttggatctgcggcgatatggatcagttcctca 1540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 tcttaacaaagatagctactggtggtatttggatctgcggcgatatggatcagttcctca 67 Query: 1541 tgctggttttggccttggatttgaacggcttgtacagtttgcaaccggaatagacaacat 1600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 tgctggttttggccttggatttgaacggcttgtacagtttgcaaccggaatagacaacat 127 Query: 1601 cagagatgccattccattccccagggttcctggttctgctgaattttagcactcgaaaag 1660 |||||| ||||||||||| |||||||||||||||||||| || |||||||||| ||| || Sbjct: 128 cagagacgccattccatttcccagggttcctggttctgcggagttttagcacttgaagag 187 Query: 1661 tgttcatgtataatctttagaagcattcttgcctgggatttgaagaagaccttacgttga 1720 || | |||||||||| || |||||||||||||| ||| |||||||| ||||||| |||| Sbjct: 188 tg--cgtgtataatctctaaaagcattcttgcctcggacttgaagaaaaccttacattga 245 Query: 1721 tttg----ttgtaaagagtttacc 1740 |||| |||||||||||||||| Sbjct: 246 tttgttcattgtaaagagtttacc 269
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 143 bits (72), Expect = 3e-30 Identities = 111/124 (89%) Strand = Plus / Plus Query: 1410 ggtgaacttattggaggaagccagagagaagaacggcttgattaccttgaagctcggctg 1469 |||||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || Sbjct: 17790765 ggtgaactcattggtggaagccaaagggaagaacgtcttgattaccttgaagctcgcttg 17790824 Query: 1470 gatgaatcaaatcttaacaaagatagctactggtggtatttggatctgcggcgatatgga 1529 ||||| | |||||||||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 17790825 gatgagttaaatcttaacaaagatagctactggtggtacttagatctacgtcgatatgga 17790884 Query: 1530 tcag 1533 |||| Sbjct: 17790885 tcag 17790888 Score = 125 bits (63), Expect = 6e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | Sbjct: 17789487 gatgattgagcctgaacttgcctttgcggatctaaatgatgacatggcatgtgcgagttc 17789546 Query: 1049 atatctccagtatgtagta 1067 ||||||||||||||||||| Sbjct: 17789547 atatctccagtatgtagta 17789565 Score = 121 bits (61), Expect = 9e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 521 gattggggagagtgatcccacatcttttcctatacagaagaaacgagcatcaagagaatt 580 |||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 17787381 gattggagaaagtgatccaacatcttttcctatacaaaagaagcgggcatcaagagaatt 17787440 Query: 581 tctgaggactgtggcacacctccgtcctcggacaaacacttttgg 625 |||||| ||||| || || ||||||||||||||||| |||||||| Sbjct: 17787441 tctgagaactgtagcccatctccgtcctcggacaaatacttttgg 17787485 Score = 119 bits (60), Expect = 4e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 414 cagatagactctatcactacgggggcctcagttttagtggagggagttgtagcaagcagc 473 |||||||||||||||||||| |||||||| || |||||||| |||||| ||||||||||| Sbjct: 17786761 cagatagactctatcactactggggcctctgtgttagtggaaggagttatagcaagcagc 17786820 Query: 474 caaggcggtaagcagaaagtggacctaaaggtttcaaagatcattgtg 521 ||||| ||||| || |||||||| | |||||||||||||||| |||| Sbjct: 17786821 caaggtggtaaacaaaaagtggagttgaaggtttcaaagatcagtgtg 17786868 Score = 117 bits (59), Expect = 1e-22 Identities = 104/119 (87%) Strand = Plus / Plus Query: 1531 cagttcctcatgctggttttggccttggatttgaacggcttgtacagtttgcaaccggaa 1590 |||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||| Sbjct: 17791024 cagttcctcatgctggttttggtcttggatttgaaagactagtacagtttgcaactggaa 17791083 Query: 1591 tagacaacatcagagatgccattccattccccagggttcctggttctgctgaattttag 1649 | |||||||| ||||| |||||||||| ||| ||||||| || ||||| || |||||| Sbjct: 17791084 tggacaacattagagacaccattccatttccccgggttccaggctctgcagagttttag 17791142 Score = 109 bits (55), Expect = 4e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 1242 tgggggttggatttgcaaagtgagcatgaaagatatatcacagaagtcgcatttggcggg 1301 ||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 17790370 tggggattggatctgcaaagtgagcatgaaagatatatcacagaagttgcttttggtggg 17790429 Query: 1302 catcctgtaataattagagattatccaaagg 1332 | || || |||||||||||||||||||||| Sbjct: 17790430 cgcccggtgataattagagattatccaaagg 17790460 Score = 107 bits (54), Expect = 1e-19 Identities = 129/154 (83%) Strand = Plus / Plus Query: 196 cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 255 ||||||| ||||||||||||||| || | ||| ||||||| || || |||||||||| Sbjct: 17785257 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 17785316 Query: 256 aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 315 ||||| | ||| | | ||||| || ||| |||| |||||||||||||||||||||||| Sbjct: 17785317 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 17785376 Query: 316 gccgtgcccagaggaccgtcacattcgtggaggt 349 |||| ||||||||||||||||| ||||| ||||| Sbjct: 17785377 gccgcgcccagaggaccgtcaccttcgtcgaggt 17785410 Score = 107 bits (54), Expect = 1e-19 Identities = 78/86 (90%) Strand = Plus / Plus Query: 1152 gtagctgagaaaaactttgttcagatgtcatattctgatgctatcaagctacttattggc 1211 |||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||| Sbjct: 17789898 gtagttgagaaaaactttgttcacttgtcatattctgatgctattgagctacttgttggg 17789957 Query: 1212 tccaacaagaaatttgagttcccggt 1237 ||||| |||||||||||||||||||| Sbjct: 17789958 tccaagaagaaatttgagttcccggt 17789983 Score = 101 bits (51), Expect = 9e-18 Identities = 107/128 (83%) Strand = Plus / Plus Query: 630 gtggcaagagtaagaaatgctctggcatatgcaactcataannnnnnncaagacaatgga 689 ||||||||||| ||||||||| ||||||| ||||| || || |||||||| ||| Sbjct: 17788084 gtggcaagagtgagaaatgctttggcatacgcaacccacaaattttttcaagacaacgga 17788143 Query: 690 tttatttgggtatcaagccctattattactgcctcagattgtgaaggagcgggggagcag 749 ||| |||||||| ||||||||||||| || || ||||| ||||||||||| ||||||||| Sbjct: 17788144 tttgtttgggtagcaagccctattatcacagcatcagactgtgaaggagcaggggagcag 17788203 Query: 750 ttctatgt 757 || ||||| Sbjct: 17788204 ttttatgt 17788211 Score = 99.6 bits (50), Expect = 3e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 841 aggatttcttctgcaaaccagcatttctgacggtgtctggacaactgaatggcgaaacat 900 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 17789139 aggatttcttctgcaaaccagcatttctgacagtgtctgggcaactgaatggtgaaacat 17789198 Query: 901 atgcttcagc 910 | ||| |||| Sbjct: 17789199 acgctacagc 17789208 Score = 95.6 bits (48), Expect = 5e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 ||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 17789319 tttacacttttggtccaacatttagagctgaaaattcaaacacctcaagacatttggctg 17789378 Query: 982 aattttgg 989 |||||||| Sbjct: 17789379 aattttgg 17789386 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 346 aggttaatgatggatcttgcttgtccaatatgcaatgtgtgttaactcctgaaacagaag 405 ||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 17786409 aggttaatgatggttcttgcttgtccaacatgcaatgtgtattgactcctgatacagaag 17786468 Query: 406 gctatgaccag 416 |||| |||||| Sbjct: 17786469 gctacgaccag 17786479 Score = 79.8 bits (40), Expect = 3e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 1330 aggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgg 1389 ||||||| || ||||||||||||||| | || ||||| || ||||| ||||||||||||| Sbjct: 17790539 aggaaatcaaagctttctatatgcgagagaatgatgatggtaaaacagttgctgcaatgg 17790598 Query: 1390 acctattggttccccgggta 1409 | ||||||||||| |||||| Sbjct: 17790599 atctattggttcctcgggta 17790618 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 tggcgccgctactgcgccgccgcgc 168 |||||||||| |||||||||||||| Sbjct: 17785178 tggcgccgcttctgcgccgccgcgc 17785202 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 819 gatggaagggtcgattggtcacagg 843 ||||||||||| ||||||||||||| Sbjct: 17788917 gatggaagggttgattggtcacagg 17788941
>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0683C09 Length = 185139 Score = 143 bits (72), Expect = 3e-30 Identities = 111/124 (89%) Strand = Plus / Plus Query: 1410 ggtgaacttattggaggaagccagagagaagaacggcttgattaccttgaagctcggctg 1469 |||||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || Sbjct: 17757 ggtgaactcattggtggaagccaaagggaagaacgtcttgattaccttgaagctcgcttg 17816 Query: 1470 gatgaatcaaatcttaacaaagatagctactggtggtatttggatctgcggcgatatgga 1529 ||||| | |||||||||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 17817 gatgagttaaatcttaacaaagatagctactggtggtacttagatctacgtcgatatgga 17876 Query: 1530 tcag 1533 |||| Sbjct: 17877 tcag 17880 Score = 125 bits (63), Expect = 6e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | Sbjct: 16479 gatgattgagcctgaacttgcctttgcggatctaaatgatgacatggcatgtgcgagttc 16538 Query: 1049 atatctccagtatgtagta 1067 ||||||||||||||||||| Sbjct: 16539 atatctccagtatgtagta 16557 Score = 121 bits (61), Expect = 9e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 521 gattggggagagtgatcccacatcttttcctatacagaagaaacgagcatcaagagaatt 580 |||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 14373 gattggagaaagtgatccaacatcttttcctatacaaaagaagcgggcatcaagagaatt 14432 Query: 581 tctgaggactgtggcacacctccgtcctcggacaaacacttttgg 625 |||||| ||||| || || ||||||||||||||||| |||||||| Sbjct: 14433 tctgagaactgtagcccatctccgtcctcggacaaatacttttgg 14477 Score = 119 bits (60), Expect = 4e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 414 cagatagactctatcactacgggggcctcagttttagtggagggagttgtagcaagcagc 473 |||||||||||||||||||| |||||||| || |||||||| |||||| ||||||||||| Sbjct: 13753 cagatagactctatcactactggggcctctgtgttagtggaaggagttatagcaagcagc 13812 Query: 474 caaggcggtaagcagaaagtggacctaaaggtttcaaagatcattgtg 521 ||||| ||||| || |||||||| | |||||||||||||||| |||| Sbjct: 13813 