| Clone Name | FLbaf112m24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245401.1| Zea mays clone 15111 mRNA sequence Length = 908 Score = 500 bits (252), Expect = e-138 Identities = 369/408 (90%) Strand = Plus / Plus Query: 148 aatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaatatatgaagc 207 |||||||||||||||||| || |||||||| |||||||| ||||||||||| ||||| || Sbjct: 252 aatggcaagtacagcatgctttgtgattgtcagtaagaatgacatcccaatctatgaggc 311 Query: 208 agaagttggatccgcaccaaagaaagaagatctggcttatcaccatcagttcatcctaca 267 |||||||||||| ||||| || ||||||||| || |||||||||||||||| || || || Sbjct: 312 agaagttggatctgcacccaaaaaagaagatttgtcttatcaccatcagtttattctgca 371 Query: 268 tgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctgaggtc 327 |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| Sbjct: 372 tgctgcattagatgttgttcaggatctagcatggacaacaaatgcaatgttcctgaagtc 431 Query: 328 ggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtcatactagatt 387 ||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 432 agttgatagattcaatgaccttgtggtgtctgtttatgtaactgctggtcataccagatt 491 Query: 388 catgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaagaggtcca 447 ||||||||| || || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 492 catgctgcttcatgactcgcgtagcgaggatggaataaaaagcttttttcaagaggtcca 551 Query: 448 tgaactttacatcaagatattcctcaacccgctgtatctgcctggctctcgcatcgcatc 507 ||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||| Sbjct: 552 tgaactttacatcaagatattcctcaacccgctttacctgcccggctctcgcatcacatc 611 Query: 508 gtctcattttgacaccaaggtgagggctcttgcgaggaagtatctgta 555 |||||||| || |||||||||||||| || ||||||| ||| ||||| Sbjct: 612 ctctcatttcgataccaaggtgagggcgctcgcgaggaggtacctgta 659
>emb|CT828279.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032K01, full insert sequence Length = 881 Score = 458 bits (231), Expect = e-125 Identities = 372/419 (88%) Strand = Plus / Plus Query: 138 tgttgctggaaatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaa 197 ||||| ||||||||||||| || || || |||| |||||| ||||||||||||||||||| Sbjct: 131 tgttggtggaaatggcaagcacggcgtgcttcgcgattgttagtaagaacgacatcccaa 190 Query: 198 tatatgaagcagaagttggatccgcaccaaagaaagaagatctggcttatcaccatcagt 257 | ||||| |||||||| ||||| ||||| || |||||||||||||||||||| || |||| Sbjct: 191 tctatgaggcagaagtcggatctgcaccgaaaaaagaagatctggcttatcagcaccagt 250 Query: 258 tcatcctacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgt 317 |||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 251 tcattctgcatgctgctttagatgttgttcaggacctagcatggtccacaaatgcaatgt 310 Query: 318 tcctgaggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtc 377 |||||| |||||| || ||||| || |||||||| ||||||||||||||||| || |||| Sbjct: 311 tcctgaagtcggtcgacagattcaacgaccttgttgtgtctgtttatgtaactgcaggtc 370 Query: 378 atactagattcatgctgctccacgattcacgcagcgaggatggaataaaaagcttttttc 437 || ||||||||||| |||| || |||||||| || ||||||||||| ||||||||||||| Sbjct: 371 atgctagattcatgttgcttcatgattcacgtagtgaggatggaattaaaagcttttttc 430 Query: 438 aagaggtccatgaactttacatcaagatattcctcaacccgctgtatctgcctggctctc 497 ||||||||||||| ||||| ||||||||||||||||| || || ||||||||||| |||| Sbjct: 431 aagaggtccatgagctttatatcaagatattcctcaatcccctctatctgcctggatctc 490 Query: 498 gcatcgcatcgtctcattttgacaccaaggtgagggctcttgcgaggaagtatctgtag 556 ||||| |||| ||||||||||| |||||||| |||||||| || |||| |||||||||| Sbjct: 491 gcatcacatcctctcattttgataccaaggtcagggctctcgcaaggaggtatctgtag 549
