ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf112m24 |
|---|---|
| Clone Library Name | barley_pub |
>Q5RES6:TPPC2_PONPY Trafficking protein particle complex subunit 2 - Pongo pygmaeus| (Orangutan) Length = 140 Score = 135 bits (341), Expect = 2e-31 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 3/130 (2%) Frame = +2 Query: 149 MASTACFVIVSKNDIPIYEAE---VGSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMF 319 M+ + FVIV +D P++E E G A K+D + +QFI HAALD+V + W +N M+ Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60 Query: 320 LRSVDRFNDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSR 499 L++VD+FN+ VS +VTAGH RF++LHD R EDGIK+FF +V++LYIK +NP Y P S Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120 Query: 500 IASSHFDTKV 529 I SS FD KV Sbjct: 121 IRSSAFDRKV 130
>O14582:TPPC2_HUMAN Trafficking protein particle complex subunit 2 - Homo sapiens| (Human) Length = 140 Score = 135 bits (341), Expect = 2e-31 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 3/130 (2%) Frame = +2 Query: 149 MASTACFVIVSKNDIPIYEAE---VGSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMF 319 M+ + FVIV +D P++E E G A K+D + +QFI HAALD+V + W +N M+ Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60 Query: 320 LRSVDRFNDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSR 499 L++VD+FN+ VS +VTAGH RF++LHD R EDGIK+FF +V++LYIK +NP Y P S Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120 Query: 500 IASSHFDTKV 529 I SS FD KV Sbjct: 121 IRSSAFDRKV 130
>Q3T0F2:TPPC2_BOVIN Trafficking protein particle complex subunit 2 - Bos taurus| (Bovine) Length = 140 Score = 135 bits (341), Expect = 2e-31 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 3/130 (2%) Frame = +2 Query: 149 MASTACFVIVSKNDIPIYEAE---VGSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMF 319 M+ + FVIV +D P++E E G A K+D + +QFI HAALD+V + W +N M+ Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60 Query: 320 LRSVDRFNDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSR 499 L++VD+FN+ VS +VTAGH RF++LHD R EDGIK+FF +V++LYIK +NP Y P S Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120 Query: 500 IASSHFDTKV 529 I SS FD KV Sbjct: 121 IRSSAFDRKV 130
>Q9CQP2:TPPC2_MOUSE Trafficking protein particle complex subunit 2 - Mus musculus| (Mouse) Length = 140 Score = 135 bits (340), Expect = 2e-31 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 3/130 (2%) Frame = +2 Query: 149 MASTACFVIVSKNDIPIYEAEV---GSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMF 319 M+ + FVIV +D P++E E G A K+D + +QFI HAALD+V + W +N M+ Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60 Query: 320 LRSVDRFNDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSR 499 L++VD+FN+ VS +VTAGH RF++LHD R EDGIK+FF +V++LYIK +NP Y P S Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120 Query: 500 IASSHFDTKV 529 I SS FD KV Sbjct: 121 IRSSAFDRKV 130
>P38334:TRS20_YEAST Transport protein particle 20 kDa subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 175 Score = 83.2 bits (204), Expect = 1e-15 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 40/161 (24%) Frame = +2 Query: 167 FVIVSKNDIPIYEAEVGSAPKKE----DLAYHHQFILHAALDVVQDLAWTTNAM------ 316 F I+ K D P+YE E +A + DL + FILHA+LD+V+DL W N Sbjct: 5 FAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNGN 64 Query: 317 ----------FLRS-------------VDRFNDLVVSVYVTAGHTRFMLLHDSRS----- 412 FLRS VD F L ++ Y++ +F+++H + + Sbjct: 65 GGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVV 124 Query: 413 --EDGIKSFFQEVHELYIKIFLNPLYLPGSRIASSHFDTKV 529 ++ ++SF+QEVHELY+K +NP Y I S FD++V Sbjct: 125 IDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRV 165
