ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf112o19 |
|---|---|
| Clone Library Name | barley_pub |
>Q9UK45:LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 - Homo sapiens (Human)| Length = 103 Score = 115 bits (287), Expect = 2e-25 Identities = 52/90 (57%), Positives = 71/90 (78%) Frame = +1 Query: 118 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAK 297 +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD IE+ R+ DD KL+ Sbjct: 8 KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67 Query: 298 TRQLGLIVCRGTAVMLVSPTEGTEEIKNPF 387 TRQLGL+VCRGT+V+L+ P +G E I NPF Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPF 97
>Q9CQQ8:LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 - Mus musculus (Mouse)| Length = 103 Score = 114 bits (284), Expect = 4e-25 Identities = 51/90 (56%), Positives = 71/90 (78%) Frame = +1 Query: 118 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAK 297 +KE++LDL+K++DK ++VK GGR+ +G LKG+D LLNLVLD +E+ R+ DD KL+ Sbjct: 8 KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67 Query: 298 TRQLGLIVCRGTAVMLVSPTEGTEEIKNPF 387 TRQLGL+VCRGT+V+L+ P +G E I NPF Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPF 97
>P53905:LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 - Saccharomyces cerevisiae| (Baker's yeast) Length = 115 Score = 82.8 bits (203), Expect = 1e-15 Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 3/87 (3%) Frame = +1 Query: 118 RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLK---L 288 ++E +LDLAK+ D ++VKL GG+ V G LKGYDQL+NLVLD+ +E+ DD + Sbjct: 23 KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELI 82 Query: 289 SAKTRQLGLIVCRGTAVMLVSPTEGTE 369 S R+LGL V RGT ++ +S EG++ Sbjct: 83 SKNARKLGLTVIRGTILVSLSSAEGSD 109
>Q9N4G9:RUXG_CAEEL Probable small nuclear ribonucleoprotein G - Caenorhabditis elegans| Length = 77 Score = 60.8 bits (146), Expect = 4e-09 Identities = 27/75 (36%), Positives = 50/75 (66%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 +L K++DK + +KL G R+V+G L+G+D +N+V+DEA+E++++ + LG+ Sbjct: 8 ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKD--------GGSVNLGM 59 Query: 316 IVCRGTAVMLVSPTE 360 V RG +V+++ P E Sbjct: 60 TVIRGNSVVIMEPKE 74
>P62309:RUXG_MOUSE Small nuclear ribonucleoprotein G - Mus musculus (Mouse)| Length = 76 Score = 59.3 bits (142), Expect = 1e-08 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 +L KF+DK + +KL GGR V G L+G+D +NLV+DE +E + S + +G+ Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59 Query: 316 IVCRGTAVMLVSPTE 360 +V RG +++++ E Sbjct: 60 VVIRGNSIIMLEALE 74
>P62308:RUXG_HUMAN Small nuclear ribonucleoprotein G - Homo sapiens (Human)| Length = 76 Score = 59.3 bits (142), Expect = 1e-08 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 +L KF+DK + +KL GGR V G L+G+D +NLV+DE +E + S + +G+ Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59 Query: 316 IVCRGTAVMLVSPTE 360 +V RG +++++ E Sbjct: 60 VVIRGNSIIMLEALE 74
>Q3ZBL0:RUXG_BOVIN Small nuclear ribonucleoprotein G - Bos taurus (Bovine)| Length = 76 Score = 59.3 bits (142), Expect = 1e-08 Identities = 27/75 (36%), Positives = 46/75 (61%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 +L KF+DK + +KL GGR V G L+G+D +NLV+DE +E + S + +G+ Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59 Query: 316 IVCRGTAVMLVSPTE 360 +V RG +++++ E Sbjct: 60 VVIRGNSIIMLEALE 74
>O82221:RUXG_ARATH Probable small nuclear ribonucleoprotein G - Arabidopsis thaliana| (Mouse-ear cress) Length = 80 Score = 58.9 bits (141), Expect = 2e-08 Identities = 30/75 (40%), Positives = 45/75 (60%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 DL K++DK +Q+KL R VTGTL+G+DQ +NLV+D +E KT +G+ Sbjct: 9 DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGND--------KT-DIGM 59 Query: 316 IVCRGTAVMLVSPTE 360 +V RG +++ V E Sbjct: 60 VVIRGNSIVTVEALE 74