>gb|AY104420.1| Zea mays PCO112137 mRNA sequence Length = 728 Score = 444 bits (224), Expect = e-121 Identities = 343/383 (89%) Strand = Plus / Plus Query: 173 attgtaagtaagaacgacatcccaatatatgaagcagaagttggatccgcaccaaagaaa 232 ||||| |||||||| || |||||||| || || |||||||||||||| ||||| || ||| Sbjct: 224 attgtcagtaagaatgatatcccaatctacgaggcagaagttggatctgcacccaaaaaa 283 Query: 233 gaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttcaggac 292 || ||| || |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 284 gaggatttgtcttatcaccatcagtttatcctgcatgctgcgttagatgttgttcaggac 343 Query: 293 ctagcatggaccacaaatgcaatgttcctgaggtcggttgatagatttaatgaccttgtg 352 ||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| Sbjct: 344 ctagcatggaccacaaatgcaatgtccctgaagtcagttgatagattcaatgaccttgtg 403 Query: 353 gtgtctgtttatgtaaccgccggtcatactagattcatgctgctccacgattcacgcagc 412 ||||||||||||||||| || |||||||| ||||||||| |||| || || |||||||| Sbjct: 404 gtgtctgtttatgtaactgctggtcataccagattcatgttgcttcatgactcacgcagt 463 Query: 413 gaggatggaataaaaagcttttttcaagaggtccatgaactttacatcaagatattcctc 472 || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 464 gaagatggaataaaaagcttttttcaagaggtccatgagctttacatcaagatattcctg 523 Query: 473 aacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgacaccaaggtgagg 532 |||||||| || ||||| |||||||||||| |||| ||||||||||| |||||| | ||| Sbjct: 524 aacccgctttacctgcccggctctcgcatcacatcctctcattttgataccaagatcagg 583 Query: 533 gctcttgcgaggaagtatctgta 555 ||||| |||||||| || ||||| Sbjct: 584 gctctcgcgaggaantacctgta 606
>ref|NM_001059778.1| Oryza sativa (japonica cultivar-group) Os04g0503800 (Os04g0503800) mRNA, partial cds Length = 1359 Score = 383 bits (193), Expect = e-103 Identities = 295/329 (89%) Strand = Plus / Plus Query: 228 agaaagaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttc 287 |||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||| Sbjct: 706 agaaagaagatctggcttatcagcaccagttcattctgcatgctgctttagatgttgttc 765 Query: 288 aggacctagcatggaccacaaatgcaatgttcctgaggtcggttgatagatttaatgacc 347 |||||||||||||| ||||||||||||||||||||| |||||| || ||||| || |||| Sbjct: 766 aggacctagcatggtccacaaatgcaatgttcctgaagtcggtcgacagattcaacgacc 825 Query: 348 ttgtggtgtctgtttatgtaaccgccggtcatactagattcatgctgctccacgattcac 407 |||| ||||||||||||||||| || |||||| ||||||||||| |||| || ||||||| Sbjct: 826 ttgttgtgtctgtttatgtaactgcaggtcatgctagattcatgttgcttcatgattcac 885 Query: 408 gcagcgaggatggaataaaaagcttttttcaagaggtccatgaactttacatcaagatat 467 | || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 886 gtagtgaggatggaattaaaagcttttttcaagaggtccatgagctttatatcaagatat 945 Query: 468 tcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgacaccaagg 527 ||||||| || || ||||||||||| ||||||||| |||| ||||||||||| ||||||| Sbjct: 946 tcctcaatcccctctatctgcctggatctcgcatcacatcctctcattttgataccaagg 1005 Query: 528 tgagggctcttgcgaggaagtatctgtag 556 | |||||||| || |||| |||||||||| Sbjct: 1006 tcagggctctcgcaaggaggtatctgtag 1034 Score = 87.7 bits (44), Expect = 6e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 138 tgttgctggaaatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaa 197 ||||| ||||||||||||| || || || |||| |||||| ||||||||||||||||||| Sbjct: 116 tgttggtggaaatggcaagcacggcgtgcttcgcgattgttagtaagaacgacatcccaa 175 Query: 198 tatatgaagcagaagttggatccgcacc 225 | ||||| |||||||| ||||| ||||| Sbjct: 176 tctatgaggcagaagtcggatctgcacc 203
>dbj|AK121895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105D14, full insert sequence Length = 1360 Score = 383 bits (193), Expect = e-103 Identities = 295/329 (89%) Strand = Plus / Plus Query: 228 agaaagaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttc 287 |||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||| Sbjct: 707 agaaagaagatctggcttatcagcaccagttcattctgcatgctgctttagatgttgttc 766 Query: 288 aggacctagcatggaccacaaatgcaatgttcctgaggtcggttgatagatttaatgacc 347 |||||||||||||| ||||||||||||||||||||| |||||| || ||||| || |||| Sbjct: 767 aggacctagcatggtccacaaatgcaatgttcctgaagtcggtcgacagattcaacgacc 826 Query: 348 ttgtggtgtctgtttatgtaaccgccggtcatactagattcatgctgctccacgattcac 407 |||| ||||||||||||||||| || |||||| ||||||||||| |||| || ||||||| Sbjct: 827 ttgttgtgtctgtttatgtaactgcaggtcatgctagattcatgttgcttcatgattcac 886 Query: 408 gcagcgaggatggaataaaaagcttttttcaagaggtccatgaactttacatcaagatat 467 | || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 887 gtagtgaggatggaattaaaagcttttttcaagaggtccatgagctttatatcaagatat 946 Query: 468 tcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgacaccaagg 