| Clone Name | FLbaf107o01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK241759.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065204J07, full insert sequence Length = 3810 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Minus Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 2889 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 2830 Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257 || |||| |||||| ||||||||||| ||| | ||||| |||||||| Sbjct: 2829 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 2782 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||||||||||||||| Sbjct: 2962 tggggttcatgctgcgggtgaggctggcctccttctt 2926
>ref|NM_001062693.1| Oryza sativa (japonica cultivar-group) Os05g0535700 (Os05g0535700) mRNA, complete cds Length = 591 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 183 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 242 Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257 || |||| |||||| ||||||||||| ||| | ||||| |||||||| Sbjct: 243 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 290 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||||||||||||||| Sbjct: 110 tggggttcatgctgcgggtgaggctggcctccttctt 146
>dbj|AK062545.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G06, full insert sequence Length = 591 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 183 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 242 Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257 || |||| |||||| ||||||||||| ||| | ||||| |||||||| Sbjct: 243 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 290 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||||||||||||||| Sbjct: 110 tggggttcatgctgcgggtgaggctggcctccttctt 146
>dbj|AK061590.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H05, full insert sequence Length = 524 Score = 119 bits (60), Expect = 1e-23 Identities = 96/108 (88%) Strand = Plus / Plus Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggtct 209 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 124 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggtcaaaggcct 183 Query: 210 gcacgaccgtgtggacgcccgttacaaggctatcgacaagcgacttgc 257 || |||| |||||| ||||||||||| ||| | ||||| |||||||| Sbjct: 184 acaagaccatgtggatgcccgttacaaagctcttgacaaacgacttgc 231 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||||||||||||||| Sbjct: 51 tggggttcatgctgcgggtgaggctggcctccttctt 87
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 105 bits (53), Expect = 2e-19 Identities = 53/53 (100%) Strand = Plus / Plus Query: 148 tacttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 200 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39712 tacttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 39764 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| ||||| |||||||||||||||| ||||||||| Sbjct: 39641 tggggttcatactgcgggtgaggctggtctccttctt 39677
>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01, complete sequence Length = 147704 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 200 |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 44926 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggt 44876 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||||||||||||||| Sbjct: 44999 tggggttcatgctgcgggtgaggctggcctccttctt 44963 Score = 44.1 bits (22), Expect = 0.58 Identities = 52/62 (83%) Strand = Plus / Minus Query: 196 caggtgaaaggtctgcacgaccgtgtggacgcccgttacaaggctatcgacaagcgactt 255 ||||| ||||| || || |||| |||||| ||||||||||| ||| | ||||| |||||| Sbjct: 43250 caggtcaaaggcctacaagaccatgtggatgcccgttacaaagctcttgacaaacgactt 43191 Query: 256 gc 257 || Sbjct: 43190 gc 43189
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 150 cttcctctacaaggactacaagctcgcccacgactccaccgccctccaggt 200 |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 26400235 cttcctctacaaggactacaagctcgcccacgactccatggccctccaggt 26400185 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||||||||||||||| Sbjct: 26400308 tggggttcatgctgcgggtgaggctggcctccttctt 26400272 Score = 44.1 bits (22), Expect = 0.58 Identities = 52/62 (83%) Strand = Plus / Minus Query: 196 caggtgaaaggtctgcacgaccgtgtggacgcccgttacaaggctatcgacaagcgactt 255 ||||| ||||| || || |||| |||||| ||||||||||| ||| | ||||| |||||| Sbjct: 26398559 caggtcaaaggcctacaagaccatgtggatgcccgttacaaagctcttgacaaacgactt 26398500 Query: 256 gc 257 || Sbjct: 26398499 gc 26398498
>gb|DQ245693.1| Zea mays clone 19361 mRNA sequence Length = 606 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 148 tacttcctctacaaggactacaagctcgcccacgactc 185 |||||||||||||||||||||||||||||| ||||||| Sbjct: 166 tacttcctctacaaggactacaagctcgccaacgactc 203 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||| ||||||||||| Sbjct: 95 tggggttcatgctgcgggtgaggctcgcctccttctt 131