caaggtggtaaacaaaaagtggagttgaaggtttcaaagatcagtgtg 13860 Score = 117 bits (59), Expect = 1e-22 Identities = 104/119 (87%) Strand = Plus / Plus Query: 1531 cagttcctcatgctggttttggccttggatttgaacggcttgtacagtttgcaaccggaa 1590 |||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||| Sbjct: 18016 cagttcctcatgctggttttggtcttggatttgaaagactagtacagtttgcaactggaa 18075 Query: 1591 tagacaacatcagagatgccattccattccccagggttcctggttctgctgaattttag 1649 | |||||||| ||||| |||||||||| ||| ||||||| || ||||| || |||||| Sbjct: 18076 tggacaacattagagacaccattccatttccccgggttccaggctctgcagagttttag 18134 Score = 109 bits (55), Expect = 4e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 1242 tgggggttggatttgcaaagtgagcatgaaagatatatcacagaagtcgcatttggcggg 1301 ||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 17362 tggggattggatctgcaaagtgagcatgaaagatatatcacagaagttgcttttggtggg 17421 Query: 1302 catcctgtaataattagagattatccaaagg 1332 | || || |||||||||||||||||||||| Sbjct: 17422 cgcccggtgataattagagattatccaaagg 17452 Score = 107 bits (54), Expect = 1e-19 Identities = 129/154 (83%) Strand = Plus / Plus Query: 196 cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 255 ||||||| ||||||||||||||| || | ||| ||||||| || || |||||||||| Sbjct: 12249 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 12308 Query: 256 aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 315 ||||| | ||| | | ||||| || ||| |||| |||||||||||||||||||||||| Sbjct: 12309 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 12368 Query: 316 gccgtgcccagaggaccgtcacattcgtggaggt 349 |||| ||||||||||||||||| ||||| ||||| Sbjct: 12369 gccgcgcccagaggaccgtcaccttcgtcgaggt 12402 Score = 107 bits (54), Expect = 1e-19 Identities = 78/86 (90%) Strand = Plus / Plus Query: 1152 gtagctgagaaaaactttgttcagatgtcatattctgatgctatcaagctacttattggc 1211 |||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||| Sbjct: 16890 gtagttgagaaaaactttgttcacttgtcatattctgatgctattgagctacttgttggg 16949 Query: 1212 tccaacaagaaatttgagttcccggt 1237 ||||| |||||||||||||||||||| Sbjct: 16950 tccaagaagaaatttgagttcccggt 16975 Score = 101 bits (51), Expect = 9e-18 Identities = 107/128 (83%) Strand = Plus / Plus Query: 630 gtggcaagagtaagaaatgctctggcatatgcaactcataannnnnnncaagacaatgga 689 ||||||||||| ||||||||| ||||||| ||||| || || |||||||| ||| Sbjct: 15076 gtggcaagagtgagaaatgctttggcatacgcaacccacaaattttttcaagacaacgga 15135 Query: 690 tttatttgggtatcaagccctattattactgcctcagattgtgaaggagcgggggagcag 749 ||| |||||||| ||||||||||||| || || ||||| ||||||||||| ||||||||| Sbjct: 15136 tttgtttgggtagcaagccctattatcacagcatcagactgtgaaggagcaggggagcag 15195 Query: 750 ttctatgt 757 || ||||| Sbjct: 15196 ttttatgt 15203 Score = 99.6 bits (50), Expect = 3e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 841 aggatttcttctgcaaaccagcatttctgacggtgtctggacaactgaatggcgaaacat 900 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 16131 aggatttcttctgcaaaccagcatttctgacagtgtctgggcaactgaatggtgaaacat 16190 Query: 901 atgcttcagc 910 | ||| |||| Sbjct: 16191 acgctacagc 16200 Score = 95.6 bits (48), Expect = 5e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 ||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 16311 tttacacttttggtccaacatttagagctgaaaattcaaacacctcaagacatttggctg 16370 Query: 982 aattttgg 989 |||||||| Sbjct: 16371 aattttgg 16378 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 346 aggttaatgatggatcttgcttgtccaatatgcaatgtgtgttaactcctgaaacagaag 405 ||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 13401 aggttaatgatggttcttgcttgtccaacatgcaatgtgtattgactcctgatacagaag 13460 Query: 406 gctatgaccag 416 |||| |||||| Sbjct: 13461 gctacgaccag 13471 Score = 79.8 bits (40), Expect = 3e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 1330 aggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgg 1389 ||||||| || ||||||||||||||| | || ||||| || ||||| ||||||||||||| Sbjct: 17531 aggaaatcaaagctttctatatgcgagagaatgatgatggtaaaacagttgctgcaatgg 17590 Query: 1390 acctattggttccccgggta 1409 | ||||||||||| |||||| Sbjct: 17591 atctattggttcctcgggta 17610 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 tggcgccgctactgcgccgccgcgc 168 |||||||||| |||||||||||||| Sbjct: 12170 tggcgccgcttctgcgccgccgcgc 12194 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 819 gatggaagggtcgattggtcacagg 843 ||||||||||| ||||||||||||| Sbjct: 15909 gatggaagggttgattggtcacagg 15933
>dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1753_E03 Length = 126734 Score = 143 bits (72), Expect = 3e-30 Identities = 111/124 (89%) Strand = Plus / Plus Query: 1410 ggtgaacttattggaggaagccagagagaagaacggcttgattaccttgaagctcggctg 1469 |||||||| ||||| |||||||| || |||||||| |||||||||||||||||||| || Sbjct: 95518 ggtgaactcattggtggaagccaaagggaagaacgtcttgattaccttgaagctcgcttg 95577 Query: 1470 gatgaatcaaatcttaacaaagatagctactggtggtatttggatctgcggcgatatgga 1529 ||||| | |||||||||||||||||||||||||||||| || ||||| || ||||||||| Sbjct: 95578 gatgagttaaatcttaacaaagatagctactggtggtacttagatctacgtcgatatgga 95637 Query: 1530 tcag 1533 |||| Sbjct: 95638 tcag 95641 Score = 125 bits (63), Expect = 6e-25 Identities = 75/79 (94%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | Sbjct: 94240 gatgattgagcctgaacttgcctttgcggatctaaatgatgacatggcatgtgcgagttc 94299 Query: 1049 atatctccagtatgtagta 1067 ||||||||||||||||||| Sbjct: 94300 atatctccagtatgtagta 94318 Score = 121 bits (61), Expect = 9e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 521 gattggggagagtgatcccacatcttttcctatacagaagaaacgagcatcaagagaatt 580 |||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||| Sbjct: 92134 gattggagaaagtgatccaacatcttttcctatacaaaagaagcgggcatcaagagaatt 92193 Query: 581 tctgaggactgtggcacacctccgtcctcggacaaacacttttgg 625 |||||| ||||| || || ||||||||||||||||| |||||||| Sbjct: 92194 tctgagaactgtagcccatctccgtcctcggacaaatacttttgg 92238 Score = 119 bits (60), Expect = 4e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 414 cagatagactctatcactacgggggcctcagttttagtggagggagttgtagcaagcagc 473 |||||||||||||||||||| |||||||| || |||||||| |||||| ||||||||||| Sbjct: 91514 cagatagactctatcactactggggcctctgtgttagtggaaggagttatagcaagcagc 91573 Query: 474 caaggcggtaagcagaaagtggacctaaaggtttcaaagatcattgtg 521 ||||| ||||| || |||||||| | |||||||||||||||| |||| Sbjct: 91574 caaggtggtaaacaaaaagtggagttgaaggtttcaaagatcagtgtg 91621 Score = 117 bits (59), Expect = 1e-22 Identities = 104/119 (87%) Strand = Plus / Plus Query: 1531 cagttcctcatgctggttttggccttggatttgaacggcttgtacagtttgcaaccggaa 1590 |||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||| Sbjct: 95777 cagttcctcatgctggttttggtcttggatttgaaagactagtacagtttgcaactggaa 95836 Query: 1591 tagacaacatcagagatgccattccattccccagggttcctggttctgctgaattttag 1649 | |||||||| ||||| |||||||||| ||| ||||||| || ||||| || |||||| Sbjct: 95837 tggacaacattagagacaccattccatttccccgggttccaggctctgcagagttttag 95895 Score = 109 bits (55), Expect = 4e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 1242 tgggggttggatttgcaaagtgagcatgaaagatatatcacagaagtcgcatttggcggg 1301 ||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 95123 tggggattggatctgcaaagtgagcatgaaagatatatcacagaagttgcttttggtggg 95182 Query: 1302 catcctgtaataattagagattatccaaagg 1332 | || || |||||||||||||||||||||| Sbjct: 95183 cgcccggtgataattagagattatccaaagg 95213 Score = 107 bits (54), Expect = 1e-19 Identities = 129/154 (83%) Strand = Plus / Plus Query: 196 cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 255 ||||||| ||||||||||||||| || | ||| ||||||| || || |||||||||| Sbjct: 90010 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 90069 Query: 256 aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 315 ||||| | ||| | | ||||| || ||| |||| |||||||||||||||||||||||| Sbjct: 90070 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 90129 Query: 316 gccgtgcccagaggaccgtcacattcgtggaggt 349 |||| ||||||||||||||||| ||||| ||||| Sbjct: 90130 gccgcgcccagaggaccgtcaccttcgtcgaggt 90163 Score = 107 bits (54), Expect = 1e-19 Identities = 78/86 (90%) Strand = Plus / Plus Query: 1152 gtagctgagaaaaactttgttcagatgtcatattctgatgctatcaagctacttattggc 1211 |||| |||||||||||||||||| ||||||||||||||||||| |||||||| |||| Sbjct: 94651 gtagttgagaaaaactttgttcacttgtcatattctgatgctattgagctacttgttggg 94710 Query: 1212 tccaacaagaaatttgagttcccggt 1237 ||||| |||||||||||||||||||| Sbjct: 94711 tccaagaagaaatttgagttcccggt 94736 Score = 101 bits (51), Expect = 9e-18 Identities = 107/128 (83%) Strand = Plus / Plus Query: 630 gtggcaagagtaagaaatgctctggcatatgcaactcataannnnnnncaagacaatgga 689 ||||||||||| ||||||||| ||||||| ||||| || || |||||||| ||| Sbjct: 92837 gtggcaagagtgagaaatgctttggcatacgcaacccacaaattttttcaagacaacgga 92896 Query: 690 tttatttgggtatcaagccctattattactgcctcagattgtgaaggagcgggggagcag 749 ||| |||||||| ||||||||||||| || || ||||| ||||||||||| ||||||||| Sbjct: 92897 tttgtttgggtagcaagccctattatcacagcatcagactgtgaaggagcaggggagcag 92956 Query: 750 ttctatgt 757 || ||||| Sbjct: 92957 ttttatgt 92964 Score = 99.6 bits (50), Expect = 3e-17 Identities = 65/70 (92%) Strand = Plus / Plus Query: 841 aggatttcttctgcaaaccagcatttctgacggtgtctggacaactgaatggcgaaacat 900 ||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 