ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf113e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q95155:OLF2_CANFA Olfactory receptor-like protein OLF2 - Canis f... 35 0.83
2Q8NH69:OR5W2_HUMAN Olfactory receptor 5W2 - Homo sapiens (Human) 34 2.4
3Q6SPE9:SAMD1_RABIT Atherin - Oryctolagus cuniculus (Rabbit) 31 2.8
4P16753:VP40_HCMVA Capsid protein P40 [Contains: Assemblin - Huma... 33 4.1
5Q15428:SF3A2_HUMAN Splicing factor 3A subunit 2 - Homo sapiens (... 33 4.1
6Q9Z2I6:SV2C_RAT Synaptic vesicle glycoprotein 2C - Rattus norveg... 33 5.4
7Q69ZS6:SV2C_MOUSE Synaptic vesicle glycoprotein 2C - Mus musculu... 33 5.4
8Q9QY00:OL154_MOUSE Olfactory receptor 154 - Mus musculus (Mouse) 33 5.4
9Q8U0I8:UPPS_PYRFU Undecaprenyl pyrophosphate synthetase - Pyroco... 32 7.0
10Q86UQ4:ABCAD_HUMAN ATP-binding cassette sub-family A member 13 -... 32 7.0
11Q62203:SF3A2_MOUSE Splicing factor 3A subunit 2 - Mus musculus (... 32 9.2
12Q99583:MNT_HUMAN Max-binding protein MNT - Homo sapiens (Human) 32 9.2
13Q9H9A6:LRC40_HUMAN Leucine-rich repeat-containing protein 40 - H... 32 9.2
14Q3JCM5:ANMK_NITOC Anhydro-N-acetylmuramic acid kinase - Nitrosoc... 32 9.2

>Q95155:OLF2_CANFA Olfactory receptor-like protein OLF2 - Canis familiaris (Dog)|
          Length = 311
 Score = 35.4 bits (80), Expect = 0.83
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
 Frame = +2

Query: 731 GFVEFDDVNGKVLTYSAQD-STYKVFDLKNYTLLYSICDKNVQEIKISPGIMLLIYTRTS 907
           GF+E   ++G  ++Y     +  K+   +     +S C  ++  + I  G ML +Y R S
Sbjct: 204 GFIELITLSGLFVSYCYIILAVRKINSAEGRFKAFSTCTSHLTAVAIFQGTMLFMYFRPS 263

Query: 908 SSIPL---KILSIEDGTVLKFFNHLLH--RNKKV 994
           SS  L   KI+S+    V+   N L++  RNK V
Sbjct: 264 SSYSLDQDKIISLFYSLVIPMLNPLIYSLRNKDV 297



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>Q8NH69:OR5W2_HUMAN Olfactory receptor 5W2 - Homo sapiens (Human)|
          Length = 310

 Score = 33.9 bits (76), Expect = 2.4
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
 Frame = +2

Query: 731  GFVEFDDVNGKVLTYSAQD-STYKVFDLKNYTLLYSICDKNVQEIKISPGIMLLIYTRTS 907
            GF+E   ++G  ++Y     S  ++   +      S C  ++  + I  G +L +Y R S
Sbjct: 204  GFIELSTISGVFISYCYIILSVLEIHSAEGRFKALSTCTSHLSAVAIFQGTLLFMYFRPS 263

Query: 908  SSIPL---KILSIEDGTVLKFFNHLLH--RNKKV-DFIEQFNEKLL 1027
            SS  L   K+ S+    V+   N L++  RNK V + +++   K+L
Sbjct: 264  SSYSLDQDKMTSLFYTLVVPMLNPLIYSLRNKDVKEALKKLKNKIL 309



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>Q6SPE9:SAMD1_RABIT Atherin - Oryctolagus cuniculus (Rabbit)|
          Length = 550

 Score = 31.2 bits (69), Expect(2) = 2.8
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 226 PPAVARP-GARRDPP---RLHPRQSASLLPPQPPAHAARNRSP 110
           PPA A P G RR PP    +  R+S    PPQPPA   + + P
Sbjct: 189 PPAAAPPAGPRRAPPPAAAVAARESPLPPPPQPPAPPQQQQQP 231