527 ||||||| || || ||||||||||| ||||||||| |||| ||||||||||| ||||||| Sbjct: 947 tcctcaatcccctctatctgcctggatctcgcatcacatcctctcattttgataccaagg 1006 Query: 528 tgagggctcttgcgaggaagtatctgtag 556 | |||||||| || |||| |||||||||| Sbjct: 1007 tcagggctctcgcaaggaggtatctgtag 1035 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 138 tgttgctggaaatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaa 197 ||||| ||||||||||||| || || || |||| |||||| ||| ||||||||||||||| Sbjct: 117 tgttggtggaaatggcaagcacggcgtgcttcgcgattgttagtgagaacgacatcccaa 176 Query: 198 tatatgaagcagaagttggatccgcacc 225 | ||||| |||||||| ||||| ||||| Sbjct: 177 tctatgaggcagaagtcggatctgcacc 204
>gb|AY581838.1| Cynodon dactylon putative TRAPP subunit mRNA, complete cds Length = 708 Score = 313 bits (158), Expect = 6e-82 Identities = 338/398 (84%) Strand = Plus / Plus Query: 148 aatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaatatatgaagc 207 |||||| |||||||| || ||||||||||| |||||||| ||||||||||| || | || Sbjct: 154 aatggcgagtacagcctgcttcgtgattgttagtaagaatgacatcccaatctacggggc 213 Query: 208 agaagttggatccgcaccaaagaaagaagatctggcttatcaccatcagttcatcctaca 267 ||||||||||| || ||||| |||||||| | |||||||| ||||||||||| | || Sbjct: 214 tgaagttggatctgctccaaaaaaagaagaattagcttatcagcatcagttcattttgca 273 Query: 268 tgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctgaggtc 327 ||| ||||| |||||||||||||| || |||||||| |||||||| ||||| |||| ||| Sbjct: 274 tgccgcgttggatgttgttcaggatcttgcatggactacaaatgcgatgtttctgaagtc 333 Query: 328 ggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtcatactagatt 387 ||||||||||| || |||||||| ||||||||||||||||| || |||||||||||||| Sbjct: 334 agttgatagattcaacgaccttgttgtgtctgtttatgtaactgctggtcatactagatt 393 Query: 388 catgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaagaggtcca 447 ||| |||| || || || || |||||||| |||||||||| || ||||| ||||| || Sbjct: 394 tatgttgcttcatgactcccgaagcgaggacggaataaaaactttctttcaggaggttca 453 Query: 448 tgaactttacatcaagatattcctcaacccgctgtatctgcctggctctcgcatcgcatc 507 |||||||||||||||||||||||| || || || || ||||||| ||||||||| |||| Sbjct: 454 tgaactttacatcaagatattccttaatccactctacttgcctggttctcgcatcacatc 513 Query: 508 gtctcattttgacaccaaggtgagggctcttgcgagga 545 || |||||||| |||||||| ||||||||||| |||| Sbjct: 514 ctcccattttgataccaaggtcagggctcttgcaagga 551
>ref|NM_001053955.1| Oryza sativa (japonica cultivar-group) Os02g0613600 (Os02g0613600) mRNA, complete cds Length = 832 Score = 248 bits (125), Expect = 3e-62 Identities = 338/409 (82%) Strand = Plus / Plus Query: 149 atggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaatatatgaagca 208 ||||| || |||||||| || |||||||| ||||| || || || ||||| || || || Sbjct: 125 atggcgagcacagcatgctttgtgattgtgagtaaaaatgatattccaatctacgaggct 184 Query: 209 gaagttggatccgcaccaaagaaagaagatctggcttatcaccatcagttcatcctacat 268 |||||||| || || || |||| |||||||| |||||||| || |||||||| | || Sbjct: 185 gaagttgggtctgctcccaagagagaagatcaagcttatcagcaccagttcatattgcac 244 Query: 269 gctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctgaggtcg 328 ||||| |||||||||||||||||||| |||||| | ||||| ||||||| |||| ||| Sbjct: 245 gctgcattagatgttgttcaggaccttgcatgggctacaaacacaatgtttctgaagtca 304 Query: 329 gttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtcatactagattc 388 || || |||||| |||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 305 gtagacagatttgatgatcttgtggtgtctgtttatgtaactgctggtcatactagattt 364 Query: 389 atgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaagaggtccat 448 ||| | || || || ||| | |||||||||||||||||||| || || || ||||| || Sbjct: 365 atgttacttcatgactcaaggagcgaggatggaataaaaagtttcttccaggaggttcac 424 Query: 449 gaactttacatcaagatattcctcaacccgctgtatctgcctggctctcgcatcgcatcg 508 ||||| ||||||||||| |||||||| || || || || ||||| ||||||||| |||| Sbjct: 425 gaactctacatcaagatcttcctcaatccactctacctacctggttctcgcatcacatcc 484 Query: 509 tctcattttgacaccaaggtgagggctcttgcgaggaagtatctgtagc 557 ||||||||||| || ||||| ||||||||||| ||||| || ||||||| Sbjct: 485 tctcattttgatactaaggtcagggctcttgcaaggaaatacctgtagc 533