>Q9VXE0:RUXG_DROME Probable small nuclear ribonucleoprotein G - Drosophila| melanogaster (Fruit fly) Length = 76 Score = 55.1 bits (131), Expect = 2e-07 Identities = 27/71 (38%), Positives = 46/71 (64%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 ++ K++DK + +KL GGR VTG L+G+D +N+VLD+ +E E D K +G+ Sbjct: 8 EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE---ECKDNTK-----NNIGM 59 Query: 316 IVCRGTAVMLV 348 +V RG ++++V Sbjct: 60 VVIRGNSIVMV 70
>P24715:RUXG_MEDSA Probable small nuclear ribonucleoprotein G - Medicago sativa| (Alfalfa) Length = 81 Score = 53.5 bits (127), Expect = 7e-07 Identities = 25/74 (33%), Positives = 42/74 (56%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 318 L K++DK +Q+ L R + GTL+G+DQ +NLV+D +E + + +G++ Sbjct: 10 LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN---------DIGMV 60 Query: 319 VCRGTAVMLVSPTE 360 V RG +V+ V E Sbjct: 61 VIRGNSVVTVEALE 74
>P40204:RUXG_YEAST Small nuclear ribonucleoprotein G - Saccharomyces cerevisiae| (Baker's yeast) Length = 77 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 +L K++DK + + + G R+V G L+GYD LN+VLD+A+E E DP A QLGL Sbjct: 6 ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGE--DP----ANNHQLGL 59 Query: 316 -IVCRGTAVM 342 V RG +++ Sbjct: 60 QTVIRGNSII 69
>O74966:RUXG_SCHPO Probable small nuclear ribonucleoprotein G - Schizosaccharomyces| pombe (Fission yeast) Length = 77 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/71 (36%), Positives = 45/71 (63%) Frame = +1 Query: 136 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGL 315 DL K++D+ V V+L G R+V G L+GYD LN+VL+++IE K+ + ++G Sbjct: 8 DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE--------EKVDGEKVKIGS 59 Query: 316 IVCRGTAVMLV 348 + RG +V+++ Sbjct: 60 VAIRGNSVIMI 70
>P57743:LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 - Saccharomyces cerevisiae| (Baker's yeast) Length = 89 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%) Frame = +1 Query: 124 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKT 300 ET LDL K +D+ V +KL G R + GTL+ +D N+VL +A+E + ++ +LS Sbjct: 2 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNE-ELSESE 60 Query: 301 RQLGLIVCRGTAVMLVS-PTE 360 R+ ++ RG V L+S P+E Sbjct: 61 RRCEMVFIRGDTVTLISTPSE 81
>O29386:RUXX_ARCFU Putative snRNP Sm-like protein - Archaeoglobus fulgidus| Length = 77 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/69 (42%), Positives = 39/69 (56%) Frame = +1 Query: 163 VQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVM 342 V V+L GGR+ GTL GYD +NLVL +A E + + R++G +V RG V+ Sbjct: 17 VIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE--------VVRKVGSVVIRGDTVV 68 Query: 343 LVSPTEGTE 369 VSP G E Sbjct: 69 FVSPAPGGE 77
>Q9YEQ5:RUXX_AERPE Putative snRNP Sm-like protein - Aeropyrum pernix| Length = 77 Score = 47.0 bits (110), Expect = 6e-05 Identities = 27/76 (35%), Positives = 42/76 (55%) Frame = +1 Query: 127 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQ 306 T+ + +VD V VKL G ++ G LK YDQ LN++L +A E R+ Sbjct: 9 TLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIG---------ETSIRR 59 Query: 307 LGLIVCRGTAVMLVSP 354 LGL + RG +V++++P Sbjct: 60 LGLTLVRGDSVVVITP 75
>Q9Y7M4:LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 -| Schizosaccharomyces pombe (Fission yeast) Length = 93 Score = 45.4 bits (106), Expect = 2e-04 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%) Frame = +1 Query: 133 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEF-----EREQDDPLKLSA 294 LDL + +D+ V VKL G R++ G L YD+ LN+VL +A E + E D L Sbjct: 11 LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70 Query: 295 KTRQLGLIVCRGTAVMLVSP 354 + ++ RG +V+L++P Sbjct: 71 IRKHYEMLFVRGDSVILIAP 90
>Q5RCP3:LSM8_PONPY U6 snRNA-associated Sm-like protein LSm8 - Pongo pygmaeus| (Orangutan) Length = 96 Score = 44.7 bits (104), Expect = 3e-04 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE--FEREQDDPLKLSAKTRQLG 312 L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E F Q + LG Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQ------GVEQVVLG 58 Query: 313 LIVCRGTAVMLV 348 L + RG V ++ Sbjct: 59 LYIVRGDNVAVI 70