93892 aggatttcttctgcaaaccagcatttctgacagtgtctgggcaactgaatggtgaaacat 93951 Query: 901 atgcttcagc 910 | ||| |||| Sbjct: 93952 acgctacagc 93961 Score = 95.6 bits (48), Expect = 5e-16 Identities = 63/68 (92%) Strand = Plus / Plus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 ||||||| |||||||| |||||||| ||||||||||||||||| ||||| |||||||||| Sbjct: 94072 tttacacttttggtccaacatttagagctgaaaattcaaacacctcaagacatttggctg 94131 Query: 982 aattttgg 989 |||||||| Sbjct: 94132 aattttgg 94139 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 346 aggttaatgatggatcttgcttgtccaatatgcaatgtgtgttaactcctgaaacagaag 405 ||||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 91162 aggttaatgatggttcttgcttgtccaacatgcaatgtgtattgactcctgatacagaag 91221 Query: 406 gctatgaccag 416 |||| |||||| Sbjct: 91222 gctacgaccag 91232 Score = 79.8 bits (40), Expect = 3e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 1330 aggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgg 1389 ||||||| || ||||||||||||||| | || ||||| || ||||| ||||||||||||| Sbjct: 95292 aggaaatcaaagctttctatatgcgagagaatgatgatggtaaaacagttgctgcaatgg 95351 Query: 1390 acctattggttccccgggta 1409 | ||||||||||| |||||| Sbjct: 95352 atctattggttcctcgggta 95371 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 tggcgccgctactgcgccgccgcgc 168 |||||||||| |||||||||||||| Sbjct: 89931 tggcgccgcttctgcgccgccgcgc 89955 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 819 gatggaagggtcgattggtcacagg 843 ||||||||||| ||||||||||||| Sbjct: 93670 gatggaagggttgattggtcacagg 93694
>ref|NM_117835.3| Arabidopsis thaliana NS1 (NS1) mRNA, complete cds Length = 1862 Score = 131 bits (66), Expect = 1e-26 Identities = 213/262 (81%) Strand = Plus / Plus Query: 829 tcgattggtcacaggatttcttctgcaaaccagcatttctgacggtgtctggacaactga 888 |||||||||| ||||| || || | ||||||||||| | || || ||||| ||||| | Sbjct: 903 tcgattggtctcaggacttttttgggaaaccagcattcttaaccgtctctgggcaactta 962 Query: 889 atggcgaaacatatgcttcagccctttctgatatttacacatttggtcccacatttaggg 948 |||| ||||| ||||| | || || || ||| | |||||||||||||| |||||| | | Sbjct: 963 atggagaaacttatgcaaccgctctctcagatgtatacacatttggtcctacatttcgag 1022 Query: 949 ctgaaaattcaaacacttcaaggcatttggctgaattttggatgattgagcctgaacttg 1008 |||| ||||| ||||| |||||||| || || ||||| ||||||||||| || ||||||| Sbjct: 1023 ctgagaattccaacacgtcaaggcacttagccgaattctggatgattgaaccagaacttg 1082 Query: 1009 cctttgctgatctaaatgatgacatggcgtgtgcaagtgcatatctccagtatgtagtaa 1068 | ||||| || || ||||||||||||| ||||| | ||| || |||||||| ||||||| Sbjct: 1083 cttttgccgacctggatgatgacatggcctgtgccactgcctacctccagtacgtagtaa 1142 Query: 1069 agtacattcttgagaactgcaa 1090 ||||| ||||||| || ||||| Sbjct: 1143 agtacgttcttgataattgcaa 1164 Score = 87.7 bits (44), Expect = 1e-13 Identities = 143/176 (81%) Strand = Plus / Plus Query: 1215 aacaagaaatttgagttcccggtgaagtgggggttggatttgcaaagtgagcatgaaaga 1274 ||||| ||||| || || ||||||||||||||| ||||| |||| |||||||||||||| Sbjct: 1289 aacaaaaaattcgattttccggtgaagtgggggctggatctgcagagtgagcatgaaagg 1348 Query: 1275 tatatcacagaagtcgcatttggcgggcatcctgtaataattagagattatccaaaggaa 1334 || || ||||||| || ||||| || | ||||| ||||| ||||| ||||| ||||| Sbjct: 1349 tacataacagaagaggcttttgggggtcgacctgtgataataagagactatccgaaggag 1408 Query: 1335 attaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgga 1390 || || || ||||||||||| | |||||||| ||||| || || || |||||||| Sbjct: 1409 atcaaagcattctatatgcgggagaacgatgatgggaagacagtggcagcaatgga 1464 Score = 71.9 bits (36), Expect = 8e-09 Identities = 119/149 (79%) Strand = Plus / Plus Query: 615 aacacttttggtgccgtggcaagagtaagaaatgctctggcatatgcaactcataannnn 674 ||||||||||| || ||||||||||| || ||| ||||||||||||| || || || Sbjct: 683 aacacttttggggcggtggcaagagttaggaatactctggcatatgctacacacaagttc 742 Query: 675 nnncaagacaatggatttatttgggtatcaagccctattattactgcctcagattgtgaa 734 ||||| | ||||||| | ||||| ||||||| ||||| || || || ||||||||| Sbjct: 743 tttcaagaaagtggatttgtctgggtggcaagcccaattatcacagcttcggattgtgaa 802 Query: 735 ggagcgggggagcagttctatgtcactac 763 ||||| || || ||||||| ||||||||| Sbjct: 803 ggagcaggagaacagttctgtgtcactac 831 Score = 48.1 bits (24), Expect = 0.11 Identities = 57/68 (83%) Strand = Plus / Plus Query: 1485 aacaaagatagctactggtggtatttggatctgcggcgatatggatcagttcctcatgct 1544 |||||||| |||||||||||||| | || || || || ||||| |||||||||||||| Sbjct: 1559 aacaaagagagctactggtggtacctcgacctccgccgctatggttcagttcctcatgca 1618 Query: 1545 ggttttgg 1552 || ||||| Sbjct: 1619 ggatttgg 1626
>gb|AY078967.1| Arabidopsis thaliana AT4g17300/dl4685w mRNA, complete cds Length = 1846 Score = 131 bits (66), Expect = 1e-26 Identities = 213/262 (81%) Strand = Plus / Plus Query: 829 tcgattggtcacaggatttcttctgcaaaccagcatttctgacggtgtctggacaactga 888 |||||||||| ||||| || || | ||||||||||| | || || ||||| ||||| | Sbjct: 903 tcgattggtctcaggacttttttgggaaaccagcattcttaaccgtctctgggcaactta 962 Query: 889 atggcgaaacatatgcttcagccctttctgatatttacacatttggtcccacatttaggg 948 |||| ||||| ||||| | || || || ||| | |||||||||||||| |||||| | | Sbjct: 963 atggagaaacttatgcaaccgctctctcagatgtatacacatttggtcctacatttcgag 1022 Query: 949 ctgaaaattcaaacacttcaaggcatttggctgaattttggatgattgagcctgaacttg 1008 |||| ||||| ||||| |||||||| || || ||||| ||||||||||| || ||||||| Sbjct: 1023 ctgagaattccaacacgtcaaggcacttagccgaattctggatgattgaaccagaacttg 1082 Query: 1009 cctttgctgatctaaatgatgacatggcgtgtgcaagtgcatatctccagtatgtagtaa 1068 | ||||| || || ||||||||||||| ||||| | ||| || |||||||| ||||||| Sbjct: 1083 cttttgccgacctggatgatgacatggcctgtgccactgcctacctccagtacgtagtaa 1142 Query: 1069 agtacattcttgagaactgcaa 1090 ||||| ||||||| || ||||| Sbjct: 1143 agtacgttcttgataattgcaa 1164 Score = 87.7 bits (44), Expect = 1e-13 Identities = 143/176 (81%) Strand = Plus / Plus Query: 1215 aacaagaaatttgagttcccggtgaagtgggggttggatttgcaaagtgagcatgaaaga 1274 ||||| ||||| || || ||||||||||||||| ||||| |||| |||||||||||||| Sbjct: 1289 aacaaaaaattcgattttccggtgaagtgggggctggatctgcagagtgagcatgaaagg 1348 Query: 1275 tatatcacagaagtcgcatttggcgggcatcctgtaataattagagattatccaaaggaa 1334 || || ||||||| || ||||| || | ||||| ||||| ||||| ||||| ||||| Sbjct: 1349 tacataacagaagaggcttttgggggtcgacctgtgataataagagactatccgaaggag 1408 Query: 1335 attaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgga 1390 || || || ||||||||||| | |||||||| ||||| || || || |||||||| Sbjct: 1409 atcaaagcattctatatgcgggagaacgatgatgggaagacagtggcagcaatgga 1464 Score = 71.9 bits (36), Expect = 8e-09 Identities = 119/149 (79%) Strand = Plus / Plus Query: 615 aacacttttggtgccgtggcaagagtaagaaatgctctggcatatgcaactcataannnn 674 ||||||||||| || ||||||||||| || ||| ||||||||||||| || || || Sbjct: 683 aacacttttggggcggtggcaagagttaggaatactctggcatatgctacacacaagttc 742 Query: 675 nnncaagacaatggatttatttgggtatcaagccctattattactgcctcagattgtgaa 734 ||||| | ||||||| | ||||| ||||||| ||||| || || || ||||||||| Sbjct: 743 tttcaagaaagtggatttgtctgggtggcaagcccaattatcacagcttcggattgtgaa 802 Query: 735 ggagcgggggagcagttctatgtcactac 763 ||||| || || ||||||| ||||||||| Sbjct: 803 ggagcaggagaacagttctgtgtcactac 831 Score = 48.1 bits (24), Expect = 0.11 Identities = 57/68 (83%) Strand = Plus / Plus Query: 1485 aacaaagatagctactggtggtatttggatctgcggcgatatggatcagttcctcatgct 1544 |||||||| |||||||||||||| | || || || || ||||| |||||||||||||| Sbjct: 1559 aacaaagagagctactggtggtacctcgacctccgccgctatggttcagttcctcatgca 1618 Query: 1545 ggttttgg 1552 || ||||| Sbjct: 1619 ggatttgg 1626
>emb|AJ222644.1|ATAJ644 Arabidopsis thaliana NS1 mRNA for asparaginyl-tRNA synthetase Length = 1859 Score = 131 bits (66), Expect = 1e-26 Identities = 213/262 (81%) Strand = Plus / Plus Query: 829 tcgattggtcacaggatttcttctgcaaaccagcatttctgacggtgtctggacaactga 888 |||||||||| ||||| || || | ||||||||||| | || || ||||| ||||| | Sbjct: 881 tcgattggtctcaggacttttttgggaaaccagcattcttaaccgtctctgggcaactta 940 Query: 889 atggcgaaacatatgcttcagccctttctgatatttacacatttggtcccacatttaggg 948 |||| ||||| ||||| | || || || ||| | |||||||||||||| |||||| | | Sbjct: 941 atggagaaacttatgcaaccgctctctcagatgtatacacatttggtcctacatttcgag 1000 Query: 949 ctgaaaattcaaacacttcaaggcatttggctgaattttggatgattgagcctgaacttg 1008 |||| ||||| ||||| |||||||| || || ||||| ||||||||||| || ||||||| Sbjct: 1001 ctgagaattccaacacgtcaaggcacttagccgaattctggatgattgaaccagaacttg 1060 Query: 1009 cctttgctgatctaaatgatgacatggcgtgtgcaagtgcatatctccagtatgtagtaa 1068 | ||||| || || ||||||||||||| ||||| | ||| || |||||||| ||||||| Sbjct: 1061 cttttgccgacctggatgatgacatggcctgtgccactgcctacctccagtacgtagtaa 1120 Query: 1069 agtacattcttgagaactgcaa 1090 ||||| ||||||| || ||||| Sbjct: 1121 agtacgttcttgataattgcaa 1142 Score = 87.7 bits (44), Expect = 1e-13 Identities = 143/176 (81%) Strand = Plus / Plus Query: 1215 aacaagaaatttgagttcccggtgaagtgggggttggatttgcaaagtgagcatgaaaga 1274 ||||| ||||| || || ||||||||||||||| ||||| |||| |||||||||||||| Sbjct: 1267 aacaaaaaattcgattttccggtgaagtgggggctggatctgcagagtgagcatgaaagg 1326 Query: 1275 tatatcacagaagtcgcatttggcgggcatcctgtaataattagagattatccaaaggaa 1334 || || ||||||| || ||||| || | ||||| ||||| ||||| ||||| ||||| Sbjct: 1327 tacataacagaagaggcttttgggggtcgacctgtgataataagagactatccgaaggag 1386 Query: 1335 attaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgga 1390 || || || ||||||||||| | |||||||| ||||| || || || |||||||| Sbjct: 1387 atcaaagcattctatatgcgggagaacgatgatgggaagacagtggcagcaatgga 1442 Score = 71.9 bits (36), Expect = 8e-09 Identities = 119/149 (79%) Strand = Plus / Plus Query: 615 aacacttttggtgccgtggcaagagtaagaaatgctctggcatatgcaactcataannnn 674 ||||||||||| || ||||||||||| || ||| ||||||||||||| || || || Sbjct: 661 aacacttttggggcggtggcaagagttaggaatactctggcatatgctacacacaagttc 720 Query: 675 nnncaagacaatggatttatttgggtatcaagccctattattactgcctcagattgtgaa 734 ||||| | ||||||| | ||||| ||||||| ||||| || || || ||||||||| Sbjct: 721 tttcaagaaagtggatttgtctgggtggcaagcccaattatcacagcttcggattgtgaa 780 Query: 735 ggagcgggggagcagttctatgtcactac 763 ||||| || || ||||||| ||||||||| Sbjct: 781 ggagcaggagaacagttctgtgtcactac 809 Score = 48.1 bits (24), Expect = 0.11 Identities = 57/68 (83%) Strand = Plus / Plus Query: 1485 aacaaagatagctactggtggtatttggatctgcggcgatatggatcagttcctcatgct 1544 |||||||| |||||||||||||| | || || || || ||||| |||||||||||||| Sbjct: 1537 aacaaagagagctactggtggtacctcgacctccgccgctatggttcagttcctcatgca 1596 Query: 1545 ggttttgg 1552 || ||||| Sbjct: 1597 ggatttgg 1604
