ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf107o01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK241759.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 119 1e-23
2ref|NM_001062693.1| Oryza sativa (japonica cultivar-group) Os05g... 119 1e-23
3dbj|AK062545.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
4dbj|AK061590.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
5gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 105 2e-19
6gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
8gb|DQ245693.1| Zea mays clone 19361 mRNA sequence 68 4e-08
9gb|BT017056.1| Zea mays clone EL01N0357A10.c mRNA sequence 68 4e-08
10gb|AY107175.1| Zea mays PCO135528 mRNA sequence 68 4e-08
11emb|AL606525.7| Mouse DNA sequence from clone RP23-235J20 on chr... 44 0.58
12ref|XM_001098724.1| PREDICTED: Macaca mulatta hypothetical prote... 40 9.0
13gb|AC120780.32| Pan troglodytes clone rp43-22b16, complete sequence 40 9.0
14gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, com... 40 9.0
15emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 9.0
16gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 9.0
17gb|AC005632.2| Homo sapiens BAC clone CTB-31N19 from 16, complet... 40 9.0
18emb|AL032684.1|SPBP8B7 S.pombe chromosome II p1 p8B7 40 9.0
19gb|AF497853.1| Methylobacterium extorquens AM1 glucose-6-phospha... 40 9.0
20gb|AC011362.2|AC011362 Homo sapiens chromosome 5 clone CTC-503K1... 40 9.0
21gb|AF033033.2|AF033033 Homo sapiens TIRC7 protein (TCIRG1) gene,... 40 9.0
22emb|AL807795.7| Mouse DNA sequence from clone RP23-199A9 on chro... 40 9.0
23dbj|AP002807.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.0

>dbj|AK241759.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065204J07, full
            insert sequence
          Length = 3810
 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                        
Query: 150  cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209
            ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||
Sbjct: 2889 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 2830

                                                            
Query: 210  gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257
             || |||| |||||| ||||||||||| ||| | ||||| ||||||||
Sbjct: 2829 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 2782



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 77   tgggtttcatgctgcgggtgaggctggcctccttctt 113
            |||| ||||||||||||||||||||||||||||||||
Sbjct: 2962 tggggttcatgctgcgggtgaggctggcctccttctt 2926



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>ref|NM_001062693.1| Oryza sativa (japonica cultivar-group) Os05g0535700 (Os05g0535700)
           mRNA, complete cds
          Length = 591

 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209
           ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||
Sbjct: 183 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 242

                                                           
Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257
            || |||| |||||| ||||||||||| ||| | ||||| ||||||||
Sbjct: 243 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 290



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 77  tgggtttcatgctgcgggtgaggctggcctccttctt 113
           |||| ||||||||||||||||||||||||||||||||
Sbjct: 110 tggggttcatgctgcgggtgaggctggcctccttctt 146



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>dbj|AK062545.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G06, full
           insert sequence
          Length = 591

 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209
           ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||
Sbjct: 183 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 242

                                                           
Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257
            || |||| |||||| ||||||||||| ||| | ||||| ||||||||
Sbjct: 243 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 290



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 77  tgggtttcatgctgcgggtgaggctggcctccttctt 113
           |||| ||||||||||||||||||||||||||||||||
Sbjct: 110 tggggttcatgctgcgggtgaggctggcctccttctt 146



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>dbj|AK061590.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H05, full
           insert sequence
          Length = 524

 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                       
Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209
           ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||
Sbjct: 124 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 183

                                                           
Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257
            || |||| |||||| ||||||||||| ||| | ||||| ||||||||
Sbjct: 184 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 231



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 77  tgggtttcatgctgcgggtgaggctggcctccttctt 113
           |||| ||||||||||||||||||||||||||||||||
Sbjct: 51  tggggttcatgctgcgggtgaggctggcctccttctt 87



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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  105 bits (53), Expect = 2e-19
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                  
Query: 148   tacttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 200
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39712 tacttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 39764



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 77    tgggtttcatgctgcgggtgaggctggcctccttctt 113
             |||| ||||| |||||||||||||||| |||||||||
Sbjct: 39641 tggggttcatactgcgggtgaggctggtctccttctt 39677



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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                
Query: 150   cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 200
             ||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 44926 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggt 44876



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                  
Query: 77    tgggtttcatgctgcgggtgaggctggcctccttctt 113
             |||| ||||||||||||||||||||||||||||||||
Sbjct: 44999 tggggttcatgctgcgggtgaggctggcctccttctt 44963



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                         
Query: 196   caggtgaaaggtctgcacgaccgtgtggacgcccgttacaaggctatcgacaagcgactt 255
             ||||| ||||| || || |||| |||||| ||||||||||| ||| | ||||| ||||||
Sbjct: 43250 caggtcaaaggcctacaagaccatgtggatgcccgttacaaagctcttgacaaacgactt 43191

               
Query: 256   gc 257
             ||
Sbjct: 43190 gc 43189



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                   
Query: 150      cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 200
                ||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 26400235 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggt 26400185



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                     
Query: 77       tgggtttcatgctgcgggtgaggctggcctccttctt 113
                |||| ||||||||||||||||||||||||||||||||
Sbjct: 26400308 tggggttcatgctgcgggtgaggctggcctccttctt 26400272



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                            
Query: 196      caggtgaaaggtctgcacgaccgtgtggacgcccgttacaaggctatcgacaagcgactt 255
                ||||| ||||| || || |||| |||||| ||||||||||| ||| | ||||| ||||||
Sbjct: 26398559 caggtcaaaggcctacaagaccatgtggatgcccgttacaaagctcttgacaaacgactt 26398500