>dbj|AK071179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084J18, full insert sequence Length = 833 Score = 248 bits (125), Expect = 3e-62 Identities = 338/409 (82%) Strand = Plus / Plus Query: 149 atggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaatatatgaagca 208 ||||| || |||||||| || |||||||| ||||| || || || ||||| || || || Sbjct: 126 atggcgagcacagcatgctttgtgattgtgagtaaaaatgatattccaatctacgaggct 185 Query: 209 gaagttggatccgcaccaaagaaagaagatctggcttatcaccatcagttcatcctacat 268 |||||||| || || || |||| |||||||| |||||||| || |||||||| | || Sbjct: 186 gaagttgggtctgctcccaagagagaagatcaagcttatcagcaccagttcatattgcac 245 Query: 269 gctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctgaggtcg 328 ||||| |||||||||||||||||||| |||||| | ||||| ||||||| |||| ||| Sbjct: 246 gctgcattagatgttgttcaggaccttgcatgggctacaaacacaatgtttctgaagtca 305 Query: 329 gttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtcatactagattc 388 || || |||||| |||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 306 gtagacagatttgatgatcttgtggtgtctgtttatgtaactgctggtcatactagattt 365 Query: 389 atgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaagaggtccat 448 ||| | || || || ||| | |||||||||||||||||||| || || || ||||| || Sbjct: 366 atgttacttcatgactcaaggagcgaggatggaataaaaagtttcttccaggaggttcac 425 Query: 449 gaactttacatcaagatattcctcaacccgctgtatctgcctggctctcgcatcgcatcg 508 ||||| ||||||||||| |||||||| || || || || ||||| ||||||||| |||| Sbjct: 426 gaactctacatcaagatcttcctcaatccactctacctacctggttctcgcatcacatcc 485 Query: 509 tctcattttgacaccaaggtgagggctcttgcgaggaagtatctgtagc 557 ||||||||||| || ||||| ||||||||||| ||||| || ||||||| Sbjct: 486 tctcattttgatactaaggtcagggctcttgcaaggaaatacctgtagc 534
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 131 bits (66), Expect = 5e-27 Identities = 84/90 (93%) Strand = Plus / Plus Query: 228 agaaagaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttc 287 |||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||| Sbjct: 25126169 agaaagaagatctggcttatcagcaccagttcattctgcatgctgctttagatgttgttc 25126228 Query: 288 aggacctagcatggaccacaaatgcaatgt 317 |||||||||||||| ||||||||||||||| Sbjct: 25126229 aggacctagcatggtccacaaatgcaatgt 25126258 Score = 101 bits (51), Expect = 4e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 381 ctagattcatgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaag 440 ||||||||||| |||| || |||||||| || ||||||||||| |||||||||||||||| Sbjct: 25126593 ctagattcatgttgcttcatgattcacgtagtgaggatggaattaaaagcttttttcaag 25126652 Query: 441 aggtccatgaactttacatcaag 463 |||||||||| ||||| |||||| Sbjct: 25126653 aggtccatgagctttatatcaag 25126675 Score = 101 bits (51), Expect = 4e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 462 agatattcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgaca 521 ||||||||||||| || || ||||||||||| ||||||||| |||| ||||||||||| | Sbjct: 25126971 agatattcctcaatcccctctatctgcctggatctcgcatcacatcctctcattttgata 25127030 Query: 522 ccaaggtgagggctcttgcgaggaagtatctgtag 556 ||||||| |||||||| || |||| |||||||||| Sbjct: 25127031 ccaaggtcagggctctcgcaaggaggtatctgtag 25127065 Score = 87.7 bits (44), Expect = 6e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 138 tgttgctggaaatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaa 197 ||||| ||||||||||||| || || || |||| |||||| ||||||||||||||||||| Sbjct: 25125579 tgttggtggaaatggcaagcacggcgtgcttcgcgattgttagtaagaacgacatcccaa 25125638 Query: 198 tatatgaagcagaagttggatccgcacc 225 | ||||| |||||||| ||||| ||||| Sbjct: 25125639 tctatgaggcagaagtcggatctgcacc 25125666 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 316 gttcctgaggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccgg 375 |||||||| |||||| || ||||| || |||||||| ||||||||||||||||| || || Sbjct: 25126423 gttcctgaagtcggtcgacagattcaacgaccttgttgtgtctgtttatgtaactgcagg 25126482 Query: 376 tcata 380 ||||| Sbjct: 25126483 tcata 25126487 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 562 ggccgcggagcagcttggcgtcgta 586 |||||||||||||||||||| |||| Sbjct: 25259914 ggccgcggagcagcttggcgccgta 25259938
