| Clone Name | FLbaf116c19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT834003.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA006J03, full insert sequence Length = 747 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Plus Query: 233 cggcaggaggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctctaggcc 292 ||||||||||||||||||||||||||| ||| || | || | |||||||||||| |||| Sbjct: 244 cggcaggaggtacatcagctacgacgccctgaggagcgacgtggtgccgtgctcgaggca 303 Query: 293 gggggtgccatactacaactgccgggtcagcaccaccgctaacccctacacccgcggctg 352 ||| || || ||||| |||||| || ||| |||||||| ||||| |||||||| || || Sbjct: 304 gggtgtcccttactataactgcaggatcatgaccaccgccaacccttacacccggggatg 363 Query: 353 cgactccatcacc 365 ||| |||||||| Sbjct: 364 cgagaccatcacc 376
>ref|NM_001074379.1| Oryza sativa (japonica cultivar-group) Os11g0456000 (Os11g0456000) mRNA, complete cds Length = 687 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Plus Query: 233 cggcaggaggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctctaggcc 292 ||||||||||||||||||||||||||| ||| || | || | |||||||||||| |||| Sbjct: 267 cggcaggaggtacatcagctacgacgccctgaggagcgacgtggtgccgtgctcgaggca 326 Query: 293 gggggtgccatactacaactgccgggtcagcaccaccgctaacccctacacccgcggctg 352 ||| || || ||||| |||||| || ||| |||||||| ||||| |||||||| || || Sbjct: 327 gggtgtcccttactataactgcaggatcatgaccaccgccaacccttacacccggggatg 386 Query: 353 cgactccatcacc 365 ||| |||||||| Sbjct: 387 cgagaccatcacc 399
>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041C22, complete sequence Length = 161172 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Minus Query: 233 cggcaggaggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctctaggcc 292 ||||||||||||||||||||||||||| ||| || | || | |||||||||||| |||| Sbjct: 92684 cggcaggaggtacatcagctacgacgccctgaggagcgacgtggtgccgtgctcgaggca 92625 Query: 293 gggggtgccatactacaactgccgggtcagcaccaccgctaacccctacacccgcggctg 352 ||| || || ||||| |||||| || ||| |||||||| ||||| |||||||| || || Sbjct: 92624 gggtgtcccttactataactgcaggatcatgaccaccgccaacccttacacccggggatg 92565 Query: 353 cgactccatcacc 365 ||| |||||||| Sbjct: 92564 cgagaccatcacc 92552
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Minus Query: 233 cggcaggaggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctctaggcc 292 ||||||||||||||||||||||||||| ||| || | || | |||||||||||| |||| Sbjct: 14869618 cggcaggaggtacatcagctacgacgccctgaggagcgacgtggtgccgtgctcgaggca 14869559 Query: 293 gggggtgccatactacaactgccgggtcagcaccaccgctaacccctacacccgcggctg 352 ||| || || ||||| |||||| || ||| |||||||| ||||| |||||||| || || Sbjct: 14869558 gggtgtcccttactataactgcaggatcatgaccaccgccaacccttacacccggggatg 14869499 Query: 353 cgactccatcacc 365 ||| |||||||| Sbjct: 14869498 cgagaccatcacc 14869486 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cggccggctgctgtgggaga 225 |||||||||||||||||||| Sbjct: 24264811 cggccggctgctgtgggaga 24264830
>dbj|AK121173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081K07, full insert sequence Length = 689 Score = 89.7 bits (45), Expect = 1e-14 Identities = 111/133 (83%) Strand = Plus / Plus Query: 233 cggcaggaggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctctaggcc 292 ||||||||||||||||||||||||||| ||| || | || | |||||||||||| |||| Sbjct: 269 cggcaggaggtacatcagctacgacgccctgaggagcgacgtggtgccgtgctcgaggca 328 Query: 293 gggggtgccatactacaactgccgggtcagcaccaccgctaacccctacacccgcggctg 352 ||| || || ||||| |||||| || ||| |||||||| ||||| |||||||| || || Sbjct: 329 gggtgtcccttactataactgcaggatcatgaccaccgccaacccttacacccggggatg 388 Query: 353 cgactccatcacc 365 ||| |||||||| Sbjct: 389 cgagaccatcacc 401
>emb|CT834593.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z82, full insert sequence Length = 708 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 400 aacccctactcccgcggctgctccgccatcacccgctgccgcg 442 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 308 ggtacatcagctacggcgcgctgcgg 333
