ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf110n02 |
|---|---|
| Clone Library Name | barley_pub |
>O64464:PSB1_ORYSJ Proteasome subunit beta type 1 - Oryza sativa subsp. japonica (Rice)| Length = 221 Score = 179 bits (455), Expect = 5e-44 Identities = 84/89 (94%), Positives = 88/89 (98%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCV++YDAVGSYERTGY Sbjct: 80 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGY 139 Query: 2700 SAQGSGSTLIMPVLDNQLKSPSPLLVPAR 2786 SAQG+GS LIMPVLDNQLKSPSPLL+PAR Sbjct: 140 SAQGTGSALIMPVLDNQLKSPSPLLLPAR 168 Score = 107 bits (266), Expect = 4e-22 Identities = 49/50 (98%), Positives = 50/50 (100%) Frame = +2 Query: 104 MSRRGDWVYENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 MSRRGDWVYENNGGTCVAIAGADYCVVAADTRLSVGYNILTR+HSKICEL Sbjct: 1 MSRRGDWVYENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICEL 50 Score = 57.8 bits (138), Expect(2) = 3e-15 Identities = 28/30 (93%), Positives = 30/30 (100%) Frame = +2 Query: 2963 QDAVTPLSESEAVDLVKDVFASATERDIYT 3052 +DAVTPLSE+EAVDLVKDVFASATERDIYT Sbjct: 168 RDAVTPLSETEAVDLVKDVFASATERDIYT 197 Score = 47.0 bits (110), Expect(2) = 3e-15 Identities = 21/24 (87%), Positives = 24/24 (100%) Frame = +3 Query: 3147 GDKVEIVVINKAGTRREYIELRKD 3218 GDK+EIVVINKAGT+REYI+LRKD Sbjct: 198 GDKLEIVVINKAGTKREYIDLRKD 221 Score = 51.6 bits (122), Expect = 2e-05 Identities = 24/28 (85%), Positives = 26/28 (92%) Frame = +2 Query: 1502 ADKCVIASSGFQGDIKALQKNLAARELV 1585 ADKC +ASSGFQGDIKAL KNLAAREL+ Sbjct: 51 ADKCALASSGFQGDIKALHKNLAARELL 78
>O82531:PSB1_PETHY Proteasome subunit beta type 1 - Petunia hybrida (Petunia)| Length = 223 Score = 172 bits (435), Expect = 1e-41 Identities = 79/89 (88%), Positives = 86/89 (96%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 QHQHNK+MSCPAM QLLSNTLYYKRFFPYY+FNVLGGLDSEGKGCV++YDAVGSYER GY Sbjct: 82 QHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGY 141 Query: 2700 SAQGSGSTLIMPVLDNQLKSPSPLLVPAR 2786 S+QGSGSTLIMP LDNQLKSPSPLL+PA+ Sbjct: 142 SSQGSGSTLIMPFLDNQLKSPSPLLLPAQ 170 Score = 77.4 bits (189), Expect = 4e-13 Identities = 33/42 (78%), Positives = 40/42 (95%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y+NNGGTCVA+AGADYCV+AADTR+S GYNILTR++SKI +L Sbjct: 11 YDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKL 52 Score = 54.3 bits (129), Expect(2) = 4e-11 Identities = 26/30 (86%), Positives = 28/30 (93%) Frame = +2 Query: 2963 QDAVTPLSESEAVDLVKDVFASATERDIYT 3052 QDAVTPLSE+EA+DLVK FASATERDIYT Sbjct: 170 QDAVTPLSEAEAIDLVKTCFASATERDIYT 199 Score = 36.6 bits (83), Expect(2) = 4e-11 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = +3 Query: 3147 GDKVEIVVINKAGTRREYIELRKD 3218 GD++EIV++N +G RRE +ELRKD Sbjct: 200 GDRLEIVILNASGIRREEMELRKD 223 Score = 45.1 bits (105), Expect = 0.002 Identities = 20/28 (71%), Positives = 25/28 (89%) Frame = +2 Query: 1502 ADKCVIASSGFQGDIKALQKNLAARELV 1585 ADKCV+ASSGFQ D++ALQK LA+R L+ Sbjct: 53 ADKCVMASSGFQADVRALQKVLASRHLI 80