>Q6ZWM4:LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 - Mus musculus (Mouse)| Length = 96 Score = 44.7 bits (104), Expect = 3e-04 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE--FEREQDDPLKLSAKTRQLG 312 L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E F Q + LG Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQ------GVEQVVLG 58 Query: 313 LIVCRGTAVMLV 348 L + RG V ++ Sbjct: 59 LYIVRGDNVAVI 70
>O95777:LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 - Homo sapiens (Human)| Length = 96 Score = 44.7 bits (104), Expect = 3e-04 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE--FEREQDDPLKLSAKTRQLG 312 L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E F Q + LG Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQ------GVEQVVLG 58 Query: 313 LIVCRGTAVMLV 348 L + RG V ++ Sbjct: 59 LYIVRGDNVAVI 70
>Q3ZCE0:LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 - Bos taurus (Bovine)| Length = 96 Score = 44.7 bits (104), Expect = 3e-04 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE--FEREQDDPLKLSAKTRQLG 312 L ++++ V V + GR + GTLKG+DQ +NL+LDE+ E F Q + LG Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQ------GVEQVVLG 58 Query: 313 LIVCRGTAVMLV 348 L + RG V ++ Sbjct: 59 LYIVRGDNVAVI 70
>O74483:LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 - Schizosaccharomyces| pombe (Fission yeast) Length = 94 Score = 44.3 bits (103), Expect = 4e-04 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = +1 Query: 133 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLG 312 + LA F+++ VQV GR V G+LKG+D NL+L ++ E D + +T LG Sbjct: 1 MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDM----ETIPLG 56 Query: 313 LIVCRGTAVMLV 348 + + RG V +V Sbjct: 57 VYLLRGENVAMV 68
>O26745:RUXX_METTH Putative snRNP Sm-like protein - Methanobacterium| thermoautotrophicum Length = 81 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 318 L ++ V +KL G R+ G LK +D +NLVL++A E E + TR+LG + Sbjct: 18 LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE--------VTRRLGTV 69 Query: 319 VCRGTAVMLVSP 354 + RG ++ +SP Sbjct: 70 LIRGDNIVYISP 81
>Q8PZZ9:RUXX_METMA Putative snRNP Sm-like protein - Methanosarcina mazei| (Methanosarcina frisia) Length = 72 Score = 43.9 bits (102), Expect = 5e-04 Identities = 34/82 (41%), Positives = 45/82 (54%) Frame = +1 Query: 109 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKL 288 M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E RE + K Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-REGEVVSKF 57 Query: 289 SAKTRQLGLIVCRGTAVMLVSP 354 S+ +V RG V+ VSP Sbjct: 58 SS-------VVIRGDNVVYVSP 72
>P62311:LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 - Mus musculus (Mouse)| Length = 102 Score = 43.5 bits (101), Expect = 7e-04 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%) Frame = +1 Query: 124 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AIEFEREQDDPL 282 E LDL + +D+ + VK+ R++ G L YDQ LN++L + IE + E + + Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 283 KLSAKTRQLGLIVCRGTAVMLVSP 354 S K R + ++ RG V+LV+P Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLVAP 97
>P62310:LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 - Homo sapiens (Human)| Length = 102 Score = 43.5 bits (101), Expect = 7e-04 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%) Frame = +1 Query: 124 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AIEFEREQDDPL 282 E LDL + +D+ + VK+ R++ G L YDQ LN++L + IE + E + + Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 283 KLSAKTRQLGLIVCRGTAVMLVSP 354 S K R + ++ RG V+LV+P Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLVAP 97