>gb|AC138087.17| Medicago truncatula clone mth2-22p8, complete sequence Length = 130194 Score = 109 bits (55), Expect = 4e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 |||||||||||| || ||||| |||||||||||||||||||||||||| ||||||| ||| Sbjct: 24542 gatgattgagccggagcttgcgtttgctgatctaaatgatgacatggcttgtgcaactgc 24483 Query: 1049 atatctccagtatgtagta 1067 ||||||||||| ||||||| Sbjct: 24482 atatctccagtttgtagta 24464 Score = 69.9 bits (35), Expect = 3e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||||||||||||| | || || ||||| |||||||| ||||| |||||||||||| Sbjct: 24705 acatttggtcccacatttcgagcagagaattctaacacttccaggcacttggctgaattt 24646 Query: 987 tgg 989 ||| Sbjct: 24645 tgg 24643 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Minus Query: 1410 ggtgaacttattggaggaagccagagagaagaacggcttga 1450 |||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 22738 ggtgaacttattggtggaagccaaagagaagaacgacttga 22698 Score = 50.1 bits (25), Expect = 0.028 Identities = 52/61 (85%) Strand = Plus / Minus Query: 1531 cagttcctcatgctggttttggccttggatttgaacggcttgtacagtttgcaaccggaa 1590 ||||||||||||| || ||||| | ||||||||| | ||||| ||||||||||| |||| Sbjct: 21744 cagttcctcatgcaggctttggtttaggatttgaaagacttgtccagtttgcaacaggaa 21685 Query: 1591 t 1591 | Sbjct: 21684 t 21684 Score = 50.1 bits (25), Expect = 0.028 Identities = 55/65 (84%) Strand = Plus / Minus Query: 1338 aaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatggacctattg 1397 ||||| || ||||||||||| || ||||| || ||||| |||||||| |||||| | ||| Sbjct: 23102 aaggcattttatatgcgacagaatgatgatggaaaaacagttgctgcgatggacatgttg 23043 Query: 1398 gttcc 1402 ||||| Sbjct: 23042 gttcc 23038 Score = 48.1 bits (24), Expect = 0.11 Identities = 48/56 (85%) Strand = Plus / Minus Query: 696 tgggtatcaagccctattattactgcctcagattgtgaaggagcgggggagcagtt 751 ||||| ||||| |||||||| || || ||||||||||| |||||||| || ||||| Sbjct: 25768 tgggtctcaagtcctattatcacagcttcagattgtgagggagcgggtgaacagtt 25713
>dbj|AP006400.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22I23, TM0281b, complete sequence Length = 48187 Score = 85.7 bits (43), Expect = 5e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||| || || ||||| |||||||||||||||||||||||||| ||||| | ||| Sbjct: 32335 gatgattgaaccagagcttgcatttgctgatctaaatgatgacatggcttgtgcgactgc 32394 Query: 1049 atatctccagtatgtagta 1067 |||||||||| ||||||| Sbjct: 32395 ctatctccagtttgtagta 32413 Score = 61.9 bits (31), Expect = 7e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 ||||||||||||||||| | || |||||||| ||||| || ||||| |||||||||||| Sbjct: 32116 acatttggtcccacattccgagccgaaaattccaacacctctaggcacttggctgaattt 32175 Query: 987 tgg 989 ||| Sbjct: 32176 tgg 32178 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Plus Query: 1330 aggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgg 1389 |||| |||||||| |||||||||||||| || ||||| || ||||| ||||| || |||| Sbjct: 34558 aggatattaaggcattctatatgcgacagaatgatgatggaaaaacagttgcagctatgg 34617 Query: 1390 acctattggttcc 1402 || | |||||||| Sbjct: 34618 acatgttggttcc 34630 Score = 58.0 bits (29), Expect = 1e-04 Identities = 38/41 (92%) Strand = Plus / Plus Query: 1410 ggtgaacttattggaggaagccagagagaagaacggcttga 1450 |||||||||||||| |||||||| ||||||||| ||||||| Sbjct: 34968 ggtgaacttattggcggaagccaaagagaagaaaggcttga 35008 Score = 52.0 bits (26), Expect = 0.007 Identities = 62/74 (83%) Strand = Plus / Plus Query: 678 caagacaatggatttatttgggtatcaagccctattattactgcctcagattgtgaagga 737 ||||| ||||| ||| | ||||| ||||| |||||||| || || ||||||||||| ||| Sbjct: 30554 caagaaaatgggtttgtatgggtctcaagtcctattataacagcttcagattgtgaggga 30613 Query: 738 gcgggggagcagtt 751 ||||| || ||||| Sbjct: 30614 gcgggtgaacagtt 30627
>ref|NM_105766.2| Arabidopsis thaliana SYNC1; ATP binding / asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / tRNA ligase (SYNC1) mRNA, complete cds Length = 1945 Score = 79.8 bits (40), Expect = 3e-11 Identities = 91/108 (84%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||||||||| ||| |||| || || || |||||||||||||||| ||||| || Sbjct: 982 acatttggtcccacttttcgggcagagaactctcacacttcaaggcatttagctgagttc 1041 Query: 987 tggatgattgagcctgaacttgcctttgctgatctaaatgatgacatg 1034 |||||| ||||||||||| |||| ||||| ||| || |||| |||||| Sbjct: 1042 tggatggttgagcctgaaattgcttttgcagatatacatgacgacatg 1089
>gb|AY050862.1| Arabidopsis thaliana unknown protein (At4g17310) mRNA, complete cds Length = 3215 Score = 79.8 bits (40), Expect = 3e-11 Identities = 127/156 (81%) Strand = Plus / Minus Query: 1235 ggtgaagtgggggttggatttgcaaagtgagcatgaaagatatatcacagaagtcgcatt 1294 ||||||||||||| ||||| |||| |||||||||||||| || || ||||||| || || Sbjct: 2602 ggtgaagtgggggctggatctgcagagtgagcatgaaaggtacataacagaagaggcttt 2543 Query: 1295 tggcgggcatcctgtaataattagagattatccaaaggaaattaaggctttctatatgcg 1354 ||| || | ||||| ||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct: 2542 tgggggtcgacctgtgataataagagactatccgaaggagatcaaagcattctatatgcg 2483 Query: 1355 acaaaacgatgacgggaaaacggttgctgcaatgga 1390 | |||||||| ||||| || || || |||||||| Sbjct: 2482 ggagaacgatgatgggaagacagtggcagcaatgga 2447
>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8 Length = 207674 Score = 79.8 bits (40), Expect = 3e-11 Identities = 127/156 (81%) Strand = Plus / Plus Query: 1235 ggtgaagtgggggttggatttgcaaagtgagcatgaaagatatatcacagaagtcgcatt 1294 ||||||||||||| ||||| |||| |||||||||||||| || || ||||||| || || Sbjct: 49011 ggtgaagtgggggctggatctgcagagtgagcatgaaaggtacataacagaagaggcttt 49070 Query: 1295 tggcgggcatcctgtaataattagagattatccaaaggaaattaaggctttctatatgcg 1354 ||| || | ||||| ||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct: 49071 tgggggtcgacctgtgataataagagactatccgaaggagatcaaagcattctatatgcg 49130 Query: 1355 acaaaacgatgacgggaaaacggttgctgcaatgga 1390 | |||||||| ||||| || || || |||||||| Sbjct: 49131 ggagaacgatgatgggaagacagtggcagcaatgga 49166 Score = 58.0 bits (29), Expect = 1e-04 Identities = 106/134 (79%) Strand = Plus / Plus Query: 630 gtggcaagagtaagaaatgctctggcatatgcaactcataannnnnnncaagacaatgga 689 ||||||||||| || ||| ||||||||||||| || || || ||||| | |||| Sbjct: 47571 gtggcaagagttaggaatactctggcatatgctacacacaagttctttcaagaaagtgga 47630 Query: 690 tttatttgggtatcaagccctattattactgcctcagattgtgaaggagcgggggagcag 749 ||| | ||||| ||||||| ||||| || || || |||||||||||||| || || ||| Sbjct: 47631 tttgtctgggtggcaagcccaattatcacagcttcggattgtgaaggagcaggagaacag 47690 Query: 750 ttctatgtcactac 763 |||| ||||||||| Sbjct: 47691 ttctgtgtcactac 47704 Score = 54.0 bits (27), Expect = 0.002 Identities = 66/79 (83%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||| || |||||||| ||||| || || ||||||||||||| ||||| | ||| Sbjct: 48313 gatgattgaaccagaacttgcttttgccgacctggatgatgacatggcctgtgccactgc 48372 Query: 1049 atatctccagtatgtagta 1067 || |||||||| |||||| Sbjct: 48373 ctacctccagtacgtagta 48391 Score = 52.0 bits (26), Expect = 0.007 Identities = 44/50 (88%) Strand = Plus / Plus Query: 924 tacacatttggtcccacatttagggctgaaaattcaaacacttcaaggca 973 |||||||||||||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 48156 tacacatttggtcctacatttcgagctgagaattccaacacgtcaaggca 48205