>P42742:PSB1_ARATH Proteasome subunit beta type 1 - Arabidopsis thaliana (Mouse-ear| cress) Length = 223 Score = 169 bits (429), Expect = 5e-41 Identities = 79/91 (86%), Positives = 85/91 (93%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 QHQHNK+MSCPAMAQLLSNTLY+KRFFPYYAFNVLGGLD EGKGCV++YDAVGSYER GY Sbjct: 82 QHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGY 141 Query: 2700 SAQGSGSTLIMPVLDNQLKSPSPLLVPARVS 2792 AQGSGSTLIMP LDNQLKSPSPLL+P + S Sbjct: 142 GAQGSGSTLIMPFLDNQLKSPSPLLLPKQDS 172 Score = 72.4 bits (176), Expect = 1e-11 Identities = 31/42 (73%), Positives = 40/42 (95%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y+NNGGTCVAIAG+DYCV+AADTR+S GY+IL+R++SKI +L Sbjct: 11 YDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKL 52 Score = 52.8 bits (125), Expect(2) = 2e-08 Identities = 26/30 (86%), Positives = 28/30 (93%) Frame = +2 Query: 2963 QDAVTPLSESEAVDLVKDVFASATERDIYT 3052 QD+ TPLSE+EAVDLVK VFASATERDIYT Sbjct: 170 QDSNTPLSEAEAVDLVKTVFASATERDIYT 199 Score = 28.9 bits (63), Expect(2) = 2e-08 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +3 Query: 3147 GDKVEIVVINKAGTRREYIELRKD 3218 GDK+EI+++ G + E ++LRKD Sbjct: 200 GDKLEIMILKADGIKTELMDLRKD 223 Score = 38.9 bits (89), Expect = 0.15 Identities = 17/28 (60%), Positives = 23/28 (82%) Frame = +2 Query: 1502 ADKCVIASSGFQGDIKALQKNLAARELV 1585 AD+ V++SSGFQ D+KALQK L +R L+ Sbjct: 53 ADRAVLSSSGFQADVKALQKVLKSRHLI 80
>O09061:PSB1_MOUSE Proteasome subunit beta type 1 precursor - Mus musculus (Mouse)| Length = 240 Score = 100 bits (250), Expect = 3e-20 Identities = 43/78 (55%), Positives = 59/78 (75%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG VYS+D VGSY+R + Sbjct: 103 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSF 162 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A GS S ++ P+LDNQ+ Sbjct: 163 KAGGSASAMLQPLLDNQV 180 Score = 48.1 bits (113), Expect = 2e-04 Identities = 23/42 (54%), Positives = 31/42 (73%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT +AIAG D+ +VA+DTRLS G++I TR+ K +L Sbjct: 32 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKL 73 Score = 35.0 bits (79), Expect = 2.1 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +2 Query: 2978 PLSESEAVDLVKDVFASATERDIYT 3052 PL+ A+ LVKDVF SA ERD+YT Sbjct: 192 PLTLDRAMRLVKDVFISAAERDVYT 216
>P20618:PSB1_HUMAN Proteasome subunit beta type 1 precursor - Homo sapiens (Human)| Length = 241 Score = 100 bits (250), Expect = 3e-20 Identities = 43/78 (55%), Positives = 59/78 (75%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG VYS+D VGSY+R + Sbjct: 104 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSF 163 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A GS S ++ P+LDNQ+ Sbjct: 164 KAGGSASAMLQPLLDNQV 181 Score = 48.1 bits (113), Expect = 2e-04 Identities = 23/42 (54%), Positives = 31/42 (73%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT +AIAG D+ +VA+DTRLS G++I TR+ K +L Sbjct: 33 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKL 74 Score = 36.2 bits (82), Expect = 0.95 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = +2 Query: 2978 PLSESEAVDLVKDVFASATERDIYT 3052 PLS A+ LVKDVF SA ERD+YT Sbjct: 193 PLSLDRAMRLVKDVFISAAERDVYT 217