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 131 bits (66), Expect = 5e-27 Identities = 84/90 (93%) Strand = Plus / Plus Query: 228 agaaagaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttc 287 |||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||| Sbjct: 7836 agaaagaagatctggcttatcagcaccagttcattctgcatgctgctttagatgttgttc 7895 Query: 288 aggacctagcatggaccacaaatgcaatgt 317 |||||||||||||| ||||||||||||||| Sbjct: 7896 aggacctagcatggtccacaaatgcaatgt 7925 Score = 101 bits (51), Expect = 4e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 381 ctagattcatgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaag 440 ||||||||||| |||| || |||||||| || ||||||||||| |||||||||||||||| Sbjct: 8260 ctagattcatgttgcttcatgattcacgtagtgaggatggaattaaaagcttttttcaag 8319 Query: 441 aggtccatgaactttacatcaag 463 |||||||||| ||||| |||||| Sbjct: 8320 aggtccatgagctttatatcaag 8342 Score = 101 bits (51), Expect = 4e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 462 agatattcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgaca 521 ||||||||||||| || || ||||||||||| ||||||||| |||| ||||||||||| | Sbjct: 8638 agatattcctcaatcccctctatctgcctggatctcgcatcacatcctctcattttgata 8697 Query: 522 ccaaggtgagggctcttgcgaggaagtatctgtag 556 ||||||| |||||||| || |||| |||||||||| Sbjct: 8698 ccaaggtcagggctctcgcaaggaggtatctgtag 8732 Score = 87.7 bits (44), Expect = 6e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 138 tgttgctggaaatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaa 197 ||||| ||||||||||||| || || || |||| |||||| ||||||||||||||||||| Sbjct: 7246 tgttggtggaaatggcaagcacggcgtgcttcgcgattgttagtaagaacgacatcccaa 7305 Query: 198 tatatgaagcagaagttggatccgcacc 225 | ||||| |||||||| ||||| ||||| Sbjct: 7306 tctatgaggcagaagtcggatctgcacc 7333 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 316 gttcctgaggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccgg 375 |||||||| |||||| || ||||| || |||||||| ||||||||||||||||| || || Sbjct: 8090 gttcctgaagtcggtcgacagattcaacgaccttgttgtgtctgtttatgtaactgcagg 8149 Query: 376 tcata 380 ||||| Sbjct: 8150 tcata 8154
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 131 bits (66), Expect = 5e-27 Identities = 84/90 (93%) Strand = Plus / Plus Query: 228 agaaagaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttc 287 |||||||||||||||||||||| || |||||||| || |||||||| ||||||||||||| Sbjct: 73596 agaaagaagatctggcttatcagcaccagttcattctgcatgctgctttagatgttgttc 73655 Query: 288 aggacctagcatggaccacaaatgcaatgt 317 |||||||||||||| ||||||||||||||| Sbjct: 73656 aggacctagcatggtccacaaatgcaatgt 73685 Score = 101 bits (51), Expect = 4e-18 Identities = 75/83 (90%) Strand = Plus / Plus Query: 381 ctagattcatgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaag 440 ||||||||||| |||| || |||||||| || ||||||||||| |||||||||||||||| Sbjct: 74020 ctagattcatgttgcttcatgattcacgtagtgaggatggaattaaaagcttttttcaag 74079 Query: 441 aggtccatgaactttacatcaag 463 |||||||||| ||||| |||||| Sbjct: 74080 aggtccatgagctttatatcaag 74102 Score = 101 bits (51), Expect = 4e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 462 agatattcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgaca 521 ||||||||||||| || || ||||||||||| ||||||||| |||| ||||||||||| | Sbjct: 74398 agatattcctcaatcccctctatctgcctggatctcgcatcacatcctctcattttgata 74457 Query: 522 ccaaggtgagggctcttgcgaggaagtatctgtag 556 ||||||| |||||||| || |||| |||||||||| Sbjct: 74458 ccaaggtcagggctctcgcaaggaggtatctgtag 74492 Score = 87.7 bits (44), Expect = 6e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 138 tgttgctggaaatggcaagtacagcatgtttcgtgattgtaagtaagaacgacatcccaa 197 ||||| ||||||||||||| || || || |||| |||||| ||||||||||||||||||| Sbjct: 73006 tgttggtggaaatggcaagcacggcgtgcttcgcgattgttagtaagaacgacatcccaa 73065 Query: 198 tatatgaagcagaagttggatccgcacc 225 | ||||| |||||||| ||||| ||||| Sbjct: 73066 tctatgaggcagaagtcggatctgcacc 73093 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 316 gttcctgaggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccgg 375 |||||||| |||||| || ||||| || |||||||| ||||||||||||||||| || || Sbjct: 73850 gttcctgaagtcggtcgacagattcaacgaccttgttgtgtctgtttatgtaactgcagg 73909 Query: 376 tcata 380 ||||| Sbjct: 73910 tcata 73914