>Q32PE9:LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 - Bos taurus (Bovine)| Length = 102 Score = 43.5 bits (101), Expect = 7e-04 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 7/84 (8%) Frame = +1 Query: 124 ETVLDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AIEFEREQDDPL 282 E LDL + +D+ + VK+ R++ G L YDQ LN++L + IE + E + + Sbjct: 15 EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74 Query: 283 KLSAKTRQLGLIVCRGTAVMLVSP 354 S K R + ++ RG V+LV+P Sbjct: 75 YKSTK-RNIPMLFVRGDGVVLVAP 97
>Q8TL47:RUXX_METAC Putative snRNP Sm-like protein - Methanosarcina acetivorans| Length = 72 Score = 42.7 bits (99), Expect = 0.001 Identities = 33/82 (40%), Positives = 45/82 (54%) Frame = +1 Query: 109 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKL 288 M+ R +L+ A +D V V+L G R+ G LKGYD +NLVLD A E R+ + K Sbjct: 1 MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEEL-RDGEVVSKF 57 Query: 289 SAKTRQLGLIVCRGTAVMLVSP 354 S+ +V RG V+ VSP Sbjct: 58 SS-------VVIRGDNVVYVSP 72
>O74016:RUXX_PYRHO Putative snRNP Sm-like protein - Pyrococcus horikoshii| Length = 75 Score = 40.0 bits (92), Expect = 0.007 Identities = 29/70 (41%), Positives = 38/70 (54%) Frame = +1 Query: 151 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRG 330 +DK V V L G + G L GYD LN+VL +A E QD + ++ G IV RG Sbjct: 13 LDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMVQDGEV-----VKKYGKIVIRG 64 Query: 331 TAVMLVSPTE 360 V+ +SPTE Sbjct: 65 DNVLAISPTE 74
>Q8U0P4:RUXX_PYRFU Putative snRNP Sm-like protein - Pyrococcus furiosus| Length = 76 Score = 39.7 bits (91), Expect = 0.010 Identities = 30/72 (41%), Positives = 38/72 (52%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K +DK V V L G + G L GYD LN+VL A E QD + ++ G IV Sbjct: 11 KSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA---ELLQDGEV-----VKKYGKIVI 62 Query: 325 RGTAVMLVSPTE 360 RG V+ +SPTE Sbjct: 63 RGDNVLAISPTE 74
>Q9V0Y8:RUXX_PYRAB Putative snRNP Sm-like protein - Pyrococcus abyssi| Length = 75 Score = 39.7 bits (91), Expect = 0.010 Identities = 29/70 (41%), Positives = 38/70 (54%) Frame = +1 Query: 151 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRG 330 +DK V V L G + G L GYD LN+VL +A E QD + ++ G IV RG Sbjct: 13 LDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEV-----VKRYGKIVIRG 64 Query: 331 TAVMLVSPTE 360 V+ +SPTE Sbjct: 65 DNVLAISPTE 74
>Q5JIE0:RUXX_PYRKO Putative snRNP Sm-like protein - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 76 Score = 39.3 bits (90), Expect = 0.013 Identities = 29/72 (40%), Positives = 38/72 (52%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K +DK V V L G + G L GYD LN+VL +A E QD + ++ G IV Sbjct: 11 KSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA---ELIQDGEV-----VKKYGKIVI 62 Query: 325 RGTAVMLVSPTE 360 RG V+ +SP E Sbjct: 63 RGDNVLALSPVE 74
>P40089:LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 - Saccharomyces cerevisiae| (Baker's yeast) Length = 93 Score = 38.5 bits (88), Expect = 0.022 Identities = 17/70 (24%), Positives = 39/70 (55%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K +++ V + L R+ GTL G+D +N++L++A+E+ + +D + + G ++ Sbjct: 14 KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLL 73 Query: 325 RGTAVMLVSP 354 G + ++ P Sbjct: 74 SGNNIAILVP 83
>P47017:LSM1_YEAST Sm-like protein LSm1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 172 Score = 37.7 bits (86), Expect = 0.037 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 12/102 (11%) Frame = +1 Query: 127 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE---FEREQDDPLKLSAK 297 T + VD+ + V L GR + G L+ +DQ NL+L + +E F E K + + Sbjct: 42 TTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEEN----KYAEE 97 Query: 298 TRQLGLIVCRGTAVMLV---------SPTEGTEEIKNPFQEA 396 R G+ + RG V+++ P E E I PF+EA Sbjct: 98 DR--GIFMIRGENVVMLGEVDIDKEDQPLEAMERI--PFKEA 135