>Q2TBX6:PSB1_BOVIN Proteasome subunit beta type 1 precursor - Bos taurus (Bovine)| Length = 241 Score = 100 bits (250), Expect = 3e-20 Identities = 43/78 (55%), Positives = 59/78 (75%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EGKG VYS+D VGSY+R + Sbjct: 104 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSF 163 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A GS S ++ P+LDNQ+ Sbjct: 164 KAGGSASAMLQPLLDNQV 181 Score = 48.1 bits (113), Expect = 2e-04 Identities = 23/42 (54%), Positives = 31/42 (73%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT +AIAG D+ +VA+DTRLS G++I TR+ K +L Sbjct: 33 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKL 74 Score = 36.2 bits (82), Expect = 0.95 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = +2 Query: 2978 PLSESEAVDLVKDVFASATERDIYT 3052 PLS A+ LVKDVF SA ERD+YT Sbjct: 193 PLSLDRAMRLVKDVFISAAERDVYT 217
>Q9IB83:PSB12_CARAU Proteasome subunit beta type 1-B - Carassius auratus (Goldfish)| Length = 237 Score = 100 bits (249), Expect = 4e-20 Identities = 43/78 (55%), Positives = 59/78 (75%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EG+G VYS+D VGSY+R Y Sbjct: 100 KHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTY 159 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A GS S ++ P+LDNQ+ Sbjct: 160 KAGGSASAMLQPLLDNQI 177 Score = 47.4 bits (111), Expect = 4e-04 Identities = 22/42 (52%), Positives = 31/42 (73%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT +A+AG D+ +VA+DTRLS GY+I +R+ K +L Sbjct: 29 YAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKL 70 Score = 40.4 bits (93), Expect = 0.050 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = +2 Query: 2978 PLSESEAVDLVKDVFASATERDIYT 3052 PLS+ +AV LVKDVF SA ERD+YT Sbjct: 189 PLSQEKAVQLVKDVFISAAERDVYT 213
>Q9IB84:PSB11_CARAU Proteasome subunit beta type 1-A - Carassius auratus (Goldfish)| Length = 238 Score = 100 bits (249), Expect = 4e-20 Identities = 43/78 (55%), Positives = 59/78 (75%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H +NK M+ A+A +LS LY +RFFPYY +N++GGLD EG+G VYS+D VGSY+R Y Sbjct: 101 KHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTY 160 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A GS S ++ P+LDNQ+ Sbjct: 161 KAGGSASAMLQPLLDNQI 178 Score = 47.4 bits (111), Expect = 4e-04 Identities = 22/42 (52%), Positives = 31/42 (73%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT +A+AG D+ +VA+DTRLS GY+I +R+ K +L Sbjct: 30 YAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKL 71 Score = 40.4 bits (93), Expect = 0.050 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = +2 Query: 2978 PLSESEAVDLVKDVFASATERDIYT 3052 PLS+ +AV LVKDVF SA ERD+YT Sbjct: 190 PLSQEKAVQLVKDVFISAAERDVYT 214
>P18421:PSB1_RAT Proteasome subunit beta type 1 precursor - Rattus norvegicus (Rat)| Length = 240 Score = 97.8 bits (242), Expect = 3e-19 Identities = 42/78 (53%), Positives = 58/78 (74%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H +NK M+ A+A +LS LY +RFFPYY +N++ GLD EGKG VYS+D VGSY+R + Sbjct: 103 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSF 162 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A GS S ++ P+LDNQ+ Sbjct: 163 KAGGSASAMLQPLLDNQV 180 Score = 48.1 bits (113), Expect = 2e-04 Identities = 23/42 (54%), Positives = 31/42 (73%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT +AIAG D+ +VA+DTRLS G++I TR+ K +L Sbjct: 32 YAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKL 73 Score = 35.0 bits (79), Expect = 2.1 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = +2 Query: 2978 PLSESEAVDLVKDVFASATERDIYT 3052 PL+ A+ LVKDVF SA ERD+YT Sbjct: 192 PLTLDRAMRLVKDVFISAAERDVYT 216