>dbj|AK228202.1| Arabidopsis thaliana mRNA for arginine methyltransferase like protein, complete cds, clone: RAFL14-65-E04 Length = 2482 Score = 91.7 bits (46), Expect = 4e-15 Identities = 208/262 (79%) Strand = Plus / Plus Query: 264 tacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctga 323 ||||||| |||||||||||||| || |||||||||||||| |||| ||| |||||| ||| Sbjct: 1976 tacatgcagcgttagatgttgtccaagacctagcatggactacaagtgccatgttcttga 2035 Query: 324 ggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtcatacta 383 ||| || || || ||||| || || || ||||| || ||||| ||||| || ||||| Sbjct: 2036 agtcagtggacaggtttaacgatctggttgtgtcagtatatgttaccgcaggccataccc 2095 Query: 384 gattcatgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaagagg 443 || | ||||| || || |||||||| | ||||| || || || ||||| |||||||||| Sbjct: 2096 gactgatgctccttcatgattcacggaatgaggacggcatcaagagcttctttcaagagg 2155 Query: 444 tccatgaactttacatcaagatattcctcaacccgctgtatctgcctggctctcgcatcg 503 | ||||| ||||| || ||||| | || || || ||||||| ||||| ||||| || Sbjct: 2156 tgcatgagctttatataaagattcttctgaatcccttgtatcttcctggttctcggataa 2215 Query: 504 catcgtctcattttgacaccaa 525 | ||||| |||||||||||||| Sbjct: 2216 cgtcgtcacattttgacaccaa 2237
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 71.9 bits (36), Expect = 4e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 462 agatattcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgaca 521 |||| |||||||| || || || || ||||| ||||||||| |||| ||||||||||| | Sbjct: 24220249 agatcttcctcaatccactctacctacctggttctcgcatcacatcctctcattttgata 24220308 Query: 522 ccaaggtgagggctcttgcgaggaagtatctgtagc 557 | ||||| ||||||||||| ||||| || ||||||| Sbjct: 24220309 ctaaggtcagggctcttgcaaggaaatacctgtagc 24220344 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 232 agaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttcagga 291 |||||||| |||||||| || |||||||| | || ||||| ||||||||||||||||| Sbjct: 24217873 agaagatcaagcttatcagcaccagttcatattgcacgctgcattagatgttgttcagga 24217932 Query: 292 cctagcatgg 301 ||| |||||| Sbjct: 24217933 ccttgcatgg 24217942 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 335 agatttaatgaccttgtggtgtctgtttatgtaaccgccggtcata 380 |||||| |||| ||||||||||||||||||||||| || ||||||| Sbjct: 24218102 agatttgatgatcttgtggtgtctgtttatgtaactgctggtcata 24218147 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 377 catactagattcatgctgctccacgattcacgcagcgaggatggaataaaaagctttttt 436 ||||||||||| ||| | || || || ||| | |||||||||||||||||||| || || Sbjct: 24218442 catactagatttatgttacttcatgactcaaggagcgaggatggaataaaaagtttcttc 24218501 Query: 437 caagaggtccatgaactttacatcaag 463 || ||||| || ||||| ||||||||| Sbjct: 24218502 caggaggttcacgaactctacatcaag 24218528
>dbj|AP005300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2055_H10 Length = 119290 Score = 71.9 bits (36), Expect = 4e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 462 agatattcctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgaca 521 |||| |||||||| || || || || ||||| ||||||||| |||| ||||||||||| | Sbjct: 20637 agatcttcctcaatccactctacctacctggttctcgcatcacatcctctcattttgata 20696 Query: 522 ccaaggtgagggctcttgcgaggaagtatctgtagc 557 | ||||| ||||||||||| ||||| || ||||||| Sbjct: 20697 ctaaggtcagggctcttgcaaggaaatacctgtagc 20732 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 232 agaagatctggcttatcaccatcagttcatcctacatgctgcgttagatgttgttcagga 291 |||||||| |||||||| || |||||||| | || ||||| ||||||||||||||||| Sbjct: 18261 agaagatcaagcttatcagcaccagttcatattgcacgctgcattagatgttgttcagga 18320 Query: 292 cctagcatgg 301 ||| |||||| Sbjct: 18321 