>Q12330:RUXE_YEAST Small nuclear ribonucleoprotein E - Saccharomyces cerevisiae| (Baker's yeast) Length = 94 Score = 37.4 bits (85), Expect = 0.048 Identities = 17/59 (28%), Positives = 33/59 (55%) Frame = +1 Query: 184 GRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLVSPTE 360 G ++ G + G+D+ +N+V+DEA+E D + K LG I+ +G + L++ + Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>P57670:RUXX_THEAC Putative snRNP Sm-like protein - Thermoplasma acidophilum| Length = 83 Score = 37.0 bits (84), Expect = 0.063 Identities = 21/75 (28%), Positives = 38/75 (50%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLI 318 L + + V + + G R+ +G L+GYD +N+VL A E ++ + + Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGV--------YDRV 65 Query: 319 VCRGTAVMLVSPTEG 363 + RG V+ VSP++G Sbjct: 66 LVRGDNVIFVSPSKG 80
>Q8VC85:LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 - Mus musculus (Mouse)| Length = 133 Score = 36.6 bits (83), Expect = 0.083 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQL--G 312 L + +DK V L GR + G L+ DQ NLVL + +E + + K + G Sbjct: 10 LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE-------RIHVGKKYGDIPRG 62 Query: 313 LIVCRGTAVMLVSPTEGTEEIKNPFQEADGEQ 408 + V RG V+L+ + +E P Q+ E+ Sbjct: 63 IFVVRGENVVLLGEIDLEKESDTPLQQVSIEE 94
>O15116:LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 - Homo sapiens (Human)| Length = 133 Score = 36.6 bits (83), Expect = 0.083 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQL--G 312 L + +DK V L GR + G L+ DQ NLVL + +E + + K + G Sbjct: 10 LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE-------RIHVGKKYGDIPRG 62 Query: 313 LIVCRGTAVMLVSPTEGTEEIKNPFQEADGEQ 408 + V RG V+L+ + +E P Q+ E+ Sbjct: 63 IFVVRGENVVLLGEIDLEKESDTPLQQVSIEE 94
>Q5E9Z8:LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 - Bos taurus (Bovine)| Length = 133 Score = 36.6 bits (83), Expect = 0.083 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQL--G 312 L + +DK V L GR + G L+ DQ NLVL + +E + + K + G Sbjct: 10 LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVE-------RIHVGKKYGDIPRG 62 Query: 313 LIVCRGTAVMLVSPTEGTEEIKNPFQEADGEQ 408 + V RG V+L+ + +E P Q+ E+ Sbjct: 63 IFVVRGENVVLLGEIDLEKESDTPLQQVSIEE 94
>Q5R628:LSM5_PONPY U6 snRNA-associated Sm-like protein LSm5 - Pongo pygmaeus| (Orangutan) Length = 91 Score = 36.2 bits (82), Expect = 0.11 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K + + + + +++ GTL G+D +N+VL++ EFE + + +L I+ Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE-----GRRITKLDQILL 74 Query: 325 RGTAV-MLVSPTEGTE 369 G + MLV EG E Sbjct: 75 NGNNITMLVPGGEGPE 90
>P62322:LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 - Mus musculus (Mouse)| Length = 91 Score = 36.2 bits (82), Expect = 0.11 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K + + + + +++ GTL G+D +N+VL++ EFE + + +L I+ Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE-----GRRITKLDQILL 74 Query: 325 RGTAV-MLVSPTEGTE 369 G + MLV EG E Sbjct: 75 NGNNITMLVPGGEGPE 90
>Q9Y4Y9:LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 - Homo sapiens (Human)| Length = 91 Score = 36.2 bits (82), Expect = 0.11 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K + + + + +++ GTL G+D +N+VL++ EFE + + +L I+ Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE-----GRRITKLDQILL 74 Query: 325 RGTAV-MLVSPTEGTE 369 G + MLV EG E Sbjct: 75 NGNNITMLVPGGEGPE 90
>Q2HJH0:LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 - Bos taurus (Bovine)| Length = 91 Score = 36.2 bits (82), Expect = 0.11 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +1 Query: 145 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVC 324 K + + + + +++ GTL G+D +N+VL++ EFE + + +L I+ Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPE-----GRRITKLDQILL 74 Query: 325 RGTAV-MLVSPTEGTE 369 G + MLV EG E Sbjct: 75 NGNNITMLVPGGEGPE 90
>P87173:YB18_SCHPO Uncharacterized protein C3D6.08c - Schizosaccharomyces pombe| (Fission yeast) Length = 140 Score = 33.9 bits (76), Expect = 0.54 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIE 255 L +VD+ V V L G+++ G L+ +DQ NL+L IE Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>Q8SQH7:LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein - Encephalitozoon| cuniculi Length = 70 Score = 32.7 bits (73), Expect = 1.2 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +1 Query: 139 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 240 L ++ + V+VK G TGTL+G+D+ +NL+L Sbjct: 8 LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML 41