 Score = 21.2 bits (43), Expect(2) = 2.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 371 PPAAVCCGSAPARS 330
           PPA V   +APAR+
Sbjct: 135 PPAPVAAAAAPARA 148



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>P16753:VP40_HCMVA Capsid protein P40 [Contains: Assemblin - Human cytomegalovirus|
           (strain AD169) (HHV-5) (Human herpesvirus 5)
          Length = 708

 Score = 33.1 bits (74), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 250 SGPLPRHHPPAVARPGARRDPPRLHPRQSASLLPPQPPAHAARNRSPLT 104
           S P P   PP+  +P A    P + P +S   L P  PA AA    PL+
Sbjct: 293 SSPSPPVEPPSPVQPPALPASPSVLPAESPPSLSPSEPAEAASMSHPLS 341



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>Q15428:SF3A2_HUMAN Splicing factor 3A subunit 2 - Homo sapiens (Human)|
          Length = 464

 Score = 33.1 bits (74), Expect = 4.1
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 244 PLPRHHPPAVARPGARRDPPRLHPRQSASLLPPQPPAHAA 125
           P P  HPPA   PG     P +HP  SA + P  P  H A
Sbjct: 346 PAPGVHPPA---PGVHPPAPGVHPPPSAGVHPQAPGVHPA 382



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>Q9Z2I6:SV2C_RAT Synaptic vesicle glycoprotein 2C - Rattus norvegicus (Rat)|
          Length = 727

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 982 PMEEVVEEFQNCTILNRKNLQRNRAACSCINQKHYTRTDLYFLNILVTYGIQ*GVVFQVK 803
           P + +  EFQNC+ L+      N+  C       Y+   +YF+N L T  +  G      
Sbjct: 549 PYKFIDSEFQNCSFLH------NKTGCQITFDDDYSAYWIYFVNFLGTLAVLPG------ 596

Query: 802 NLVSAVL 782
           N+VSA+L
Sbjct: 597 NIVSALL 603



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>Q69ZS6:SV2C_MOUSE Synaptic vesicle glycoprotein 2C - Mus musculus (Mouse)|
          Length = 727

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 982 PMEEVVEEFQNCTILNRKNLQRNRAACSCINQKHYTRTDLYFLNILVTYGIQ*GVVFQVK 803
           P + +  EFQNC+ L+      N+  C       Y+   +YF+N L T  +  G      
Sbjct: 549 PYKFIDSEFQNCSFLH------NKTGCQITFDDDYSAYWIYFVNFLGTLAVLPG------ 596

Query: 802 NLVSAVL 782
           N+VSA+L
Sbjct: 597 NIVSALL 603



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>Q9QY00:OL154_MOUSE Olfactory receptor 154 - Mus musculus (Mouse)|
          Length = 318

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +2

Query: 830 YSICDKNVQEIKISPGIMLLIYTRTSSSIPL---KILSIEDGTVLKFFNHLLH--RNKKV 994
           +S C  ++  + I  G +  IY R SSS  L   K++S+   TV+   N  ++  RNK+V
Sbjct: 238 FSTCSSHLTAVSILYGTLFFIYVRPSSSFSLDINKVVSLFYTTVIPMLNPFIYSLRNKEV 297



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>Q8U0I8:UPPS_PYRFU Undecaprenyl pyrophosphate synthetase - Pyrococcus furiosus|
          Length = 264

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 11/149 (7%)
 Frame = -3

Query: 1189 EIPNCYRPIPESQKQLEFIQKDEGRWSHEL----------STAHFSQVEVPYIKYLKIFS 1040
            E P  Y     S+K  E ++     W HEL          ST +F + +    + +K+F 
Sbjct: 53   EKPPWYGHFFGSKKLEEIVE-----WCHELGIRILTVYAFSTENFKRSKEEVDRLMKLF- 106