>emb|CT834592.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA038J21, full insert sequence Length = 700 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 408 aacccctactcccgcggctgctccgccatcacccgctgccgcg 450 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 316 ggtacatcagctacggcgcgctgcgg 341
>emb|CT837750.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA018H24, full insert sequence Length = 761 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 441 aacccctactcccgcggctgctccgccatcacccgctgccgcg 483 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tacatcagctacgacgcgctgcgg 266 ||||||||||||| |||||||||| Sbjct: 351 tacatcagctacggcgcgctgcgg 374
>dbj|AK243417.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100066I03, full insert sequence Length = 896 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 441 aacccctactcccgcggctgctccgccatcacccgctgccgcg 483 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tacatcagctacgacgcgctgcgg 266 ||||||||||||| |||||||||| Sbjct: 351 tacatcagctacggcgcgctgcgg 374
>ref|NM_001054231.1| Oryza sativa (japonica cultivar-group) Os02g0670500 (Os02g0670500) mRNA, complete cds Length = 462 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 415 aacccctactcccgcggctgctccgccatcacccgctgccgcg 457 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tacatcagctacgacgcgctgcgg 266 ||||||||||||| |||||||||| Sbjct: 325 tacatcagctacggcgcgctgcgg 348
>ref|NM_001049547.1| Oryza sativa (japonica cultivar-group) Os01g0357900 (Os01g0357900) mRNA, complete cds Length = 729 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 410 aacccctactcccgcggctgctccgccatcacccgctgccgcg 452 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 318 ggtacatcagctacggcgcgctgcgg 343
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 27247761 aacccctactcccgcggctgctccgccatcacccgctgccgcg 27247803 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tacatcagctacgacgcgctgcgg 266 ||||||||||||| |||||||||| Sbjct: 27247671 tacatcagctacggcgcgctgcgg 27247694
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 14464023 aacccctactcccgcggctgctccgccatcacccgctgccgcg 14463981 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 14464115 ggtacatcagctacggcgcgctgcgg 14464090 Score = 44.1 bits (22), Expect = 0.63 Identities = 31/34 (91%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcaccc 366 ||||||||||||||||||||| | ||||||||| Sbjct: 40916124 aacccctacacccgcggctgctccgccatcaccc 40916091 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Minus Query: 241 ggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctc 286 |||||||||||||||||||| ||||| | | || ||||||||||| Sbjct: 40916216 ggtacatcagctacgacgcgatgcggcgcaacgccgtgccgtgctc 40916171 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 238 ggaggtacatcagctacgacgcgctgcgg 266 |||| ||||||||||||| |||||||||| Sbjct: 14469743 ggagctacatcagctacggcgcgctgcgg 14469715
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 144210 aacccctactcccgcggctgctccgccatcacccgctgccgcg 144252 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tacatcagctacgacgcgctgcgg 266 ||||||||||||| |||||||||| Sbjct: 144120 tacatcagctacggcgcgctgcgg 144143
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 98432 aacccctactcccgcggctgctccgccatcacccgctgccgcg 98474 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tacatcagctacgacgcgctgcgg 266 ||||||||||||| |||||||||| Sbjct: 98342 tacatcagctacggcgcgctgcgg 98365
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 23336 aacccctactcccgcggctgctccgccatcacccgctgccgcg 23294 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 23428 ggtacatcagctacggcgcgctgcgg 23403 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 238 ggaggtacatcagctacgacgcgctgcgg 266 |||| ||||||||||||| |||||||||| Sbjct: 29056 ggagctacatcagctacggcgcgctgcgg 29028