>P40304:PSB1_DROME Proteasome subunit beta type 1 precursor - Drosophila melanogaster| (Fruit fly) Length = 235 Score = 94.0 bits (232), Expect = 4e-18 Identities = 41/78 (52%), Positives = 56/78 (71%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGY 2699 +H H + M+ A+AQ+LS +Y +RFFPYY N+L G+D+EGKG VYSYD +G E+ Y Sbjct: 96 EHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHCEKATY 155 Query: 2700 SAQGSGSTLIMPVLDNQL 2753 A G+ TL+ PVLDNQ+ Sbjct: 156 RAGGTAGTLLQPVLDNQI 173 Score = 57.0 bits (136), Expect = 5e-07 Identities = 27/42 (64%), Positives = 34/42 (80%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 YE+NGG+ VAIAG D+ V+AADTRLS GYNI +R SK+ +L Sbjct: 25 YESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKL 66
>P34286:PSB1_CAEEL Proteasome subunit beta type 1 - Caenorhabditis elegans| Length = 258 Score = 84.3 bits (207), Expect = 3e-15 Identities = 38/71 (53%), Positives = 48/71 (67%) Frame = +3 Query: 2541 MSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSAQGSGS 2720 MS A+LLS LYY+RFFPYY +L G+D GKG V+SYD +G ER GYSA G+ Sbjct: 126 MSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAE 185 Query: 2721 TLIMPVLDNQL 2753 +I+P LD Q+ Sbjct: 186 PMIIPFLDCQI 196 Score = 36.6 bits (83), Expect = 0.73 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVG-YNILTREHSKI 244 Y GG+ AI+G ++ +VA+DTR++ NILTR+ KI Sbjct: 47 YSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKI 86
>P23724:PSB1_YEAST Proteasome component C5 - Saccharomyces cerevisiae (Baker's yeast)| Length = 241 Score = 84.0 bits (206), Expect = 4e-15 Identities = 38/75 (50%), Positives = 54/75 (72%) Frame = +3 Query: 2529 HNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSAQ 2708 ++K++S + A+ + + LY KRFFPYY ++ GLD +GKG VYS+D VGSYER A Sbjct: 99 NDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAG 158 Query: 2709 GSGSTLIMPVLDNQL 2753 G+ ++LIMP LDNQ+ Sbjct: 159 GAAASLIMPFLDNQV 173 Score = 39.3 bits (90), Expect = 0.11 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKI 244 Y +NGGT + IAG D+ V+A DTR Y+I +R K+ Sbjct: 24 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKV 62
>Q9UQY2:PSB1_SCHPO Probable proteasome subunit beta type 1 - Schizosaccharomyces pombe| (Fission yeast) Length = 225 Score = 81.6 bits (200), Expect = 2e-14 Identities = 37/75 (49%), Positives = 49/75 (65%) Frame = +3 Query: 2529 HNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSAQ 2708 H ++MS + A ++ LY KRFFPYY + + G+D EGKG +YS+D VGSYER A Sbjct: 83 HERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAG 142 Query: 2709 GSGSTLIMPVLDNQL 2753 GS + I P LDNQ+ Sbjct: 143 GSAANFITPFLDNQV 157 Score = 43.1 bits (100), Expect = 0.008 Identities = 21/42 (50%), Positives = 27/42 (64%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKICEL 253 Y NGGT VAIAG + ++A DTR GYNI TR ++ E+ Sbjct: 9 YVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEV 50