>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46 Length = 198788 Score = 79.8 bits (40), Expect = 3e-11 Identities = 127/156 (81%) Strand = Plus / Plus Query: 1235 ggtgaagtgggggttggatttgcaaagtgagcatgaaagatatatcacagaagtcgcatt 1294 ||||||||||||| ||||| |||| |||||||||||||| || || ||||||| || || Sbjct: 38376 ggtgaagtgggggctggatctgcagagtgagcatgaaaggtacataacagaagaggcttt 38435 Query: 1295 tggcgggcatcctgtaataattagagattatccaaaggaaattaaggctttctatatgcg 1354 ||| || | ||||| ||||| ||||| ||||| ||||| || || || ||||||||||| Sbjct: 38436 tgggggtcgacctgtgataataagagactatccgaaggagatcaaagcattctatatgcg 38495 Query: 1355 acaaaacgatgacgggaaaacggttgctgcaatgga 1390 | |||||||| ||||| || || || |||||||| Sbjct: 38496 ggagaacgatgatgggaagacagtggcagcaatgga 38531 Score = 58.0 bits (29), Expect = 1e-04 Identities = 106/134 (79%) Strand = Plus / Plus Query: 630 gtggcaagagtaagaaatgctctggcatatgcaactcataannnnnnncaagacaatgga 689 ||||||||||| || ||| ||||||||||||| || || || ||||| | |||| Sbjct: 36936 gtggcaagagttaggaatactctggcatatgctacacacaagttctttcaagaaagtgga 36995 Query: 690 tttatttgggtatcaagccctattattactgcctcagattgtgaaggagcgggggagcag 749 ||| | ||||| ||||||| ||||| || || || |||||||||||||| || || ||| Sbjct: 36996 tttgtctgggtggcaagcccaattatcacagcttcggattgtgaaggagcaggagaacag 37055 Query: 750 ttctatgtcactac 763 |||| ||||||||| Sbjct: 37056 ttctgtgtcactac 37069 Score = 54.0 bits (27), Expect = 0.002 Identities = 66/79 (83%) Strand = Plus / Plus Query: 989 gatgattgagcctgaacttgcctttgctgatctaaatgatgacatggcgtgtgcaagtgc 1048 ||||||||| || |||||||| ||||| || || ||||||||||||| ||||| | ||| Sbjct: 37678 gatgattgaaccagaacttgcttttgccgacctggatgatgacatggcctgtgccactgc 37737 Query: 1049 atatctccagtatgtagta 1067 || |||||||| |||||| Sbjct: 37738 ctacctccagtacgtagta 37756 Score = 52.0 bits (26), Expect = 0.007 Identities = 44/50 (88%) Strand = Plus / Plus Query: 924 tacacatttggtcccacatttagggctgaaaattcaaacacttcaaggca 973 |||||||||||||| |||||| | ||||| ||||| ||||| |||||||| Sbjct: 37521 tacacatttggtcctacatttcgagctgagaattccaacacgtcaaggca 37570
>gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence, complete sequence Length = 110514 Score = 73.8 bits (37), Expect = 2e-09 Identities = 76/89 (85%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||||||||| ||| |||| || || || |||||||||||||||| ||||| || Sbjct: 80920 acatttggtcccacttttcgggcagagaactctcacacttcaaggcatttagctgagttc 80979 Query: 987 tggatgattgagcctgaacttgcctttgc 1015 |||||| ||||||||||| |||| ||||| Sbjct: 80980 tggatggttgagcctgaaattgcttttgc 81008
>ref|XM_734327.1| Plasmodium chabaudi chabaudi asparagine--tRNA ligase (PC000062.04.0) partial mRNA Length = 1374 Score = 67.9 bits (34), Expect = 1e-07 Identities = 85/102 (83%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||| ||||| ||||| || |||| |||| | || ||||||||||| || || ||| Sbjct: 766 acatttgggcccacgtttagagcagaaagttcacatacatcaaggcatttagcagagttt 825 Query: 987 tggatgattgagcctgaacttgcctttgctgatctaaatgat 1028 ||||||||||| |||||| | || ||||||||| || ||||| Sbjct: 826 tggatgattgaacctgaaatggcatttgctgatatatatgat 867
>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence Length = 92099 Score = 65.9 bits (33), Expect = 5e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||| || |||||| | || || ||||| ||||||| |||||||||||||||||| Sbjct: 17459 acatttggcccgacatttcgtgcagagaattctcacacttccaggcatttggctgaattt 17518 Query: 987 tggatgattgagcctgaacttgcctttgc 1015 |||||| | || |||||| |||| ||||| Sbjct: 17519 tggatggtagaacctgaaattgcgtttgc 17547
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence Length = 110895 Score = 65.9 bits (33), Expect = 5e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||| || |||||| | || || ||||| ||||||| |||||||||||||||||| Sbjct: 59560 acatttggcccaacatttcgtgcagagaattctcacacttccaggcatttggctgaattt 59501 Query: 987 tggatgattgagcctgaacttgcctttgc 1015 |||||| | || |||||| |||| ||||| Sbjct: 59500 tggatggtagaacctgaaattgcgtttgc 59472
>ref|XM_625497.1| Cryptosporidium parvum Iowa II asparaginyl-tRNA synthetase (NOB+tRNA synthase) (cgd8_350), partial mRNA Length = 1500 Score = 63.9 bits (32), Expect = 2e-06 Identities = 98/120 (81%) Strand = Plus / Plus Query: 915 tctgatatttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcat 974 |||||| |||| |||||||| || || || || || |||||||| |||| |||| ||| Sbjct: 769 tctgatgtttatacatttggaccaactttcagagcggaaaattctcacacaacaagacat 828 Query: 975 ttggctgaattttggatgattgagcctgaacttgcctttgctgatctaaatgatgacatg 1034 | ||||||||||||||||| ||||||||| | || ||||||||||| | |||| ||||| Sbjct: 829 cttgctgaattttggatgatcgagcctgaaatggcatttgctgatcttagtgataacatg 888
>ref|XM_662068.1| Cryptosporidium hominis TU502 asparaginyl-tRNA synthetase (Chro.80047) partial mRNA Length = 1500 Score = 63.9 bits (32), Expect = 2e-06 Identities = 98/120 (81%) Strand = Plus / Plus Query: 915 tctgatatttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcat 974 |||||| |||| |||||||| || || || || || |||||||| |||| |||| ||| Sbjct: 769 tctgatgtttatacatttggaccaactttcagagcggaaaattctcacacaacaagacat 828 Query: 975 ttggctgaattttggatgattgagcctgaacttgcctttgctgatctaaatgatgacatg 1034 | ||||||||||||||||| ||||||||| | || ||||||||||| | |||| ||||| Sbjct: 829 cttgctgaattttggatgatcgagcctgaaatggcatttgctgatcttagtgataacatg 888
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 63.9 bits (32), Expect = 2e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 |||| ||||||||||| |||||| |||| |||||||| || ||||| | ||||| || | Sbjct: 470930 tttatacatttggtccaacatttcgggcagaaaattccaatacttcccgtcatttagcag 470989 Query: 982 aattttggatgattga 997 |||||||||||||||| Sbjct: 470990 aattttggatgattga 471005
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 61.9 bits (31), Expect = 7e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 |||| ||||||||||| || ||||| |||||||||||||| ||| ||| ||| |||| Sbjct: 951723 tttatacatttggtcctacttttagagctgaaaattcaaatactgcaaaacatgctgctg 951782 Query: 982 aattttggatgattgagcctgaacttgcctttgctgatctaaa 1024 | ||||| |||||||| || ||| |||| ||||||||| |||| Sbjct: 951783 agttttgaatgattgaaccagaagttgcttttgctgatttaaa 951825
>emb|Z33372.1|MCABJ M.capricolum DNA for CONTIG MCABJ Length = 353 Score = 61.9 bits (31), Expect = 7e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 |||| ||||||||||| || ||||| |||||||||||||| ||| ||| ||| |||| Sbjct: 182 tttatacatttggtcctacttttagagctgaaaattcaaatactgcaaaacatgctgctg 123 Query: 982 aattttggatgattgagcctgaacttgcctttgctgatctaaa 1024 | ||||| |||||||| || ||| |||| ||||||||| |||| Sbjct: 122 agttttgaatgattgaaccagaagttgcttttgctgatttaaa 80
>ref|XM_672186.1| Plasmodium berghei strain ANKA asparagine--tRNA ligase, (PB000584.03.0) partial mRNA Length = 1725 Score = 61.9 bits (31), Expect = 7e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 930 tttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattttgg 989 ||||| || |||||||| || ||||||||| | || || || ||||| |||||||||||| Sbjct: 1009 tttggaccaacatttagagcagaaaattcacatacatctagacatttagctgaattttgg 1068 Query: 990 atgattgagcctgaacttgcctttgctgatctaaatgat 1028 |||||||| || ||| | || ||||||||| || ||||| Sbjct: 1069 atgattgaaccagaaatggcatttgctgatatatatgat 1107
>gb|CP000416.1| Lactobacillus brevis ATCC 367, complete genome Length = 2291220 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 1320 gattatccaaaggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggtt 1379 |||||||| |||||||||||||| || ||||||||| | || || |||||||| |||||| Sbjct: 1971764 gattatcctaaggaaattaaggccttttatatgcgagacaatgaagacgggaagacggtt 1971705 Query: 1380 gc 1381 || Sbjct: 1971704 gc 1971703
>gb|CP000393.1| Trichodesmium erythraeum IMS101, complete genome Length = 7750108 Score = 60.0 bits (30), Expect = 3e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 930 tttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattttgg 989 |||||||| || ||||| || |||||||| || ||||| ||||||| ||||| |||||| Sbjct: 3493820 tttggtccgacttttagagcagaaaattctaatacttctcggcatttagctgagttttgg 3493879 Query: 990 atgattgagcctga 1003 |||||||| ||||| Sbjct: 3493880 atgattgaacctga 3493893
>ref|NM_125051.2| Arabidopsis thaliana EMB2755; ATP binding / asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding / tRNA ligase (EMB2755) mRNA, complete cds Length = 1976 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 961 acacttcaaggcatttggctgaattttggatgattgagcctgaacttgcctttgctgatc 1020 |||||||||||||| | |||||||| |||||| |||||||||| |||| ||||| |||| Sbjct: 1127 acacttcaaggcatcttgctgaattctggatggttgagcctgagattgcttttgcagatc 1186 Query: 1021 ta 1022 || Sbjct: 1187 ta 1188
>gb|AY062109.1| Arabidopsis thaliana AT5g56680/MIK19_13 mRNA sequence Length = 1966 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 961 acacttcaaggcatttggctgaattttggatgattgagcctgaacttgcctttgctgatc 1020 |||||||||||||| | |||||||| |||||| |||||||||| |||| ||||| |||| Sbjct: 1128 acacttcaaggcatcttgctgaattctggatggttgagcctgagattgcttttgcagatc 1187 Query: 1021 ta 1022 || Sbjct: 1188 ta 1189
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19 Length = 84129 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 961 acacttcaaggcatttggctgaattttggatgattgagcctgaacttgcctttgctgatc 1020 |||||||||||||| | |||||||| |||||| |||||||||| |||| ||||| |||| Sbjct: 35973 acacttcaaggcatcttgctgaattctggatggttgagcctgagattgcttttgcagatc 36032 Query: 1021 ta 1022 || Sbjct: 36033 ta 36034
>gb|AF170909.1|AF170909 Arabidopsis thaliana SYNC1 protein mRNA, complete cds Length = 1719 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 961 acacttcaaggcatttggctgaattttggatgattgagcctgaacttgcctttgctgatc 1020 |||||||||||||| | |||||||| |||||| |||||||||| |||| ||||| |||| Sbjct: 1025 acacttcaaggcatcttgctgaattctggatggttgagcctgagattgcttttgcagatc 1084 Query: 1021 ta 1022 || Sbjct: 1085 ta 1086
>emb|BX830737.1|CNS0A1M7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS19ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1860 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 961 acacttcaaggcatttggctgaattttggatgattgagcctgaacttgcctttgctgatc 1020 |||||||||||||| | |||||||| |||||| |||||||||| |||| ||||| |||| Sbjct: 1070 acacttcaaggcatcttgctgaattctggatggttgagcctgagattgcttttgcagatc 1129 Query: 1021 ta 1022 || Sbjct: 1130 ta 1131