>gb|BT017056.1| Zea mays clone EL01N0357A10.c mRNA sequence Length = 616 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 148 tacttcctctacaaggactacaagctcgcccacgactccaccgccctccaggtgaaaggt 207 |||||||||||||||||||||||||||||| |||||| | |||||| |||||||| || Sbjct: 204 tacttcctctacaaggactacaagctcgccaacgactttatggccctcaaggtgaaatgt 263 Query: 208 ct 209 || Sbjct: 264 ct 265 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctcctt 110 |||| |||||||||||||||||||| |||||||| Sbjct: 133 tggggttcatgctgcgggtgaggctcgcctcctt 166
>gb|AY107175.1| Zea mays PCO135528 mRNA sequence Length = 595 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 148 tacttcctctacaaggactacaagctcgcccacgactc 185 |||||||||||||||||||||||||||||| ||||||| Sbjct: 240 tacttcctctacaaggactacaagctcgccaacgactc 277 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 77 tgggtttcatgctgcgggtgaggctggcctccttctt 113 |||| |||||||||||||||||||| ||||||||||| Sbjct: 169 tggggttcatgctgcgggtgaggctcgcctccttctt 205
>emb|AL606525.7| Mouse DNA sequence from clone RP23-235J20 on chromosome 13 Contains five novel genes and a CpG island, complete sequence Length = 187348 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 397 cttctcctttgaaggcaagggg 418 |||||||||||||||||||||| Sbjct: 112712 cttctcctttgaaggcaagggg 112691
>ref|XM_001098724.1| PREDICTED: Macaca mulatta hypothetical protein LOC703692, transcript variant 1 (LOC703692), mRNA Length = 2993 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 tctaagtctgtttactttta 378 |||||||||||||||||||| Sbjct: 193 tctaagtctgtttactttta 212
>gb|AC120780.32| Pan troglodytes clone rp43-22b16, complete sequence Length = 193047 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 ctaagtctgtttacttttaacatg 383 |||||||| ||||||||||||||| Sbjct: 27310 ctaagtctttttacttttaacatg 27333
>gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, complete sequence Length = 206192 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgcgggtgaggctggcctccttct 112 ||||||||||||||| |||||||| Sbjct: 40311 tgcgggtgaggctgggctccttct 40288
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tcatgctgcgggtgaggctg 102 |||||||||||||||||||| Sbjct: 336727 tcatgctgcgggtgaggctg 336746
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 ccgccctccaggtgaaaggt 207 |||||||||||||||||||| Sbjct: 1474031 ccgccctccaggtgaaaggt 1474012
>gb|AC005632.2| Homo sapiens BAC clone CTB-31N19 from 16, complete sequence Length = 200594 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 ctaagtctgtttacttttaacatg 383 |||||||| ||||||||||||||| Sbjct: 141673 ctaagtctttttacttttaacatg 141650
>emb|AL032684.1|SPBP8B7 S.pombe chromosome II p1 p8B7 Length = 71000 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 cctgtgaccgacagcgaaat 438 |||||||||||||||||||| Sbjct: 65239 cctgtgaccgacagcgaaat 65220
>gb|AF497853.1| Methylobacterium extorquens AM1 glucose-6-phosphate 1-dehydrogenase gene, complete cds Length = 2187 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 acttcctctacaaggactac 168 |||||||||||||||||||| Sbjct: 1931 acttcctctacaaggactac 1950
>gb|AC011362.2|AC011362 Homo sapiens chromosome 5 clone CTC-503K11, complete sequence Length = 176029 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 tctaagtctgtttactttta 378 |||||||||||||||||||| Sbjct: 75574 tctaagtctgtttactttta 75555
>gb|AF033033.2|AF033033 Homo sapiens TIRC7 protein (TCIRG1) gene, complete cds Length = 12234 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 tgcgggtgaggctggcctccttct 112 ||||||||||||||| |||||||| Sbjct: 5722 tgcgggtgaggctgggctccttct 5745
>emb|AL807795.7| Mouse DNA sequence from clone RP23-199A9 on chromosome X, complete sequence Length = 152159 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 aagtctgtttacttttaaca 381 |||||||||||||||||||| Sbjct: 46690 aagtctgtttacttttaaca 46709
>dbj|AP002807.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802E16, complete sequences Length = 63433 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 tgcgggtgaggctggcctccttct 112 ||||||||||||||| |||||||| Sbjct: 16107 tgcgggtgaggctgggctccttct 16130 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 85,058,443 Number of extensions: 5357428 Number of successful extensions: 122095 Number of sequences better than 10.0: 23 Number of HSP's gapped: 122095 Number of HSP's successfully gapped: 35 Length of query: 614 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 592 Effective length of database: 18,508,616,841 Effective search space: 10957101169872 Effective search space used: 10957101169872 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)