ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf108a10 |
|---|---|
| Clone Library Name | barley_pub |
>Q9ZCN4:Y689_RICPR Uncharacterized protein RP689 - Rickettsia prowazekii| Length = 266 Score = 57.0 bits (136), Expect = 2e-07 Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Frame = +1 Query: 220 LLTKTTRILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGVMNKTCAEISKFKAEFTA 399 L+ T +L ++ ++YW++ GTLLG R G+IP++ D+D+G+M++ + + +F Sbjct: 61 LMKDTHELLTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHLQQILPQFEQ 120 Query: 400 VGLT-AYDRSDYIAHKVKL 453 +G T +Y+R+ I K L Sbjct: 121 LGYTVSYERAYNICKKTCL 139
>Q9ZCN5:Y688_RICPR Uncharacterized protein RP688 - Rickettsia prowazekii| Length = 297 Score = 53.1 bits (126), Expect = 2e-06 Identities = 21/72 (29%), Positives = 42/72 (58%) Frame = +1 Query: 220 LLTKTTRILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGVMNKTCAEISKFKAEFTA 399 L+ T +L ++ ++YW++ GTLLG R G+IP++ D+D+G+M++ + + +F Sbjct: 110 LMKDTHELLTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHLQQILPQFEQ 169 Query: 400 VGLTAYDRSDYI 435 +G Y+ Sbjct: 170 LGYRVKHNKIYV 181
>Q68W49:Y683_RICTY Uncharacterized protein RT0683 - Rickettsia typhi| Length = 309 Score = 52.0 bits (123), Expect = 5e-06 Identities = 21/72 (29%), Positives = 41/72 (56%) Frame = +1 Query: 220 LLTKTTRILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGVMNKTCAEISKFKAEFTA 399 L+ T +L ++ ++YW++ GTLLG R G+IP++ D+D+G+M++ + +F Sbjct: 110 LMKDTHELLTKNNIKYWIESGTLLGAVRHQGIIPFDDDLDIGIMHEDEIHFQQILPQFKQ 169 Query: 400 VGLTAYDRSDYI 435 +G Y+ Sbjct: 170 LGYRIKHNKIYV 181
>Q8CG64:FKRP_MOUSE Fukutin-related protein - Mus musculus (Mouse)| Length = 494 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/36 (52%), Positives = 26/36 (72%) Frame = +1 Query: 241 ILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGV 348 +L+ V YWL+ G+LLG R +IPW+YDVDLG+ Sbjct: 332 VLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGI 367
>Q9H9S5:FKRP_HUMAN Fukutin-related protein - Homo sapiens (Human)| Length = 495 Score = 48.1 bits (113), Expect = 7e-05 Identities = 19/36 (52%), Positives = 26/36 (72%) Frame = +1 Query: 241 ILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGV 348 +L+ V YWL+ G+LLG R +IPW+YDVDLG+ Sbjct: 332 VLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGI 367
>Q8R507:FCMD_MOUSE Fukutin - Mus musculus (Mouse)| Length = 461 Score = 41.6 bits (96), Expect = 0.007 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Frame = +1 Query: 220 LLTKTTRILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGVMNKTCAEISKFKAE--- 390 LL + L+ V +WL GT LG +R G+IP+ DVDLG+ I +K + Sbjct: 280 LLQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIF------IQDYKPDIIL 333 Query: 391 -FTAVGLTAYDRSDYIAHKVKLTYDTEN 471 F GL + + ++L++ +N Sbjct: 334 AFQEAGLPLKHKFGKVEDSLELSFQGKN 361