>Q9U794:PSB1_TRYBB Proteasome subunit beta type 1 - Trypanosoma brucei brucei| Length = 258 Score = 72.8 bits (177), Expect = 9e-12 Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 3/77 (3%) Frame = +3 Query: 2523 HQHN---KRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERT 2693 +Q+N K S A+A+L S LY +RFFPYY FN++ G+D +G G YSYD VGS E Sbjct: 119 YQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKGAGVCYSYDPVGSTEPF 178 Query: 2694 GYSAQGSGSTLIMPVLD 2744 Y GS S+ + P+LD Sbjct: 179 RYGTCGSASSFVEPLLD 195 Score = 40.8 bits (94), Expect = 0.038 Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Frame = +2 Query: 128 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTR-EHSKICEL 253 Y +NGGT AIAG++Y V+ ADTRL+ + I TR + SK+ +L Sbjct: 48 YTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKL 90
>O50110:PSMB_PYRHO Proteasome subunit beta precursor - Pyrococcus horikoshii| Length = 207 Score = 56.6 bits (135), Expect = 7e-07 Identities = 30/77 (38%), Positives = 44/77 (57%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSA 2705 Q KRMS A+A LL+N + ++FPY A+ ++GG D + K +YS D VG Y+ Sbjct: 79 QSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVGGITEDKYAT 136 Query: 2706 QGSGSTLIMPVLDNQLK 2756 GSG +LD++ K Sbjct: 137 AGSGMEFAYSILDSEYK 153
>Q9V0N9:PSMB_PYRAB Proteasome subunit beta precursor - Pyrococcus abyssi| Length = 207 Score = 52.8 bits (125), Expect = 1e-05 Identities = 30/77 (38%), Positives = 42/77 (54%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSA 2705 Q KRMS A+A LL+N L R PY A+ ++GG D + + +YS D +G Y A Sbjct: 79 QSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGGITEDKYVA 136 Query: 2706 QGSGSTLIMPVLDNQLK 2756 GSG VLD++ + Sbjct: 137 AGSGMEFAYSVLDSEYR 153
>Q8U125:PSMB_PYRFU Proteasome subunit beta precursor - Pyrococcus furiosus| Length = 206 Score = 51.2 bits (121), Expect = 3e-05 Identities = 26/74 (35%), Positives = 42/74 (56%) Frame = +3 Query: 2535 KRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSAQGS 2714 K MS A+A LL+N L ++FPY + ++GG D + + ++S D VG Y+A GS Sbjct: 82 KEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVGGITEDNYAAAGS 139 Query: 2715 GSTLIMPVLDNQLK 2756 G +LD++ + Sbjct: 140 GMEFAYSILDSEYR 153
>Q9P992:PSMB_METTE Proteasome subunit beta precursor - Methanosarcina thermophila| Length = 210 Score = 50.8 bits (120), Expect = 4e-05 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAV-GSYERTGYS 2702 + ++ M+ + L+SN L R++P ++GG+D G G +YS DA+ GS E T S Sbjct: 78 RRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRIS 136 Query: 2703 AQGSGSTLIMPVLDNQLK 2756 A GSGS + VL++Q + Sbjct: 137 ATGSGSPMAYGVLEDQYR 154
>Q9P996:PSMB_ARCFU Proteasome subunit beta precursor - Archaeoglobus fulgidus| Length = 213 Score = 48.9 bits (115), Expect = 1e-04 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAV-GSYERTGYS 2702 + ++ + A+A L SN L R+FPY ++GG+DSEGK +YS D + G+ E Sbjct: 80 RRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKS-IYSIDPIGGAIEEKDIV 138 Query: 2703 AQGSGSTLIMPVLDNQ 2750 A GSGS VL+++ Sbjct: 139 ATGSGSLTAYGVLEDR 154
>P28061:PSMB_THEAC Proteasome subunit beta precursor - Thermoplasma acidophilum| Length = 211 Score = 45.8 bits (107), Expect = 0.001 Identities = 27/75 (36%), Positives = 40/75 (53%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSA 2705 Q M A+A LLSN L ++ PY ++GG+D+ V+S DA G Y++ Sbjct: 77 QRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--VFSIDAAGGSVEDIYAS 134 Query: 2706 QGSGSTLIMPVLDNQ 2750 GSGS + VL++Q Sbjct: 135 TGSGSPFVYGVLESQ 149