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 58.0 bits (29), Expect = 1e-04 Identities = 89/109 (81%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 ||||||||||| |||||||| |||||||| |||||||| || |||| ||||| || Sbjct: 2863603 acatttggtcctacatttagagctgaaaactcaaacacagtaaagcatgctgctgagttc 2863662 Query: 987 tggatgattgagcctgaacttgcctttgctgatctaaatgatgacatgg 1035 |||||||| || |||||| | || ||||||||| ||| |||||||||| Sbjct: 2863663 tggatgatagaacctgaaatggcttttgctgatttaatagatgacatgg 2863711 Score = 42.1 bits (21), Expect = 6.9 Identities = 57/69 (82%) Strand = Plus / Plus Query: 1323 tatccaaaggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggttgct 1382 ||||||||||| ||||| || ||||| ||| || ||| || ||||| ||||| |||||| Sbjct: 2863996 tatccaaaggatattaaagcgttctacatgagattaaatgaagacggaaaaacagttgct 2864055 Query: 1383 gcaatggac 1391 || |||||| Sbjct: 2864056 gctatggac 2864064
>gb|CP000388.1| Pseudoalteromonas atlantica T6c, complete genome Length = 5187005 Score = 56.0 bits (28), Expect = 5e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 978 gctgaattttggatgattgagcctgaacttgcctttgctgatct 1021 ||||||||||||||||||||||||||| | || ||||| ||||| Sbjct: 2274587 gctgaattttggatgattgagcctgaagtggcgtttgccgatct 2274544
>emb|CU207366.1| Gramella forsetii KT0803 complete genome Length = 3798465 Score = 54.0 bits (27), Expect = 0.002 Identities = 51/59 (86%) Strand = Plus / Minus Query: 942 tttagggctgaaaattcaaacacttcaaggcatttggctgaattttggatgattgagcc 1000 ||||| ||||||||||||||||||||| | || |||| ||||| |||||||| ||||| Sbjct: 123679 tttagagctgaaaattcaaacacttcacgtcacctggcagaattctggatgatcgagcc 123621
>gb|AY198133.1| Spiroplasma kunkelii strain CR2-3x partial genome sequence Length = 84712 Score = 54.0 bits (27), Expect = 0.002 Identities = 63/75 (84%) Strand = Plus / Plus Query: 930 tttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattttgg 989 |||||||| |||||| | ||||||||||| || || |||| ||| ||||||||||| Sbjct: 52629 tttggtccaacatttcgtgctgaaaattctaatacaacaagacatgctgctgaattttga 52688 Query: 990 atgattgagcctgaa 1004 ||||||||||||||| Sbjct: 52689 atgattgagcctgaa 52703
>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome Length = 615980 Score = 54.0 bits (27), Expect = 0.002 Identities = 54/63 (85%) Strand = Plus / Minus Query: 930 tttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattttgg 989 |||||||| | |||||| ||||||||||| || ||| ||| |||||| ||||||||||| Sbjct: 380160 tttggtcctatatttagagctgaaaattcgaatactagaagacatttgtctgaattttgg 380101 Query: 990 atg 992 ||| Sbjct: 380100 atg 380098
>emb|BX842642.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4 Length = 347558 Score = 54.0 bits (27), Expect = 0.002 Identities = 84/103 (81%) Strand = Plus / Minus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 |||| ||||||||||| || ||||| |||||||| ||||| ||| ||| ||| |||| Sbjct: 99049 tttatacatttggtcctacttttagagctgaaaactcaaatactgcaaaacatgctgctg 98990 Query: 982 aattttggatgattgagcctgaacttgcctttgctgatctaaa 1024 | ||||| |||||||| || ||| |||| ||||||||| |||| Sbjct: 98989 agttttgaatgattgaaccagaagttgcttttgctgatttaaa 98947
>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome Length = 697724 Score = 54.0 bits (27), Expect = 0.002 Identities = 60/71 (84%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||| || || ||||| |||||||||||||| ||| |||||||| || |||||| Sbjct: 306371 acatttggaccaacttttagagctgaaaattcaaatactagcaggcatttagcagaattt 306430 Query: 987 tggatgattga 997 |||||| |||| Sbjct: 306431 tggatggttga 306441
>gb|CP000246.1| Clostridium perfringens ATCC 13124, complete genome Length = 3256683 Score = 52.0 bits (26), Expect = 0.007 Identities = 35/38 (92%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacac 964 ||||||||||| |||||||| |||||||| |||||||| Sbjct: 3086222 acatttggtcctacatttagagctgaaaactcaaacac 3086259 Score = 48.1 bits (24), Expect = 0.11 Identities = 60/72 (83%) Strand = Plus / Plus Query: 1320 gattatccaaaggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggtt 1379 |||||||||||||| ||||| || ||||| ||| || ||| || ||||| ||||| ||| Sbjct: 3086612 gattatccaaaggatattaaagcattctacatgagattaaatgaagacggaaaaacagtt 3086671 Query: 1380 gctgcaatggac 1391 ||||| |||||| Sbjct: 3086672 gctgctatggac 3086683
>ref|XM_725294.1| Plasmodium yoelii yoelii str. 17XNL asparaginyl-tRNA synthetase (PY02504) partial mRNA Length = 1761 Score = 52.0 bits (26), Expect = 0.007 Identities = 83/102 (81%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||| || |||||||| || |||||||| | || || || ||| | ||||||||| Sbjct: 967 acatttggaccaacatttagagcagaaaattctcatacatctagacatctagctgaattt 1026 Query: 987 tggatgattgagcctgaacttgcctttgctgatctaaatgat 1028 |||||||| || |||||| | || ||||||||| || ||||| Sbjct: 1027 tggatgatagaacctgaaatggcatttgctgatatatatgat 1068
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 52.0 bits (26), Expect = 0.007 Identities = 56/66 (84%) Strand = Plus / Minus Query: 939 acatttagggctgaaaattcaaacacttcaaggcatttggctgaattttggatgattgag 998 |||||||| || ||| | ||||||||| |||| ||| ||||||||||||||||| ||| Sbjct: 3410753 acatttagagcagaagaatcaaacactacaagacatgcagctgaattttggatgatagag 3410694 Query: 999 cctgaa 1004 |||||| Sbjct: 3410693 cctgaa 3410688
>ref|XM_721032.1| Plasmodium yoelii yoelii str. 17XNL asparaginyl-tRNA synthetase (PY05639) partial mRNA Length = 1731 Score = 52.0 bits (26), Expect = 0.007 Identities = 83/102 (81%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattt 986 |||||||| || |||||||| || |||||||| | || || || ||| | ||||||||| Sbjct: 1012 acatttggaccaacatttagagcagaaaattctcatacatctagacatctagctgaattt 1071 Query: 987 tggatgattgagcctgaacttgcctttgctgatctaaatgat 1028 |||||||| || |||||| | || ||||||||| || ||||| Sbjct: 1072 tggatgatagaacctgaaatggcatttgctgatatatatgat 1113
>gb|CP000414.1| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293, complete genome Length = 2038396 Score = 50.1 bits (25), Expect = 0.028 Identities = 31/33 (93%) Strand = Plus / Minus Query: 972 catttggctgaattttggatgattgagcctgaa 1004 |||||| |||| ||||||||||||||||||||| Sbjct: 1365947 catttgactgagttttggatgattgagcctgaa 1365915
>emb|AM285304.1| Spiroplasma citri GII3-3X chromosome, contig Contig03 Length = 290001 Score = 50.1 bits (25), Expect = 0.028 Identities = 40/45 (88%) Strand = Plus / Plus Query: 978 gctgaattttggatgattgagcctgaacttgcctttgctgatcta 1022 ||||||||||| ||||||||||||||| |||| ||| ||||||| Sbjct: 116086 gctgaattttgaatgattgagcctgaaattgcttttattgatcta 116130 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1249 tggatttgcaaagtgagcatgaaagatat 1277 ||||||| |||| |||||||||||||||| Sbjct: 116369 tggatttacaaactgagcatgaaagatat 116397
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 50.1 bits (25), Expect = 0.028 Identities = 31/33 (93%) Strand = Plus / Minus Query: 1320 gattatccaaaggaaattaaggctttctatatg 1352 ||||||||||| || |||||||||||||||||| Sbjct: 679643 gattatccaaaagatattaaggctttctatatg 679611
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 50.1 bits (25), Expect = 0.028 Identities = 70/85 (82%) Strand = Plus / Plus Query: 1496 ctactggtggtatttggatctgcggcgatatggatcagttcctcatgctggttttggcct 1555 ||||||||||||||||||| |||| || ||||| || || |||||||| ||||| || Sbjct: 2587943 ctactggtggtatttggatttgcgccgttatggcagtgtcccccatgctggctttggtct 2588002 Query: 1556 tggatttgaacggcttgtacagttt 1580 |||||||| ||||| || |||||| Sbjct: 2588003 aggatttgagcggctggtgcagttt 2588027
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 50.1 bits (25), Expect = 0.028 Identities = 31/33 (93%) Strand = Plus / Minus Query: 972 catttggctgaattttggatgattgagcctgaa 1004 ||||||||||||||||||||| |||| |||||| Sbjct: 1155684 catttggctgaattttggatggttgaacctgaa 1155652
>gb|CP000312.1| Clostridium perfringens SM101, complete genome Length = 2897393 Score = 48.1 bits (24), Expect = 0.11 Identities = 60/72 (83%) Strand = Plus / Plus Query: 1320 gattatccaaaggaaattaaggctttctatatgcgacaaaacgatgacgggaaaacggtt 1379 |||||||||||||| ||||| || ||||| ||| || ||| || ||||| ||||| ||| Sbjct: 2728075 gattatccaaaggatattaaagcattctacatgagattaaatgaagacggaaaaacagtt 2728134 Query: 1380 gctgcaatggac 1391 ||||| |||||| Sbjct: 2728135 gctgctatggac 2728146 Score = 46.1 bits (23), Expect = 0.44 Identities = 32/35 (91%) Strand = Plus / Plus Query: 927 acatttggtcccacatttagggctgaaaattcaaa 961 ||||||||||| |||||||| |||||||| ||||| Sbjct: 2727685 acatttggtcctacatttagagctgaaaactcaaa 2727719
>gb|AE001400.1| Plasmodium falciparum 3D7 chromosome 2 section 37 of 73 of the complete sequence Length = 12029 Score = 48.1 bits (24), Expect = 0.11 Identities = 48/56 (85%) Strand = Plus / Plus Query: 939 acatttagggctgaaaattcaaacacttcaaggcatttggctgaattttggatgat 994 |||||||| ||||||||||| | ||||| || ||| | ||||||||||||||||| Sbjct: 9081 acatttagagctgaaaattctcatacttctagacatctagctgaattttggatgat 9136
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 48.1 bits (24), Expect = 0.11 Identities = 54/64 (84%) Strand = Plus / Minus Query: 1335 attaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatggaccta 1394 ||||| || ||||||||||| |||||| ||||| ||||| ||||| ||||||||| || Sbjct: 1028278 attaaagccttctatatgcggttaaacgaagacggcaaaaccgttgcggcaatggacgta 1028219 Query: 1395 ttgg 1398 |||| Sbjct: 1028218 ttgg 1028215