>Q60HG0:FCMD_MACFA Fukutin - Macaca fascicularis (Crab eating macaque) (Cynomolgus| monkey) Length = 461 Score = 40.4 bits (93), Expect = 0.015 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 202 RATMSVLLTKTTRILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGV 348 R + LL + L + V +WL GT LG +R +IP+ DVDLG+ Sbjct: 274 RKSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGI 322
>O75072:FCMD_HUMAN Fukutin - Homo sapiens (Human)| Length = 461 Score = 40.4 bits (93), Expect = 0.015 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 202 RATMSVLLTKTTRILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDLGV 348 R + LL + L + V +WL GT LG +R +IP+ DVDLG+ Sbjct: 274 RKSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGI 322
>P14184:LICD_HAEIN Lipopolysaccharide cholinephosphotransferase licD - Haemophilus| influenzae Length = 265 Score = 38.9 bits (89), Expect = 0.044 Identities = 15/34 (44%), Positives = 23/34 (67%) Frame = +1 Query: 241 ILQRHKVEYWLDKGTLLGVHRDDGLIPWEYDVDL 342 + +R+K+ Y L GTL+G R G IPW+ D+D+ Sbjct: 23 LCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDV 56
>O08796:EF2K_MOUSE Elongation factor 2 kinase - Mus musculus (Mouse)| Length = 724 Score = 33.5 bits (75), Expect = 1.8 Identities = 26/84 (30%), Positives = 37/84 (44%) Frame = +3 Query: 201 PRDHERVADQDHEDSSAPQGRVLARQRNVARCAPRRRADPVGVRC*LGRHEQDVRRDLQV 380 PRDH+R+ + ++S G ++ ++ PR G R RHE D L Sbjct: 422 PRDHDRMDNHRDSENSGDSGYPSEKRSDLDDPEPREHGHSNGNR----RHESD-EDSLGS 476 Query: 381 QGRVHSRGTHGL*PVRLHCPQGQA 452 GRV + L P RLH P+ A Sbjct: 477 SGRVCVETWNLLNPSRLHLPRPSA 500
>Q9XYB7:NHR8_CAEEL Nuclear hormone receptor family member nhr-8 - Caenorhabditis elegans| Length = 560 Score = 32.7 bits (73), Expect = 3.2 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = -2 Query: 1155 APPPNEPKGRICQI---HRTLYGAGVMIPTTCVSFQNLHLLPYRLISCLHTPPLEARAAA 985 A PP EP GRIC + Y GV+ +C +F + ++ I C + + +A+ Sbjct: 15 AVPPKEPAGRICTVCSDRANGYNFGVLTCESCKAFFRRNASKHKEIKCPFSDSCQITSAS 74 Query: 984 RQ 979 R+ Sbjct: 75 RK 76
>P63738:CARB_SHIFL Carbamoyl-phosphate synthase large chain - Shigella flexneri| Length = 1073 Score = 32.0 bits (71), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = -2 Query: 294 TEQRSFVEPV-----LDLVALKNPRGLGQQH----------AHGRAGVALAVHKPQRIER 160 T R + EPV L++V ++ P+G+ Q+ A AGV + P I+R Sbjct: 612 TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDR 671 Query: 159 GHDHERHQH 133 D ER QH Sbjct: 672 AEDRERFQH 680
>P14846:CARB_SALTY Carbamoyl-phosphate synthase large chain - Salmonella typhimurium| Length = 1075 Score = 32.0 bits (71), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = -2 Query: 294 TEQRSFVEPV-----LDLVALKNPRGLGQQH----------AHGRAGVALAVHKPQRIER 160 T R + EPV L++V ++ P+G+ Q+ A AGV + P I+R Sbjct: 612 TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDR 671 Query: 159 GHDHERHQH 133 D ER QH Sbjct: 672 AEDRERFQH 680
>Q8Z9L7:CARB_SALTI Carbamoyl-phosphate synthase large chain - Salmonella typhi| Length = 1075 Score = 32.0 bits (71), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = -2 Query: 294 TEQRSFVEPV-----LDLVALKNPRGLGQQH----------AHGRAGVALAVHKPQRIER 160 T R + EPV L++V ++ P+G+ Q+ A AGV + P I+R Sbjct: 612 TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDR 671 Query: 159 GHDHERHQH 133 D ER QH Sbjct: 672 AEDRERFQH 680