>Q9VLV5:RUXE_DROME Probable small nuclear ribonucleoprotein E - Drosophila| melanogaster (Fruit fly) Length = 94 Score = 32.3 bits (72), Expect = 1.6 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%) Frame = +1 Query: 190 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQ---LGLIVCRG---TAVMLVS 351 ++ G + G+D+ +NLVLD+A E + KTRQ LG I+ +G T + VS Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEE----------VYVKTRQRRNLGRIMLKGDNITLIQNVS 90 Query: 352 PTE 360 PT+ Sbjct: 91 PTK 93
>P62305:RUXE_MOUSE Small nuclear ribonucleoprotein E - Mus musculus (Mouse)| Length = 92 Score = 31.2 bits (69), Expect = 3.5 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +1 Query: 190 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLV 348 ++ G + G+D+ +NLVLD+A E + + +QLG I+ +G + L+ Sbjct: 42 RIEGCIIGFDEYMNLVLDDAEEIHSK-------TKSRKQLGRIMLKGDNITLL 87
>P62304:RUXE_HUMAN Small nuclear ribonucleoprotein E - Homo sapiens (Human)| Length = 92 Score = 31.2 bits (69), Expect = 3.5 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +1 Query: 190 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLV 348 ++ G + G+D+ +NLVLD+A E + + +QLG I+ +G + L+ Sbjct: 42 RIEGCIIGFDEYMNLVLDDAEEIHSK-------TKSRKQLGRIMLKGDNITLL 87
>P62303:RUXE_CHICK Small nuclear ribonucleoprotein E - Gallus gallus (Chicken)| Length = 92 Score = 31.2 bits (69), Expect = 3.5 Identities = 16/53 (30%), Positives = 30/53 (56%) Frame = +1 Query: 190 QVTGTLKGYDQLLNLVLDEAIEFEREQDDPLKLSAKTRQLGLIVCRGTAVMLV 348 ++ G + G+D+ +NLVLD+A E + + +QLG I+ +G + L+ Sbjct: 42 RIEGCIIGFDEYMNLVLDDAEEIHSK-------TKSRKQLGRIMLKGDNITLL 87
>O07395:Y335_MYCAV UPF0353 protein MAV335 - Mycobacterium avium| Length = 335 Score = 30.4 bits (67), Expect = 5.9 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = +1 Query: 307 LGLIVCRGTAVMLVSPTEGTEEIKN 381 LGLI GTA +LVSPT E KN Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163
>P64856:Y1517_MYCBO UPF0353 protein Mb1517 - Mycobacterium bovis| Length = 335 Score = 30.4 bits (67), Expect = 5.9 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = +1 Query: 307 LGLIVCRGTAVMLVSPTEGTEEIKN 381 LGLI GTA +LVSPT E KN Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163
>P64855:Y1481_MYCTU UPF0353 protein Rv1481/MT1528 - Mycobacterium tuberculosis| Length = 335 Score = 30.4 bits (67), Expect = 5.9 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = +1 Query: 307 LGLIVCRGTAVMLVSPTEGTEEIKN 381 LGLI GTA +LVSPT E KN Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163
>Q740Y5:Y1207_MYCPA UPF0353 protein MAP_1207 - Mycobacterium paratuberculosis| Length = 335 Score = 30.4 bits (67), Expect = 5.9 Identities = 15/25 (60%), Positives = 16/25 (64%) Frame = +1 Query: 307 LGLIVCRGTAVMLVSPTEGTEEIKN 381 LGLI GTA +LVSPT E KN Sbjct: 139 LGLIAYAGTATVLVSPTTNREATKN 163
>P38203:LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 - Saccharomyces cerevisiae| (Baker's yeast) Length = 95 Score = 30.4 bits (67), Expect = 5.9 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +1 Query: 151 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 243 VD+ V V+L ++ GTL+ DQ LNL LD Sbjct: 11 VDQEVVVELKNDIEIKGTLQSVDQFLNLKLD 41 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 108,254,120 Number of extensions: 2321867 Number of successful extensions: 6182 Number of sequences better than 10.0: 53 Number of HSP's gapped: 6176 Number of HSP's successfully gapped: 53 Length of query: 217 Length of database: 100,686,439 Length adjustment: 109 Effective length of query: 108 Effective length of database: 70,788,284 Effective search space: 7645134672 Effective search space used: 7645134672 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