                  
Query: 256      gc 257
                ||
Sbjct: 26398499 gc 26398498



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>gb|DQ245693.1| Zea mays clone 19361 mRNA sequence
          Length = 606

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 148 tacttcctctacaaggactacaagctcgcccacgactc 185
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 166 tacttcctctacaaggactacaagctcgccaacgactc 203



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 77  tgggtttcatgctgcgggtgaggctggcctccttctt 113
           |||| |||||||||||||||||||| |||||||||||
Sbjct: 95  tggggttcatgctgcgggtgaggctcgcctccttctt 131



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>gb|BT017056.1| Zea mays clone EL01N0357A10.c mRNA sequence
          Length = 616

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 148 tacttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggt 207
           |||||||||||||||||||||||||||||| ||||||  |  |||||| |||||||| ||
Sbjct: 204 tacttcctctacaaggactacaagctcgccaacgactttatggccctcaaggtgaaatgt 263

             
Query: 208 ct 209
           ||
Sbjct: 264 ct 265



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 77  tgggtttcatgctgcgggtgaggctggcctcctt 110
           |||| |||||||||||||||||||| ||||||||
Sbjct: 133 tggggttcatgctgcgggtgaggctcgcctcctt 166



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>gb|AY107175.1| Zea mays PCO135528 mRNA sequence
          Length = 595

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 148 tacttcctctacaaggactacaagctcgcccacgactc 185
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 240 tacttcctctacaaggactacaagctcgccaacgactc 277



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 77  tgggtttcatgctgcgggtgaggctggcctccttctt 113
           |||| |||||||||||||||||||| |||||||||||
Sbjct: 169 tggggttcatgctgcgggtgaggctcgcctccttctt 205



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>emb|AL606525.7| Mouse DNA sequence from clone RP23-235J20 on chromosome 13 Contains five
              novel genes and a CpG island, complete sequence
          Length = 187348

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 397    cttctcctttgaaggcaagggg 418
              ||||||||||||||||||||||
Sbjct: 112712 cttctcctttgaaggcaagggg 112691



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>ref|XM_001098724.1| PREDICTED: Macaca mulatta hypothetical protein LOC703692,
           transcript variant 1 (LOC703692), mRNA
          Length = 2993

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 359 tctaagtctgtttactttta 378
           ||||||||||||||||||||
Sbjct: 193 tctaagtctgtttactttta 212



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>gb|AC120780.32| Pan troglodytes clone rp43-22b16, complete sequence
          Length = 193047

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 360   ctaagtctgtttacttttaacatg 383
             |||||||| |||||||||||||||
Sbjct: 27310 ctaagtctttttacttttaacatg 27333



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>gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, complete sequence
          Length = 206192

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 89    tgcgggtgaggctggcctccttct 112
             ||||||||||||||| ||||||||
Sbjct: 40311 tgcgggtgaggctgggctccttct 40288



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     tcatgctgcgggtgaggctg 102
              ||||||||||||||||||||
Sbjct: 336727 tcatgctgcgggtgaggctg 336746



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     ccgccctccaggtgaaaggt 207
               ||||||||||||||||||||
Sbjct: 1474031 ccgccctccaggtgaaaggt 1474012



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>gb|AC005632.2| Homo sapiens BAC clone CTB-31N19 from 16, complete sequence
          Length = 200594

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 360    ctaagtctgtttacttttaacatg 383
              |||||||| |||||||||||||||
Sbjct: 141673 ctaagtctttttacttttaacatg 141650



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>emb|AL032684.1|SPBP8B7 S.pombe chromosome II p1 p8B7
          Length = 71000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   cctgtgaccgacagcgaaat 438
             ||||||||||||||||||||
Sbjct: 65239 cctgtgaccgacagcgaaat 65220



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>gb|AF497853.1| Methylobacterium extorquens AM1 glucose-6-phosphate 1-dehydrogenase
            gene, complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 149  acttcctctacaaggactac 168
            ||||||||||||||||||||
Sbjct: 1931 acttcctctacaaggactac 1950



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>gb|AC011362.2|AC011362 Homo sapiens chromosome 5 clone CTC-503K11, complete sequence
          Length = 176029

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   tctaagtctgtttactttta 378
             ||||||||||||||||||||
Sbjct: 75574 tctaagtctgtttactttta 75555



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>gb|AF033033.2|AF033033 Homo sapiens TIRC7 protein (TCIRG1) gene, complete cds
          Length = 12234

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 89   tgcgggtgaggctggcctccttct 112
            ||||||||||||||| ||||||||
Sbjct: 5722 tgcgggtgaggctgggctccttct 5745



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>emb|AL807795.7| Mouse DNA sequence from clone RP23-199A9 on chromosome X, complete
             sequence
          Length = 152159

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   aagtctgtttacttttaaca 381
             ||||||||||||||||||||
Sbjct: 46690 aagtctgtttacttttaaca 46709



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>dbj|AP002807.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802E16, complete
             sequences
          Length = 63433

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    tgcgggtgaggctggcctccttct 112
             ||||||||||||||| ||||||||
Sbjct: 16107 tgcgggtgaggctgggctccttct 16130


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 85,058,443
Number of extensions: 5357428
Number of successful extensions: 122095
Number of sequences better than 10.0: 23
Number of HSP's gapped: 122095
Number of HSP's successfully gapped: 35
Length of query: 614
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 592
Effective length of database: 18,508,616,841
Effective search space: 10957101169872
Effective search space used: 10957101169872
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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