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 48.1 bits (24), Expect = 0.11 Identities = 30/32 (93%) Strand = Plus / Minus Query: 1359 aacgatgacgggaaaacggttgctgcaatgga 1390 ||||||||||| |||||||||||||| ||||| Sbjct: 2693966 aacgatgacggtaaaacggttgctgctatgga 2693935 Score = 44.1 bits (22), Expect = 1.7 Identities = 37/42 (88%) Strand = Plus / Minus Query: 978 gctgaattttggatgattgagcctgaacttgcctttgctgat 1019 ||||||||||||||| | || |||||| |||| ||||||||| Sbjct: 2694344 gctgaattttggatggtcgaacctgaaattgcttttgctgat 2694303
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 46.1 bits (23), Expect = 0.44 Identities = 41/47 (87%) Strand = Plus / Plus Query: 690 tttatttgggtatcaagccctattattactgcctcagattgtgaagg 736 |||||||||||||||| ||| |||| || ||||| ||||||||||| Sbjct: 2320738 tttatttgggtatcaaccccacttatcacagcctctgattgtgaagg 2320784 Score = 42.1 bits (21), Expect = 6.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1358 aaacgatgacgggaaaacggttgctgcaatggacctattgg 1398 |||||||||||| ||||| ||||| || |||||| |||||| Sbjct: 2321379 aaacgatgacggtaaaaccgttgccgccatggacgtattgg 2321419
>gb|BT018795.1| Zea mays clone EL01N0528A03.d mRNA sequence Length = 1941 Score = 46.1 bits (23), Expect = 0.44 Identities = 29/31 (93%) Strand = Plus / Minus Query: 1578 tttgcaaccggaatagacaacatcagagatg 1608 |||||||||||||| || ||||||||||||| Sbjct: 253 tttgcaaccggaatggagaacatcagagatg 223
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Plus Query: 163 ccgcgccccccgtcgcggccacg 185 ||||||||||||||||||||||| Sbjct: 245039 ccgcgccccccgtcgcggccacg 245061
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Plus Query: 163 ccgcgccccccgtcgcggccacg 185 ||||||||||||||||||||||| Sbjct: 182752 ccgcgccccccgtcgcggccacg 182774
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 46.1 bits (23), Expect = 0.44 Identities = 23/23 (100%) Strand = Plus / Minus Query: 163 ccgcgccccccgtcgcggccacg 185 ||||||||||||||||||||||| Sbjct: 171763 ccgcgccccccgtcgcggccacg 171741
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 46.1 bits (23), Expect = 0.44 Identities = 59/71 (83%) Strand = Plus / Minus Query: 922 tttacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctg 981 ||||||| ||||||||||| ||| |||| |||||||| || || || |||| |||| | Sbjct: 3223200 tttacacttttggtcccacttttcgggcggaaaattccaatacgtcccggcacctggcgg 3223141 Query: 982 aattttggatg 992 ||||||||||| Sbjct: 3223140 aattttggatg 3223130
>gb|L47709.1|BACYPIA Bacillus subtilis clone YAC15-6B ypiABF genes, qcrABC genes, ypjABCDEFGHI genes, birA gene, panBCD genes, dinG gene, ypmB gene, aspB gene, asnS gene, dnaD gene, nth gene and ypoC gene, complete cds Length = 23775 Score = 46.1 bits (23), Expect = 0.44 Identities = 35/39 (89%) Strand = Plus / Plus Query: 1523 atatggatcagttcctcatgctggttttggccttggatt 1561 ||||||||||||||||||| | || || ||||||||||| Sbjct: 21615 atatggatcagttcctcattccggcttcggccttggatt 21653
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 46.1 bits (23), Expect = 0.44 Identities = 53/63 (84%) Strand = Plus / Minus Query: 930 tttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaattttgg 989 |||||||| || ||||| |||||||| ||||| ||| |||| ||| |||||||||||| Sbjct: 858800 tttggtcctacttttagagctgaaaaatcaaatactccaagacatgctgctgaattttgg 858741 Query: 990 atg 992 ||| Sbjct: 858740 atg 858738
>gb|AY105512.1| Zea mays PCO123869 mRNA sequence Length = 2025 Score = 46.1 bits (23), Expect = 0.44 Identities = 29/31 (93%) Strand = Plus / Plus Query: 1578 tttgcaaccggaatagacaacatcagagatg 1608 |||||||||||||| || ||||||||||||| Sbjct: 1748 tttgcaaccggaatggagaacatcagagatg 1778
>emb|Z99115.2|BSUB0012 Bacillus subtilis complete genome (section 12 of 21): from 2207806 to 2409180 Length = 201375 Score = 46.1 bits (23), Expect = 0.44 Identities = 35/39 (89%) Strand = Plus / Minus Query: 1523 atatggatcagttcctcatgctggttttggccttggatt 1561 ||||||||||||||||||| | || || ||||||||||| Sbjct: 137742 atatggatcagttcctcattccggcttcggccttggatt 137704
>gb|U11289.1|BSU11289 Bacillus subtilis 168 asparaginyl-tRNA synthetase (asnS) and endonuclease III (jooB) genes, partial cds and DnaD protein (dnaD) and (jooC) genes, complete cds Length = 2220 Score = 46.1 bits (23), Expect = 0.44 Identities = 35/39 (89%) Strand = Plus / Plus Query: 1523 atatggatcagttcctcatgctggttttggccttggatt 1561 ||||||||||||||||||| | || || ||||||||||| Sbjct: 110 atatggatcagttcctcattccggcttcggccttggatt 148
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 46.1 bits (23), Expect = 0.44 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1496 ctactggtggtatttggatctgcggcg 1522 |||||||||||| |||||||||||||| Sbjct: 825177 ctactggtggtacttggatctgcggcg 825203
>ref|NM_105513.1| Arabidopsis thaliana unknown protein (AT1G68420) mRNA, complete cds Length = 264 Score = 44.1 bits (22), Expect = 1.7 Identities = 34/38 (89%) Strand = Plus / Plus Query: 961 acacttcaaggcatttggctgaattttggatgattgag 998 |||||||||||||| | ||||| ||||||||| ||||| Sbjct: 50 acacttcaaggcatcttgctgagttttggatggttgag 87
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcg 179 |||||||||||||||||||||| Sbjct: 1020887 cgccgccgcgccccccgtcgcg 1020908
>gb|AE006413.1| Lactococcus lactis subsp. lactis IL1403 section 175 of 218 of the complete genome Length = 10647 Score = 44.1 bits (22), Expect = 1.7 Identities = 34/38 (89%) Strand = Plus / Minus Query: 1530 tcagttcctcatgctggttttggccttggatttgaacg 1567 |||||||||||||||||||| || ||||| ||||||| Sbjct: 834 tcagttcctcatgctggtttcggacttggtcttgaacg 797
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 1.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 163 ccgcgccccccgtcgcggccacggcg 188 |||||||||||| ||||||||||||| Sbjct: 4327245 ccgcgccccccgccgcggccacggcg 4327220
>emb|AL032635.1| Caenorhabditis elegans YAC Y51A2A, complete sequence Length = 36303 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1697 gatttgaagaagaccttacgtt 1718 |||||||||||||||||||||| Sbjct: 715 gatttgaagaagaccttacgtt 736
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcg 179 |||||||||||||||||||||| Sbjct: 2338413 cgccgccgcgccccccgtcgcg 2338434
>emb|AL603744.3| Zebrafish DNA sequence from clone BUSM1-79M10 Contains two novel genes and two transposase/reverse transcriptase pseudogenes, complete sequence Length = 72590 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1319 agattatccaaaggaaattaag 1340 |||||||||||||||||||||| Sbjct: 48352 agattatccaaaggaaattaag 48331
>gb|AC015986.4|AC015986 Arabidopsis thaliana chromosome 1 BAC T2E12 genomic sequence, complete sequence Length = 35229 Score = 44.1 bits (22), Expect = 1.7 Identities = 34/38 (89%) Strand = Plus / Minus Query: 961 acacttcaaggcatttggctgaattttggatgattgag 998 |||||||||||||| | ||||| ||||||||| ||||| Sbjct: 13176 acacttcaaggcatcttgctgagttttggatggttgag 13139
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 44.1 bits (22), Expect = 1.7 Identities = 31/34 (91%) Strand = Plus / Minus Query: 1531 cagttcctcatgctggttttggccttggatttga 1564 ||||||||||||||||||| || ||||| ||||| Sbjct: 1288160 cagttcctcatgctggtttcggtcttggctttga 1288127
>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10, complete sequence Length = 188280 Score = 44.1 bits (22), Expect = 1.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1319 agattatccaaaggaaattaag 1340 |||||||||||||||||||||| Sbjct: 146240 agattatccaaaggaaattaag 146219
>gb|CP000382.1| Clostridium novyi NT, complete genome Length = 2547720 Score = 42.1 bits (21), Expect = 6.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1419 attggaggaagccagagagaagaacggcttgat 1451 |||||||||||||| ||||||||| | |||||| Sbjct: 343724 attggaggaagccaaagagaagaaagacttgat 343756
>emb|AM238664.1| Streptomyces ambofaciens ATCC 23877 right chromosomal arm Length = 1367119 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 cggccacggcgatgccgacgg 198 ||||||||||||||||||||| Sbjct: 248273 cggccacggcgatgccgacgg 248293
>gb|CP000425.1| Lactococcus lactis subsp. cremoris SK11, complete genome Length = 2438589 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1530 tcagttcctcatgctggttttggccttgg 1558 |||||||||||||||||||| || ||||| Sbjct: 1913744 tcagttcctcatgctggtttcggacttgg 1913716
>dbj|AK243506.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100074O19, full insert sequence Length = 2304 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 157 cgccgccgcgccccccgccgcggcc 181
>ref|NM_001069004.1| Oryza sativa (japonica cultivar-group) Os08g0555200 (Os08g0555200) mRNA, complete cds Length = 1773 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 72 cgccgccgcgccccccgccgcggcc 96
>ref|NM_001069002.1| Oryza sativa (japonica cultivar-group) Os08g0554900 (Os08g0554900) mRNA, complete cds Length = 2304 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 129 cgccgccgcgccccccgccgcggcc 153
>emb|AL590842.1| Yersinia pestis CO92 complete genome Length = 4653728 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 972 catttggctgaattttggatgattgagcc 1000 |||||||||||||| |||||| ||||||| Sbjct: 1601199 catttggctgaattctggatggttgagcc 1601171