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 125420 aacccctactcccgcggctgctccgccatcacccgctgccgcg 125378 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Minus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 125512 ggtacatcagctacggcgcgctgcgg 125487 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 238 ggaggtacatcagctacgacgcgctgcgg 266 |||| ||||||||||||| |||||||||| Sbjct: 131140 ggagctacatcagctacggcgcgctgcgg 131112
>dbj|AK067878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123C07, full insert sequence Length = 730 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcg 375 ||||||||| ||||||||||| | |||||||||||||||||| Sbjct: 411 aacccctactcccgcggctgctccgccatcacccgctgccgcg 453 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 241 ggtacatcagctacgacgcgctgcgg 266 ||||||||||||||| |||||||||| Sbjct: 319 ggtacatcagctacggcgcgctgcgg 344
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcgac 377 ||||||||||||||||||||| | ||||||||| ||||||||| Sbjct: 75336 aacccctacacccgcggctgctccgccatcacccagtgccgcgac 75292
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Plus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcgac 377 ||||||||||||||||||||| | ||||||||| ||||||||| Sbjct: 102389 aacccctacacccgcggctgctccgccatcacccagtgccgcgac 102433
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcacccgctgccgcgac 377 ||||||||||||||||||||| | ||||||||| ||||||||| Sbjct: 12833883 aacccctacacccgcggctgctccgccatcacccagtgccgcgac 12833839
>gb|DQ245539.1| Zea mays clone 16838 mRNA sequence Length = 788 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 241 ggtacatcagctacgacgcgctgcgggggga 271 ||||||||||||||| |||||||||| |||| Sbjct: 363 ggtacatcagctacggcgcgctgcggcggga 393
>gb|DQ244782.1| Zea mays clone 10646 mRNA sequence Length = 728 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Plus Query: 241 ggtacatcagctacgacgcgctgcgggggga 271 ||||||||||||||| |||||||||| |||| Sbjct: 366 ggtacatcagctacggcgcgctgcggcggga 396
>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506E04 Length = 139934 Score = 44.1 bits (22), Expect = 0.63 Identities = 31/34 (91%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcaccc 366 ||||||||||||||||||||| | ||||||||| Sbjct: 128230 aacccctacacccgcggctgctccgccatcaccc 128197 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Minus Query: 241 ggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctc 286 |||||||||||||||||||| ||||| | | || ||||||||||| Sbjct: 128322 ggtacatcagctacgacgcgatgcggcgcaacgccgtgccgtgctc 128277
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 44.1 bits (22), Expect = 0.63 Identities = 31/34 (91%) Strand = Plus / Minus Query: 333 aacccctacacccgcggctgcgactccatcaccc 366 ||||||||||||||||||||| | ||||||||| Sbjct: 44549 aacccctacacccgcggctgctccgccatcaccc 44516 Score = 44.1 bits (22), Expect = 0.63 Identities = 40/46 (86%) Strand = Plus / Minus Query: 241 ggtacatcagctacgacgcgctgcggggggatgcggtgccgtgctc 286 |||||||||||||||||||| ||||| | | || ||||||||||| Sbjct: 44641 ggtacatcagctacgacgcgatgcggcgcaacgccgtgccgtgctc 44596
>emb|CT833726.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA060E20, full insert sequence Length = 720 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 238 ggaggtacatcagctacgacgcgctgcgg 266 |||| ||||||||||||| |||||||||| Sbjct: 303 ggagctacatcagctacggcgcgctgcgg 331
>ref|NM_001049548.1| Oryza sativa (japonica cultivar-group) Os01g0358100 (Os01g0358100) mRNA, complete cds Length = 745 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 238 ggaggtacatcagctacgacgcgctgcgg 266 |||| ||||||||||||| |||||||||| Sbjct: 275 ggagctacatcagctacggcgcgctgcgg 303