>Q9JME7:TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein - Mus| musculus (Mouse) Length = 139 Score = 65.1 bits (157), Expect = 3e-10 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 14/136 (10%) Frame = +2 Query: 164 CFVIVSKNDIPIYEAEVGSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMFLRSVDR-- 337 C +++K + P+Y + S P + +L +H +++H +LDVV + +AM VD+ Sbjct: 4 CIAVIAKENYPLY---IRSTPTESELKFH--YMVHTSLDVVDE---KISAMGKALVDQRE 55 Query: 338 --------FNDLVVSVYVTAGHTRFMLLHDSRS----EDGIKSFFQEVHELYIKIFLNPL 481 D V YVT +F+++ DS + ++ I+S F+++H Y + NP Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPF 115 Query: 482 YLPGSRIASSHFDTKV 529 Y PG RI S FDT V Sbjct: 116 YNPGDRIQSRAFDTMV 131
>Q9UL33:TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein - Homo| sapiens (Human) Length = 140 Score = 61.2 bits (147), Expect = 5e-09 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 15/137 (10%) Frame = +2 Query: 164 CFVIVSKNDIPIYEAEVGSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMFLRSVDR-- 337 C +++K + P+Y + S P + +L +H +++H +LDVV + +AM VD+ Sbjct: 4 CIAVIAKENYPLY---IRSTPTENELKFH--YMVHTSLDVVDE---KISAMGKALVDQRE 55 Query: 338 --------FNDLVVSVYVTAGHTRFMLLHDSRS----EDGIKSFFQEVHELYIKIFLNPL 481 D V YVT +F+++ DS + ++ I+S F+++H Y + NP Sbjct: 56 LYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPF 115 Query: 482 YLPGSRIASSH-FDTKV 529 Y PG RI SS FD V Sbjct: 116 YNPGDRIQSSRAFDNMV 132
>Q5M8X5:TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein -| Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) Length = 139 Score = 59.3 bits (142), Expect = 2e-08 Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 11/133 (8%) Frame = +2 Query: 164 CFVIVSKNDIPIYEAEVGSAPKKEDLAYHHQFILHAALDVVQD-------LAWTTNAMFL 322 C +++K + P+Y + S P + L +H + +H +LDVV + ++L Sbjct: 4 CVAVIAKENYPLY---IRSTPTENQLKFH--YTVHTSLDVVDEKISAMGKAVMDQRELYL 58 Query: 323 RSVDRFNDLVVSVYVTAGHTRFMLLHDSRS----EDGIKSFFQEVHELYIKIFLNPLYLP 490 + D V YVT +F+++ DS + ++ I+S F+++H Y + NP Y P Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNP 118 Query: 491 GSRIASSHFDTKV 529 G I S FD V Sbjct: 119 GDPIQSRAFDNTV 131
>Q5RBK9:TPC2L_PONPY Trafficking protein particle complex subunit 2-like protein - Pongo| pygmaeus (Orangutan) Length = 109 Score = 49.7 bits (117), Expect = 2e-05 Identities = 35/122 (28%), Positives = 55/122 (45%) Frame = +2 Query: 164 CFVIVSKNDIPIYEAEVGSAPKKEDLAYHHQFILHAALDVVQDLAWTTNAMFLRSVDRFN 343 C +++K + P+Y + S P + L +H +++H +LDVV + +AM VD+ Sbjct: 4 CIAVIAKENYPLY---IRSTPTENKLKFH--YMVHTSLDVVDE---KISAMGKALVDQRE 55 Query: 344 DLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSRIASSHFDT 523 + +Y T + F LH+S Y + NP Y PG RI S FD Sbjct: 56 LYLGLLYPTEDYKMFRKLHNS----------------YTDVMCNPFYNPGDRIQSRAFDN 99 Query: 524 KV 529 V Sbjct: 100 MV 101
>Q9P7B8:ARB1_SCHPO Argonaute-binding protein 1 - Schizosaccharomyces pombe (Fission| yeast) Length = 399 Score = 31.2 bits (69), Expect = 5.6 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +2 Query: 332 DRFNDLVVSVYVTAGHTRFMLLHDSRSEDGIKSFFQEVHELYIKIFLNPLYLPGSRIASS 511 DR +D V+ ++ + +T+FM + DGI F + YI+ L P YL G + Sbjct: 249 DRTSDSSVN-FIESNNTKFMPNDELFEPDGISRFSTQQARDYIQRTLGPRYLTGKVVEQE 307 Query: 512 HFDTKV 529 + K+ Sbjct: 308 YLTVKL 313
>P28569:TRK1_SACBA High-affinity potassium transport protein - Saccharomyces bayanus| (Yeast) (Saccharomyces uvarum) Length = 1241 Score = 31.2 bits (69), Expect = 5.6 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 397 PRFTQRGWNKKLFSRGP*TLHQD 465 P F +RGWN K+F GP T D Sbjct: 630 PNFKRRGWNGKMFEHGPYTSDSD 652
>P12685:TRK1_YEAST High-affinity potassium transport protein - Saccharomyces| cerevisiae (Baker's yeast) Length = 1235 Score = 30.4 bits (67), Expect = 9.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 397 PRFTQRGWNKKLFSRGP 447 P F +RGWN K+F GP Sbjct: 626 PNFRKRGWNNKIFEHGP 642 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 160,242,608 Number of extensions: 3652182 Number of successful extensions: 8648 Number of sequences better than 10.0: 12 Number of HSP's gapped: 8640 Number of HSP's successfully gapped: 12 Length of query: 288 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 176 Effective length of database: 69,965,399 Effective search space: 12313910224 Effective search space used: 12313910224 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