ccttgcatgg 18330 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 335 agatttaatgaccttgtggtgtctgtttatgtaaccgccggtcata 380 |||||| |||| ||||||||||||||||||||||| || ||||||| Sbjct: 18490 agatttgatgatcttgtggtgtctgtttatgtaactgctggtcata 18535 Score = 54.0 bits (27), Expect = 9e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 377 catactagattcatgctgctccacgattcacgcagcgaggatggaataaaaagctttttt 436 ||||||||||| ||| | || || || ||| | |||||||||||||||||||| || || Sbjct: 18830 catactagatttatgttacttcatgactcaaggagcgaggatggaataaaaagtttcttc 18889 Query: 437 caagaggtccatgaactttacatcaag 463 || ||||| || ||||| ||||||||| Sbjct: 18890 caggaggttcacgaactctacatcaag 18916
>ref|NM_106698.2| Arabidopsis thaliana intracellular transporter (AT1G80500) mRNA, complete cds Length = 491 Score = 65.9 bits (33), Expect = 2e-07 Identities = 90/109 (82%) Strand = Plus / Plus Query: 264 tacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctga 323 ||||||| |||||||||||||| || |||||||||||||| |||| ||| |||||| ||| Sbjct: 361 tacatgcagcgttagatgttgtccaagacctagcatggactacaagtgccatgttcttga 420 Query: 324 ggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgc 372 ||| || || || ||||| || || || ||||| || ||||| ||||| Sbjct: 421 agtcagtggacaggtttaacgatctggttgtgtcagtatatgttaccgc 469
>gb|BT009701.1| Arabidopsis thaliana At1g80500 gene, complete cds Length = 246 Score = 65.9 bits (33), Expect = 2e-07 Identities = 90/109 (82%) Strand = Plus / Plus Query: 264 tacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctga 323 ||||||| |||||||||||||| || |||||||||||||| |||| ||| |||||| ||| Sbjct: 116 tacatgcagcgttagatgttgtccaagacctagcatggactacaagtgccatgttcttga 175 Query: 324 ggtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgc 372 ||| || || || ||||| || || || ||||| || ||||| ||||| Sbjct: 176 agtcagtggacaggtttaacgatctggttgtgtcagtatatgttaccgc 224
>emb|BX814436.1|CNS0AEAR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB73ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 793 Score = 65.9 bits (33), Expect = 2e-07 Identities = 204/261 (78%) Strand = Plus / Plus Query: 265 acatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgttcctgag 324 |||||| |||||||||||||| || |||||||||||||| || | ||| |||||| ||| Sbjct: 299 acatgcagcgttagatgttgtccaagacctagcatggactacgagtgccatgttcttgaa 358 Query: 325 gtcggttgatagatttaatgaccttgtggtgtctgtttatgtaaccgccggtcatactag 384 ||| || | || ||||| || || || ||||| || ||||| ||||| || ||||| | Sbjct: 359 gtcagtgtacaggtttaacgatctggttgtgtcagtatatgttaccgcaggccatacccg 418 Query: 385 attcatgctgctccacgattcacgcagcgaggatggaataaaaagcttttttcaagaggt 444 | | ||||| || || ||||||| | ||||| || || || ||||| ||||||||||| Sbjct: 419 actgatgctccttcatcattcacggaatgaggacggcatcaagagcttctttcaagaggt 478 Query: 445 ccatgaactttacatcaagatattcctcaacccgctgtatctgcctggctctcgcatcgc 504 ||||| ||||| || ||||| | || || || ||||||| ||||| ||||| || | Sbjct: 479 gcatgagctttatataaagattcttctaaatcccttgtatcttcctggttctcggataac 538 Query: 505 atcgtctcattttgacaccaa 525 ||||| |||||||||||||| Sbjct: 539 gtcgtcacattttgacaccaa 559
>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence Length = 132990 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 264 tacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgt 317 ||||||| |||||||||||||| || |||||||||||||| |||| ||| |||| Sbjct: 99361 tacatgcagcgttagatgttgtccaagacctagcatggactacaagtgccatgt 99414
>gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence Length = 89811 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 264 tacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgt 317 ||||||| |||||||||||||| || |||||||||||||| |||| ||| |||| Sbjct: 46789 tacatgcagcgttagatgttgtccaagacctagcatggactacaagtgccatgt 46736