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtgg 168 ||||||||||||||||||||| Sbjct: 4705674 tggacatggacatggacgtgg 4705694 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ggacatggacatggacgtgg 168 |||||||||||||||||||| Sbjct: 7780259 ggacatggacatggacgtgg 7780240
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtgg 168 ||||||||||||||||||||| Sbjct: 20490811 tggacatggacatggacgtgg 20490831 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 5326353 tggacatggacatggacgtg 5326372
>gb|AC011761.15| Drosophila melanogaster clone BACH50G05, complete sequence Length = 108727 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tggacatggacatggacgtgg 168 ||||||||||||||||||||| Sbjct: 106914 tggacatggacatggacgtgg 106894
>gb|AC012650.9| Drosophila melanogaster clone BACN24N09, complete sequence Length = 74083 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 148 tggacatggacatggacgtgg 168 ||||||||||||||||||||| Sbjct: 8726 tggacatggacatggacgtgg 8706
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187437 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtgg 168 ||||||||||||||||||||| Sbjct: 6299 tggacatggacatggacgtgg 6319
>gb|AC010665.6| Drosophila melanogaster 3L BAC RP98-23H9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156526 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtgg 168 ||||||||||||||||||||| Sbjct: 132456 tggacatggacatggacgtgg 132476
>gb|AC126456.3| Homo sapiens BAC clone RP11-304P11 from 2, complete sequence Length = 117907 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 attgcatcaataatataatgt 537 ||||||||||||||||||||| Sbjct: 103125 attgcatcaataatataatgt 103145
>dbj|AK105209.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A08, full insert sequence Length = 745 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 238 ggaggtacatcagctacgacgcgctgcgg 266 |||| ||||||||||||| |||||||||| Sbjct: 275 ggagctacatcagctacggcgcgctgcgg 303
>emb|CT834290.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029D06, full insert sequence Length = 583 Score = 40.1 bits (20), Expect = 9.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 328 ccgctaacccctacacccgcggctgcgactccatcacccgctgccgcg 375 |||| ||||||||| |||||||||| | ||||||||||||||||| Sbjct: 461 ccgccaacccctaccaccgcggctgctcccgcatcacccgctgccgcg 508
>gb|BT029095.1| Drosophila melanogaster IP13321 full insert cDNA Length = 2047 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 1756 tggacatggacatggacgtg 1775
>ref|NM_001073489.1| Oryza sativa (japonica cultivar-group) Os12g0541700 (Os12g0541700) mRNA, complete cds Length = 897 Score = 40.1 bits (20), Expect = 9.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 328 ccgctaacccctacacccgcggctgcgactccatcacccgctgccgcg 375 |||| ||||||||| |||||||||| | ||||||||||||||||| Sbjct: 497 ccgccaacccctaccaccgcggctgctcccgcatcacccgctgccgcg 544
>gb|AC189734.2| Trichinella spiralis BAC clone TS195-20H12 from chromosome unknown, complete sequence Length = 134780 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 630 tattatagaaacttccctgg 649 |||||||||||||||||||| Sbjct: 15685 tattatagaaacttccctgg 15666
>gb|AC189317.1| Brassica rapa subsp. pekinensis clone KBrB036B21, complete sequence Length = 110411 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 caggaggtacatcagctacg 255 |||||||||||||||||||| Sbjct: 44415 caggaggtacatcagctacg 44434
>emb|AL929603.2|TBBCHR1A1 Trypanosoma brucei chromosome 1, complete sequence Length = 1064672 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 acccctacacccgcggctgc 353 |||||||||||||||||||| Sbjct: 359123 acccctacacccgcggctgc 359104
>emb|CT030725.15| Mouse DNA sequence from clone RP24-281O2 on chromosome 16, complete sequence Length = 115213 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ggtggaggcagcgcagatgg 189 |||||||||||||||||||| Sbjct: 61250 ggtggaggcagcgcagatgg 61231