Query: 1039 ILLNQELFIKLFNEIHLLIPMEEVVEEFQNCTILNRKNLQRNRAACSCINQKHYTRT-DL 863
                +E F +L  +         V E      ++ RK L       +    +  TR  + 
Sbjct: 107  ----EEKFRELVTD-------RRVHEYGIRVNVMGRKELLPKNVREAAEEAERVTRKYNN 155

Query: 862  YFLNILVTYGIQ*GVVFQVKNLVSAVLSG 776
            YFLNI + YG +  +V  +K++V+ VL G
Sbjct: 156  YFLNIALAYGGRSEIVDAIKDIVNDVLEG 184



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>Q86UQ4:ABCAD_HUMAN ATP-binding cassette sub-family A member 13 - Homo sapiens (Human)|
          Length = 5058

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 992  VDFIEQFNE---KLLVKQDGENLQILDVRNFHLTEVSSTEFMTPSAFIFLYELQLFLT 1156
            VDF EQF +    L +K+D EN   L ++ FH   ++   F+     + + +L  FLT
Sbjct: 2261 VDFTEQFLKTFFSLFLKEDSENKISLLLKYFHKDVIAEMSFVPKDKILEILKLDQFLT 2318



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>Q62203:SF3A2_MOUSE Splicing factor 3A subunit 2 - Mus musculus (Mouse)|
          Length = 475

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 244 PLPRHHPPAVARPGARRDPPRLHPRQSASLLPPQPPAH 131
           P P  HPPA   PG     P +HP  SA + P  P  H
Sbjct: 357 PAPGVHPPA---PGVHPPAPGVHPPPSAGVHPQAPGVH 391



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>Q99583:MNT_HUMAN Max-binding protein MNT - Homo sapiens (Human)|
          Length = 582

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 244 PLPRH---HPPAVARPGARRDPPRLHPRQSASL-LPPQPPAHAARNRSP 110
           PLP H   HP +VA P A     +  P+Q   L  PP PPA  A+   P
Sbjct: 377 PLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPAQTLVP 425



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>Q9H9A6:LRC40_HUMAN Leucine-rich repeat-containing protein 40 - Homo sapiens (Human)|
          Length = 602

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
 Frame = +2

Query: 689  AGFPLFETESLKWPGFVEFDDVNGKVLTYSAQDSTYKVFDLKNYTLLYSICDKNVQEIKI 868
            +G  L E     W   V+  +   + L++ A +  ++  DL    +  +       ++++
Sbjct: 44   SGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRL 103

Query: 869  SPGIMLL-IYTRTSSSIPLKILSIEDGTVLKFFNHLLH---------RNKKVDFIEQFNE 1018
             P + +L I+    +S+P  I  +E+   L   ++ L          RN K  ++ Q NE
Sbjct: 104  LPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNLRNLKCLYL-QHNE 162

Query: 1019 KLLVKQDGE---NLQILDVRNFHLTEVSST 1099
               + +  E   NL+ LD+ N HLT V ++
Sbjct: 163  LTCISEGFEQLSNLEDLDLSNNHLTTVPAS 192



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>Q3JCM5:ANMK_NITOC Anhydro-N-acetylmuramic acid kinase - Nitrosococcus oceani (strain|
            ATCC 19707 / NCIMB 11848)
          Length = 376

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +3

Query: 1467 LCTMT----KCAMRSTPATAMALFMCGRTESRDNRFQGTNKVLFICRRTNLTT---KPQV 1625
            LC +T    K A++S+      L +CG   + +   +G  K L  CR T  T     PQ 
Sbjct: 270  LCALTIASVKLAIQSSSPHTEELLICGGGANNETLMEGLRKQLAFCRVTTTTAYGIPPQW 329

Query: 1626 VLAAKRSWVSSR 1661
            V A   +W++ +
Sbjct: 330  VEACTFAWLAKQ 341


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 301,993,060
Number of extensions: 6401359
Number of successful extensions: 19203
Number of sequences better than 10.0: 14
Number of HSP's gapped: 19094
Number of HSP's successfully gapped: 15
Length of query: 627
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 508
Effective length of database: 68,045,334
Effective search space: 34567029672
Effective search space used: 34567029672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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