>emb|BX817137.1|CNS0ABNG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZB06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1467 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Plus Query: 264 tacatgctgcgttagatgttgttcaggacctagcatggaccacaaatgcaatgt 317 ||||||| |||||||||||||| || |||| ||||||||| |||| ||| |||| Sbjct: 841 tacatgcagcgttagatgttgtccaagacccagcatggactacaagtgccatgt 894 Score = 44.1 bits (22), Expect = 0.82 Identities = 79/98 (80%) Strand = Plus / Plus Query: 428 agcttttttcaagaggtccatgaactttacatcaagatattcctcaacccgctgtatctg 487 ||||| ||||||||||| ||||| ||||| || ||||| | || || || ||||||| Sbjct: 1219 agcttctttcaagaggtgcatgagctttatataaagattcttctgaatcccttgtatctt 1278 Query: 488 cctggctctcgcatcgcatcgtctcattttgacaccaa 525 ||||| ||||| || | ||||| |||||||||||||| Sbjct: 1279 cctggttctcggataacgtcgtcacattttgacaccaa 1316
>emb|CT009488.4| M.truncatula DNA sequence from clone MTH2-70J8 on chromosome 3, complete sequence Length = 119377 Score = 50.1 bits (25), Expect = 0.013 Identities = 46/53 (86%) Strand = Plus / Minus Query: 251 catcagttcatcctacatgctgcgttagatgttgttcaggacctagcatggac 303 |||||||||||||| ||||| || | |||||||| |||||||| |||||||| Sbjct: 90102 catcagttcatcctgcatgcagctcttgatgttgtacaggaccttgcatggac 90050
>gb|AC185363.2| Populus trichocarpa clone Pop1-63B19, complete sequence Length = 97526 Score = 48.1 bits (24), Expect = 0.053 Identities = 48/56 (85%) Strand = Plus / Minus Query: 470 ctcaacccgctgtatctgcctggctctcgcatcgcatcgtctcattttgacaccaa 525 |||||||| || ||| ||||||| || ||||| ||||| || |||||||||||||| Sbjct: 11014 ctcaaccccctctatttgcctggttcccgcattgcatcttcgcattttgacaccaa 10959
>dbj|AP004532.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09L22, TM0063, complete sequence Length = 89936 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 278 gatgttgttcaggacctagcatggac 303 ||||||||||||||||| |||||||| Sbjct: 2131 gatgttgttcaggaccttgcatggac 2156
>ref|NM_001059793.1| Oryza sativa (japonica cultivar-group) Os04g0506300 (Os04g0506300) mRNA, complete cds Length = 1550 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 562 ggccgcggagcagcttggcgtcgta 586 |||||||||||||||||||| |||| Sbjct: 416 ggccgcggagcagcttggcgccgta 392
>dbj|AB270745.1| Prunus cerasus S6-RNase gene, promoter region, haplotype: S6m Length = 3563 Score = 42.1 bits (21), Expect = 3.3 Identities = 45/53 (84%) Strand = Plus / Minus Query: 251 catcagttcatcctacatgctgcgttagatgttgttcaggacctagcatggac 303 ||||||||||| |||||||||| | ||| ||||||||||||| || ||||| Sbjct: 824 catcagttcatattacatgctgctctggatattgttcaggaccttgcctggac 772
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 gacgacgccggcgggcggctccggc 75 ||||||||||||| ||||||||||| Sbjct: 2940944 gacgacgccggcgcgcggctccggc 2940968
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 tttcgtgattgtaagtaagaa 186 ||||||||||||||||||||| Sbjct: 1736528 tttcgtgattgtaagtaagaa 1736508
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 gacgacgccggcgggcggctccggc 75 ||||||||||||| ||||||||||| Sbjct: 1119470 gacgacgccggcgcgcggctccggc 1119494
>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11, complete sequence Length = 143582 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 562 ggccgcggagcagcttggcgtcgta 586 |||||||||||||||||||| |||| Sbjct: 42054 ggccgcggagcagcttggcgccgta 42078
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 ggcgcgagcaggacgacgccggcgg 64 |||||||||||| |||||||||||| Sbjct: 8083838 ggcgcgagcaggccgacgccggcgg 8083814
>dbj|AK063591.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A12, full insert sequence Length = 1550 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 562 ggccgcggagcagcttggcgtcgta 586 |||||||||||||||||||| |||| Sbjct: 416 ggccgcggagcagcttggcgccgta 392 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 148,113,532 Number of extensions: 7870221 Number of successful extensions: 158359 Number of sequences better than 10.0: 31 Number of HSP's gapped: 158356 Number of HSP's successfully gapped: 54 Length of query: 864 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 842 Effective length of database: 18,508,616,841 Effective search space: 15584255380122 Effective search space used: 15584255380122 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)