>P00968:CARB_ECOLI Carbamoyl-phosphate synthase large chain - Escherichia coli| Length = 1073 Score = 32.0 bits (71), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = -2 Query: 294 TEQRSFVEPV-----LDLVALKNPRGLGQQH----------AHGRAGVALAVHKPQRIER 160 T R + EPV L++V ++ P+G+ Q+ A AGV + P I+R Sbjct: 612 TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDR 671 Query: 159 GHDHERHQH 133 D ER QH Sbjct: 672 AEDRERFQH 680
>Q8FLB0:CARB_ECOL6 Carbamoyl-phosphate synthase large chain - Escherichia coli O6| Length = 1073 Score = 32.0 bits (71), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = -2 Query: 294 TEQRSFVEPV-----LDLVALKNPRGLGQQH----------AHGRAGVALAVHKPQRIER 160 T R + EPV L++V ++ P+G+ Q+ A AGV + P I+R Sbjct: 612 TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDR 671 Query: 159 GHDHERHQH 133 D ER QH Sbjct: 672 AEDRERFQH 680
>P63737:CARB_ECO57 Carbamoyl-phosphate synthase large chain - Escherichia coli O157:H7| Length = 1073 Score = 32.0 bits (71), Expect = 5.4 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Frame = -2 Query: 294 TEQRSFVEPV-----LDLVALKNPRGLGQQH----------AHGRAGVALAVHKPQRIER 160 T R + EPV L++V ++ P+G+ Q+ A AGV + P I+R Sbjct: 612 TSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDR 671 Query: 159 GHDHERHQH 133 D ER QH Sbjct: 672 AEDRERFQH 680
>Q03167:TGBR3_HUMAN TGF-beta receptor type III precursor - Homo sapiens (Human)| Length = 850 Score = 31.6 bits (70), Expect = 7.0 Identities = 13/43 (30%), Positives = 23/43 (53%) Frame = +3 Query: 1101 KACGGSDRSFLWAHLEEELFRTLPTSINRRDATTKANGPKKKK 1229 +AC D S +WA ++ + T P ++ +A +K GP K+ Sbjct: 727 EACTSLDASIIWAMMQNKKTFTKPLAVIHHEAESKEKGPSMKE 769
>O00548:DLL1_HUMAN Delta-like protein 1 precursor - Homo sapiens (Human)| Length = 723 Score = 31.6 bits (70), Expect = 7.0 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 517 GYTGRACTDPTSKSGGSPCRT*A*PCGQCSRTGHR 413 GYTGR C+ P S+ +PC A C GHR Sbjct: 472 GYTGRNCSAPVSRCEHAPCHNGA----TCHERGHR 502
>Q94KR7:IF1C_SOYBN Translation initiation factor IF-1, chloroplast precursor - Glycine| max (Soybean) Length = 138 Score = 31.2 bits (69), Expect = 9.2 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = -2 Query: 1074 TCVSFQNLHLLPY-RLISCLHTPPLEARAAARQDGLSTAPDCDGQRNQESQQEELERVPY 898 +C F L L P+ R +S L PPL A A + PD G++ + +E +P Sbjct: 21 SCTQFSPLALPPFHRTLSFLAPPPLLPAAPALSAASAAKPDKSGEQKWVHEGLIMESLPN 80 Query: 897 GM 892 GM Sbjct: 81 GM 82 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 213,884,771 Number of extensions: 4829195 Number of successful extensions: 14397 Number of sequences better than 10.0: 20 Number of HSP's gapped: 14357 Number of HSP's successfully gapped: 20 Length of query: 410 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 294 Effective length of database: 68,868,219 Effective search space: 20247256386 Effective search space used: 20247256386 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