>O27270:PSMB_METTH Proteasome subunit beta precursor - Methanobacterium| thermoautotrophicum Length = 210 Score = 45.1 bits (105), Expect = 0.002 Identities = 24/75 (32%), Positives = 43/75 (57%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSA 2705 ++++++S A A L +N L+ RF+P+ +LGG+D G +YS D G + + Sbjct: 78 RNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVS 136 Query: 2706 QGSGSTLIMPVLDNQ 2750 GSGS + VL+++ Sbjct: 137 TGSGSPVAYGVLEDR 151
>Q9UXF3:PSMB_SULSO Proteasome subunit beta precursor - Sulfolobus solfataricus| Length = 208 Score = 42.0 bits (97), Expect = 0.017 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = +3 Query: 2541 MSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYERTGYSAQGSGS 2720 +S +A L+N L ++FPY ++GG D + + +++ D +G Y A GSGS Sbjct: 88 ISIKGIATRLANVLSATKYFPYIVQILIGGYDDQPR--LFNLDYLGDITEENYVATGSGS 145 Query: 2721 TLIMPVLDNQ 2750 + M VL+++ Sbjct: 146 PVAMGVLEDE 155
>Q9Y7T8:PSB3_SCHPO Probable proteasome subunit beta type 3 - Schizosaccharomyces pombe| (Fission yeast) Length = 204 Score = 40.8 bits (94), Expect = 0.038 Identities = 16/51 (31%), Positives = 32/51 (62%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVG 2678 + +++ A L+S+TLY KRF PY++F V+ G+ ++ + +D++G Sbjct: 77 REERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIG 127 Score = 35.8 bits (81), Expect = 1.2 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +2 Query: 125 VYENNGGTCVAIAGADYCVVAADTRLSVGYNILTREHSKI 244 + E NGG+CVA+AG + +A+D RL V LT K+ Sbjct: 3 IMEYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKV 42
>Q9N9W8:PSB3_GIALA Proteasome subunit beta type 3 - Giardia lamblia (Giardia| intestinalis) Length = 207 Score = 40.8 bits (94), Expect = 0.038 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYER-TGYS 2702 Q ++ + A A+++S+ LY RF PY+ ++ G +++GK + + D +G + T + Sbjct: 79 QEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQ 138 Query: 2703 AQGSGSTLIMPVLDNQLK 2756 G+ S ++ + + +K Sbjct: 139 IAGTASDFLLGLCETHVK 156
>Q58634:PSMB_METJA Proteasome subunit beta precursor - Methanococcus jannaschii| Length = 224 Score = 40.4 bits (93), Expect = 0.050 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +3 Query: 2553 AMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSY-ERTGYSAQGSGSTLI 2729 A A LLSN L+ R FP+ ++GG D ++S D +G E ++A GSGS + Sbjct: 84 ACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIA 143 Query: 2730 MPVLD 2744 VL+ Sbjct: 144 YGVLE 148
>O65084:PSB3_PICMA Proteasome subunit beta type 3 - Picea mariana (Black spruce)| Length = 204 Score = 38.1 bits (87), Expect = 0.25 Identities = 19/56 (33%), Positives = 30/56 (53%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYE 2687 Q + + M A L+S LY KRF PY+ V+ GL + K + + D++G+ E Sbjct: 75 QLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130
>Q9LST7:PSB3_ORYSJ Proteasome subunit beta type 3 - Oryza sativa subsp. japonica (Rice)| Length = 204 Score = 36.2 bits (82), Expect = 0.95 Identities = 18/56 (32%), Positives = 29/56 (51%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYE 2687 Q + + M A L+S LY KRF PY+ V+ GL + + + + D +G+ E Sbjct: 75 QLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130