>gb|AY242074.1| Sphingomonas elodea gellan polysaccharide biosynthesis (gelF), GelD (gelD), GelC (gelC), GelE (gelE), putative membrane protein, and putative exported protein genes, complete cds Length = 6574 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ggtggaggcagcgcagatgg 189 |||||||||||||||||||| Sbjct: 4207 ggtggaggcagcgcagatgg 4188
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aactgccgggtcagcaccac 328 |||||||||||||||||||| Sbjct: 4037906 aactgccgggtcagcaccac 4037925
>gb|BT017785.1| Zea mays clone EL01N0503H11.c mRNA sequence Length = 1086 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ggagaggaggccatggcgcc 131 |||||||||||||||||||| Sbjct: 89 ggagaggaggccatggcgcc 108
>gb|AC116473.13| Mus musculus chromosome 8, clone RP23-385E22, complete sequence Length = 186155 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 tggacatggacgtgggggtggagg 177 |||||||||| ||||||||||||| Sbjct: 81581 tggacatggatgtgggggtggagg 81558
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cggccggctgctgtgggaga 225 |||||||||||||||||||| Sbjct: 65920 cggccggctgctgtgggaga 65939
>ref|NM_131995.1| Drosophila melanogaster CG15784-RA (CG15784), mRNA Length = 1782 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 1641 tggacatggacatggacgtg 1660
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cggccggctgctgtgggaga 225 |||||||||||||||||||| Sbjct: 144178 cggccggctgctgtgggaga 144159
>gb|AY217008.1| Sphingomonas elodea strain ATCC 31461 gellan polysaccharide biosynthesis gene cluster, complete sequence Length = 31500 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 ggtggaggcagcgcagatgg 189 |||||||||||||||||||| Sbjct: 17358 ggtggaggcagcgcagatgg 17339
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 197 ggcggcgcacggccggctgctgtgggag 224 |||||||| |||| |||||||||||||| Sbjct: 2000993 ggcggcgcccggcgggctgctgtgggag 2000966
>gb|AC023684.4| Drosophila melanogaster X BAC RP98-7P13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178077 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 157106 tggacatggacatggacgtg 157087
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 ctgccgggtcagcaccaccg 330 |||||||||||||||||||| Sbjct: 1060931 ctgccgggtcagcaccaccg 1060950
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cggctccggcaatgcctcca 47 |||||||||||||||||||| Sbjct: 341698 cggctccggcaatgcctcca 341679
>gb|AC008646.7| Homo sapiens chromosome 5 clone CTB-182O9, complete sequence Length = 174928 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 497 ggagtattttgctggatcatattg 520 |||||| ||||||||||||||||| Sbjct: 130972 ggagtaatttgctggatcatattg 130949
>gb|AC104604.7| Drosophila melanogaster X BAC RP98-18K5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167902 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 63868 tggacatggacatggacgtg 63849
>gb|AC010042.8| Drosophila melanogaster 3L BAC RP98-5K6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 157225 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ggacatggacatggacgtgg 168 |||||||||||||||||||| Sbjct: 19322 ggacatggacatggacgtgg 19341
>emb|AJ246963.1|ARA246963 Ascochyta rabiei microsatellite DNA, clone ArH01T Length = 389 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ggacatggacatggacgtgg 168 |||||||||||||||||||| Sbjct: 11 ggacatggacatggacgtgg 30
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 40.1 bits (20), Expect = 9.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 328 ccgctaacccctacacccgcggctgcgactccatcacccgctgccgcg 375 |||| ||||||||| |||||||||| | ||||||||||||||||| Sbjct: 21725994 ccgccaacccctaccaccgcggctgctcccgcatcacccgctgccgcg 21726041
>gb|AC091225.2| Drosophila melanogaster 3L BAC RP98-34B24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174774 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ggacatggacatggacgtgg 168 |||||||||||||||||||| Sbjct: 29424 ggacatggacatggacgtgg 29405