>gb|CP000447.1| Shewanella frigidimarina NCIMB 400, complete genome Length = 4845257 Score = 42.1 bits (21), Expect = 6.9 Identities = 48/57 (84%) Strand = Plus / Plus Query: 1335 attaaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatggac 1391 ||||| |||||||||||||| ||||||||| || || || ||||| ||||||||| Sbjct: 2591893 attaaagctttctatatgcgcttaaacgatgatggcaagactgttgccgcaatggac 2591949
>gb|AE017042.1| Yersinia pestis biovar Microtus str. 91001, complete genome Length = 4595065 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 972 catttggctgaattttggatgattgagcc 1000 |||||||||||||| |||||| ||||||| Sbjct: 1274859 catttggctgaattctggatggttgagcc 1274887
>gb|CP000308.1| Yersinia pestis Antiqua, complete genome Length = 4702289 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 972 catttggctgaattttggatgattgagcc 1000 |||||||||||||| |||||| ||||||| Sbjct: 813017 catttggctgaattctggatggttgagcc 812989
>gb|CP000305.1| Yersinia pestis Nepal516, complete genome Length = 4534590 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 972 catttggctgaattttggatgattgagcc 1000 |||||||||||||| |||||| ||||||| Sbjct: 2882551 catttggctgaattctggatggttgagcc 2882579
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 972 catttggctgaattttggatgattgagcc 1000 |||||||||||||| |||||| ||||||| Sbjct: 3046531 catttggctgaattctggatggttgagcc 3046559
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 980 tgaattttggatgattgagcctgaa 1004 |||||||||||||||||| |||||| Sbjct: 740953 tgaattttggatgattgaacctgaa 740977
>gb|AC148393.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0044A08 map near S6115, complete sequence Length = 158583 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 38 cgccatggccgccgctgcctcctgc 62 ||||||||||||||| ||||||||| Sbjct: 39054 cgccatggccgccgccgcctcctgc 39078
>gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062O09 map near S6115, complete sequence Length = 148654 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 38 cgccatggccgccgctgcctcctgc 62 ||||||||||||||| ||||||||| Sbjct: 132757 cgccatggccgccgccgcctcctgc 132781
>gb|AC140721.15| Medicago truncatula clone mth2-16c16, complete sequence Length = 128119 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1131 atcatagatagactaaataatgtag 1155 ||||||||||||| ||||||||||| Sbjct: 68867 atcatagatagacaaaataatgtag 68891
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 6.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 913 tttctgatatttacacatttggtcccacatttagggctgaaaattcaaacact 965 |||| ||||||||||| || || || || || |||||||||||||| |||||| Sbjct: 1262300 tttccgatatttacaccttcgggcctaccttcagggctgaaaattccaacact 1262352
>gb|AE006100.1| Pasteurella multocida subsp. multocida str. Pm70 section 67 of 204 of the complete genome Length = 13317 Score = 42.1 bits (21), Expect = 6.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 1338 aaggctttctatatgcgacaaaacgatgacgggaaaacggttgctgcaatgga 1390 ||||||||||||||||| ||| |||||||| ||||| || || |||||||| Sbjct: 9630 aaggctttctatatgcgcttaaatgatgacggaaaaactgtcgcagcaatgga 9682
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 42.1 bits (21), Expect = 6.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 981 gaattttggatgattgagcctgaacttgcctttgctgatct 1021 |||||||||||||||||||| ||| | ||||| || ||||| Sbjct: 2446314 gaattttggatgattgagccagaaatcgccttcgcggatct 2446354
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 33 accttcgccatggccgccgctgcct 57 |||||||||||||||||||| |||| Sbjct: 2680277 accttcgccatggccgccgccgcct 2680301
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 38 cgccatggccgccgctgcctcctgc 62 ||||||||||||||| ||||||||| Sbjct: 12507078 cgccatggccgccgccgcctcctgc 12507054
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 gccgccgctgcctcctgccgc 65 ||||||||||||||||||||| Sbjct: 16329941 gccgccgctgcctcctgccgc 16329921 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 27754825 cgccgccgcgccccccgccgcggcc 27754849 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 27783119 cgccgccgcgccccccgccgcggcc 27783143
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 cacggcgatgccgacggggga 202 ||||||||||||||||||||| Sbjct: 27758880 cacggcgatgccgacggggga 27758860
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome Length = 2839318 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1355 acaaaacgatgacgggaaaac 1375 ||||||||||||||||||||| Sbjct: 1873490 acaaaacgatgacgggaaaac 1873510
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 6.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 972 catttggctgaattttggatgattgagcctgaa 1004 |||||||||||||| |||||||| || |||||| Sbjct: 2571889 catttggctgaattctggatgatcgaacctgaa 2571921
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 6.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 972 catttggctgaattttggatgattgagcc 1000 |||||||||||||| |||||| ||||||| Sbjct: 1724171 catttggctgaattctggatggttgagcc 1724143
>emb|BX255885.5| Zebrafish DNA sequence from clone CH211-213M12 in linkage group 4, complete sequence Length = 134701 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1735 tttacctgactgatttcactg 1755 ||||||||||||||||||||| Sbjct: 91377 tttacctgactgatttcactg 91357
>gb|AC154825.2| Mus musculus BAC clone RP24-540E16 from chromosome 16, complete sequence Length = 202988 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1314 attagagattatccaaaggaa 1334 ||||||||||||||||||||| Sbjct: 170440 attagagattatccaaaggaa 170420
>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0439B07 Length = 89475 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 9282 cgccgccgcgccccccgccgcggcc 9306 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 37576 cgccgccgcgccccccgccgcggcc 37600
>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1125_C01 Length = 123849 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 87747 cgccgccgcgccccccgccgcggcc 87771 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 116041 cgccgccgcgccccccgccgcggcc 116065
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0663F07 Length = 159046 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 cacggcgatgccgacggggga 202 ||||||||||||||||||||| Sbjct: 44213 cacggcgatgccgacggggga 44193
>dbj|AP005520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0426E02 Length = 166985 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 gccgccgctgcctcctgccgc 65 ||||||||||||||||||||| Sbjct: 35793 gccgccgctgcctcctgccgc 35773
>gb|AC040169.7| Homo sapiens chromosome 16 clone RP11-505K9, complete sequence Length = 212596 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 tgaagtgaagggaggggagga 259 ||||||||||||||||||||| Sbjct: 71198 tgaagtgaagggaggggagga 71178
>dbj|AK099230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094O15, full insert sequence Length = 2211 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 132 cgccgccgcgccccccgccgcggcc 156
>dbj|AK072840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141D24, full insert sequence Length = 2306 Score = 42.1 bits (21), Expect = 6.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 cgccgccgcgccccccgtcgcggcc 182 ||||||||||||||||| ||||||| Sbjct: 129 cgccgccgcgccccccgccgcggcc 153
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 42.1 bits (21), Expect = 6.9 Identities = 57/69 (82%) Strand = Plus / Minus Query: 924 tacacatttggtcccacatttagggctgaaaattcaaacacttcaaggcatttggctgaa 983 ||||| |||||||| || ||||| ||||||| ||||| ||| |||| ||| |||||| Sbjct: 704910 tacacttttggtcctacttttagatctgaaaaatcaaatactacaagacatgccgctgaa 704851 Query: 984 ttttggatg 992 ||||||||| Sbjct: 704850 ttttggatg 704842
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 42.1 bits (21), Expect = 6.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 979 ctgaattttggatgattgagcctgaacttgcctttgctgat 1019 |||||||||||||||| || |||||| | || ||||||||| Sbjct: 101627 ctgaattttggatgatagaacctgaaatggcttttgctgat 101587
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 42.1 bits (21), Expect = 6.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 981 gaattttggatgattgagcctgaacttgcctttgctgatct 1021 |||||||||||||||||||| ||| | ||||| || ||||| Sbjct: 2290214 gaattttggatgattgagccagaaatcgccttcgcggatct 2290254
>emb|CT025937.9| Mouse DNA sequence from clone RP24-264F1 on chromosome 16, complete sequence Length = 138912 Score = 42.1 bits (21), Expect = 6.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1314 attagagattatccaaaggaa 1334 ||||||||||||||||||||| Sbjct: 46412 attagagattatccaaaggaa 46432 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 322,273,075 Number of extensions: 16547891 Number of successful extensions: 325300 Number of sequences better than 10.0: 113 Number of HSP's gapped: 325283 Number of HSP's successfully gapped: 200 Length of query: 1804 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1781 Effective length of database: 18,503,978,556 Effective search space: 32955585808236 Effective search space used: 32955585808236 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)