>Q23237:PSB3_CAEEL Proteasome subunit beta type 3 - Caenorhabditis elegans| Length = 204 Score = 36.2 bits (82), Expect = 0.95 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Frame = +3 Query: 2526 QHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYER-TGYS 2702 + N+ + +++++SN Y RF Y+ ++ GLD K + D +G + Sbjct: 77 RENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFV 136 Query: 2703 AQGSGSTLIMPVLDN 2747 A G+G ++ V +N Sbjct: 137 AVGTGQEYLLGVCEN 151
>Q9XI05:PSB3A_ARATH Proteasome subunit beta type 3-A - Arabidopsis thaliana (Mouse-ear| cress) Length = 204 Score = 36.2 bits (82), Expect = 0.95 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = +3 Query: 2520 QHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVYSYDAVGSYE 2687 Q + + M A L+S LY KRF PY V+ GL + K + + D++G+ E Sbjct: 75 QLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130
>P28986:VGLC_HHV1K Glycoprotein C precursor - Human herpesvirus 1 (strain KOS) (HHV-1)| (Human herpes simplex virus 1) Length = 511 Score = 35.8 bits (81), Expect = 1.2 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = -1 Query: 480 HTAEKPMNVEPFSPNS--IRDLQTPNPNQI--NKARL*NPASPPRYPNPYHTTEPHGLPA 313 + +E P + P S S + TPNPN + NK PASPP P P T+ P P Sbjct: 42 NASEAPTSGSPGSAASPEVTPTSTPNPNNVTQNKTTPTEPASPPTTPKP--TSTPKSPPT 99 Query: 312 DKP*P 298 P P Sbjct: 100 STPDP 104
>P10228:VGLC_HHV11 Glycoprotein C precursor - Human herpesvirus 1 (strain 17) (HHV-1)| (Human herpes simplex virus 1) Length = 511 Score = 35.8 bits (81), Expect = 1.2 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = -1 Query: 480 HTAEKPMNVEPFSPNS--IRDLQTPNPNQI--NKARL*NPASPPRYPNPYHTTEPHGLPA 313 + +E P + P S S + TPNPN + NK PASPP P P T+ P P Sbjct: 42 NASEAPTSGSPGSAASPEVTPTSTPNPNNVTQNKTTPTEPASPPTTPKP--TSTPKSPPT 99 Query: 312 DKP*P 298 P P Sbjct: 100 STPDP 104
>P25451:PSB3_YEAST Proteasome component PUP3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 205 Score = 35.0 bits (79), Expect = 2.1 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Frame = +3 Query: 2562 QLLSNTLYYKRFFPYYAFNVLGGLDSE-GKGCVYSYDAVG 2678 QL+S++LY +RF PY+ V+ G++S+ GK + +D +G Sbjct: 89 QLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIG 128
>Q6VGS5:DAPLE_MOUSE Protein Daple - Mus musculus (Mouse)| Length = 2009 Score = 34.3 bits (77), Expect = 3.6 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Frame = -1 Query: 543 RNRQIG----IKL*RYRKHAGTTRVH--TAEKPMNVEPFSPNSIRDLQTPNPNQINKARL 382 +N IG +KL + +K R+ T P +EP P S P+P+Q +++ Sbjct: 1393 KNHWIGAKALVKLIKPKKEGSRERLKSTTDSPPWQLEPSDPAS------PSPSQALRSQT 1446 Query: 381 *NPASPPRYPNPYHTTEPHGLPADK 307 NP +PP PN + H P K Sbjct: 1447 ENPDNPPSGPNCVEERDTHNGPVGK 1471
>Q5GWQ9:RF1_XANOR Peptide chain release factor 1 - Xanthomonas oryzae pv. oryzae| Length = 361 Score = 33.5 bits (75), Expect = 6.1 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Frame = -3 Query: 385 ALKSGLSTKVSKSLSHHRATRPPSRQTLAPERADRGARFRRGNLQLADLGVLAREDVVSD 206 AL+ K S + T P R+ E A AR + QLA L L D D Sbjct: 51 ALEDEARAKADLSAAEAMRTDPEMRELAEEEIAAAQARLEELDTQLASL--LVPRDPRDD 108 Query: 205 GE------AGVGGDHAVVRAGD 158 G AG GGD A + AGD Sbjct: 109 GNLFLEVRAGTGGDEAAIFAGD 130