>emb|AL450326.30| Human DNA sequence from clone RP11-517P14 on chromosome 10 Contains the 5' end of the HNRPF gene for heterogeneous nuclear ribonucleoprotein F, part of a novel gene, the ZNF239 gene for zinc finger protein 239 (MOK2, HOK-2), two sinc finger protein pseudogenes and seven CpG islands, complete sequence Length = 197786 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ggacatggacatggacgtgg 168 |||||||||||||||||||| Sbjct: 191880 ggacatggacatggacgtgg 191861
>emb|AL365402.17| Human DNA sequence from clone RP11-445K1 on chromosome 1q31.1-31.3 Contains the 3' end of the gene for DBCCR1-like (DBCCR1L), complete sequence Length = 190163 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 tgtattatagaaacttccct 647 |||||||||||||||||||| Sbjct: 26400 tgtattatagaaacttccct 26419
>gb|AC155824.3| Mus musculus BAC clone RP23-136L1 from chromosome 8, complete sequence Length = 220437 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 tggacatggacgtgggggtggagg 177 |||||||||| ||||||||||||| Sbjct: 37777 tggacatggatgtgggggtggagg 37800
>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1, complete sequence Length = 159780 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 99552 tggacatggacatggacgtg 99571
>gb|AC084482.1|CBRG03B17 Caenorhabditis briggsae cosmid G03B17, complete sequence Length = 25417 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 attccagctccaaggatatt 585 |||||||||||||||||||| Sbjct: 3626 attccagctccaaggatatt 3607
>dbj|AK103420.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128J23, full insert sequence Length = 898 Score = 40.1 bits (20), Expect = 9.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 328 ccgctaacccctacacccgcggctgcgactccatcacccgctgccgcg 375 |||| ||||||||| |||||||||| | ||||||||||||||||| Sbjct: 498 ccgccaacccctaccaccgcggctgctcccgcatcacccgctgccgcg 545
>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1, complete sequence Length = 183058 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tggacatggacatggacgtg 167 |||||||||||||||||||| Sbjct: 146099 tggacatggacatggacgtg 146118
>dbj|AP006409.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT25E08, TM0299, complete sequence Length = 109465 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 596 gttaagaacctggatcatatggagtgtt 623 ||||| ||||||||| |||||||||||| Sbjct: 33657 gttaataacctggatgatatggagtgtt 33630
>emb|AJ000907.1|LEJ000907 Lycopersicon esculentum cv Red River RAPD band 16 Length = 1556 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 tcatattgcatcaataatat 532 |||||||||||||||||||| Sbjct: 766 tcatattgcatcaataatat 785
>emb|AL161664.8|CNS01RH8 Human chromosome 14 DNA sequence BAC C-2594L5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171355 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 attccagctccaaggatatt 585 |||||||||||||||||||| Sbjct: 63791 attccagctccaaggatatt 63772
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 40.1 bits (20), Expect = 9.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 328 ccgctaacccctacacccgcggctgcgactccatcacccgctgccgcg 375 |||| ||||||||| |||||||||| | ||||||||||||||||| Sbjct: 86557 ccgccaacccctaccaccgcggctgctcccgcatcacccgctgccgcg 86510 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 88,947,296 Number of extensions: 5233994 Number of successful extensions: 100837 Number of sequences better than 10.0: 71 Number of HSP's gapped: 100837 Number of HSP's successfully gapped: 94 Length of query: 669 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 647 Effective length of database: 18,508,616,841 Effective search space: 11975075096127 Effective search space used: 11975075096127 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)