>Q2NZW2:RF1_XANOM Peptide chain release factor 1 - Xanthomonas oryzae pv. oryzae| (strain MAFF 311018) Length = 361 Score = 33.5 bits (75), Expect = 6.1 Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Frame = -3 Query: 385 ALKSGLSTKVSKSLSHHRATRPPSRQTLAPERADRGARFRRGNLQLADLGVLAREDVVSD 206 AL+ K S + T P R+ E A AR + QLA L L D D Sbjct: 51 ALEDEARAKADLSAAEAMRTDPEMRELAEEEIAAAQARLEELDTQLASL--LVPRDPRDD 108 Query: 205 GE------AGVGGDHAVVRAGD 158 G AG GGD A + AGD Sbjct: 109 GNLFLEVRAGTGGDEAAIFAGD 130
>P38624:PSB6_YEAST Proteasome component PRE3 precursor - Saccharomyces cerevisiae| (Baker's yeast) Length = 215 Score = 33.5 bits (75), Expect = 6.1 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +3 Query: 2619 VLGGLDSEGKGCVYSYDAVGSYERTGYSAQGSGSTLIMPVLDNQLK 2756 ++ G D + KG VY+ GS + Y+ GSGST I D + Sbjct: 117 IVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR 162
>P40112:PSB3_RAT Proteasome subunit beta type 3 - Rattus norvegicus (Rat)| Length = 205 Score = 33.5 bits (75), Expect = 6.1 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 2556 MAQLLSNTLYYKRFFPYYAFNVLGGLDSEG-KGCVYSYDAVG 2678 + +++N LY KRF PYY V+ GLD + K + S D +G Sbjct: 87 LMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
>Q9R1P1:PSB3_MOUSE Proteasome subunit beta type 3 - Mus musculus (Mouse)| Length = 205 Score = 33.5 bits (75), Expect = 6.1 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 2556 MAQLLSNTLYYKRFFPYYAFNVLGGLDSEG-KGCVYSYDAVG 2678 + +++N LY KRF PYY V+ GLD + K + S D +G Sbjct: 87 LMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
>P49720:PSB3_HUMAN Proteasome subunit beta type 3 - Homo sapiens (Human)| Length = 205 Score = 33.5 bits (75), Expect = 6.1 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 2556 MAQLLSNTLYYKRFFPYYAFNVLGGLDSEG-KGCVYSYDAVG 2678 + +++N LY KRF PYY V+ GLD + K + S D +G Sbjct: 87 LMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
>P33672:PSB3_BOVIN Proteasome subunit beta type 3 - Bos taurus (Bovine)| Length = 205 Score = 33.5 bits (75), Expect = 6.1 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 2556 MAQLLSNTLYYKRFFPYYAFNVLGGLDSEG-KGCVYSYDAVG 2678 + +++N LY KRF PYY V+ GLD + K + S D +G Sbjct: 87 LMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIG 128
>Q9ER80:RTP4_MOUSE Receptor-transporting protein 4 - Mus musculus (Mouse)| Length = 249 Score = 33.1 bits (74), Expect = 8.0 Identities = 25/96 (26%), Positives = 34/96 (35%) Frame = -1 Query: 540 NRQIGIKL*RYRKHAGTTRVHTAEKPMNVEPFSPNSIRDLQTPNPNQINKARL*NPASPP 361 N + L RY H A V P+ R+ + + N + L + PP Sbjct: 118 NNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPP 177 Query: 360 RYPNPYHTTEPHGLPADKP*PPSGQIEARDFGGGTY 253 R P+P P K PP Q DFG T+ Sbjct: 178 RSPSPL----PKSSSPSKSCPPPPQTRNTDFGNKTF 209 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 571,515,317 Number of extensions: 12233116 Number of successful extensions: 29927 Number of sequences better than 10.0: 41 Number of HSP's gapped: 29864 Number of HSP's successfully gapped: 71 Length of query: 1131 Length of database: 100,686,439 Length adjustment: 124 Effective length of query: 1007 Effective length of database: 66,673,859 Effective search space: 67140576013 Effective search space used: 67140576013 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
