>Q12462:PEX11_YEAST Peroxisomal membrane protein PMP27 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 236
 Score = 42.7 bits (99), Expect = 0.003
 Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 12/218 (5%)
 Frame = +2

Query: 233 VLYLNKAEARDKICRAIQYGSKFIS-NGQPGTAQNVDKSTTLARKVFRLLKWVNDLHALI 409
           V +L+ +  R+K+ R +QY ++F++       A+ +    T  RK  R LK +N L A  
Sbjct: 16  VKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRKFLRFLKPLNHLQA-- 73

Query: 410 SPAAK------GTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSGIYQNKERT-DRIARIS 568
             AAK       +   + +    KN   + +L LDQ   L    +      T  +I R S
Sbjct: 74  --AAKFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQVNLLRILKVIPVTVLTGKKIPRWS 131

Query: 569 LYCWMASSVCASLVELGELK--RLSKAMRKRAKELRGADKYED-EQYLGKMKQSDDRLLA 739
            +CW+   +    ++L +++      A   +AK     D++ED ++ LGK  Q  DR  A
Sbjct: 132 NWCWLFGLLSGLAMDLRKIQTSHAQIAAFVKAKSQSQGDEHEDHKKVLGKAYQ--DRYTA 189

Query: 740 LVKAGMDVVVA-VGLLQLAPKKVTPRVTGAFGFVTSLI 850
           L +   D   + + L  L             G VTS++
Sbjct: 190 LRRLFWDAADSFIVLNNLGYLSSNEEYVALSGVVTSIL 227

>Q00317:PX11B_CANBO Peroxisomal membrane protein PMP30B - Candida boidinii (Yeast)|
          Length = 256

 Score = 33.1 bits (74), Expect = 2.5
 Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 28/232 (12%)
 Frame = +2

Query: 239 YLNKAEARDKICRAIQYGSKFIS------NGQPGTAQNVDK---STTLARKVFRLLK--- 382
           +L+ + +R+K+ R +QY  +F++      N    T Q + K   S  ++RK  R LK   
Sbjct: 18  FLDSSASREKLLRLLQYLCRFLTFYTFKRNFNIETIQLIKKIQSSIGISRKPLRFLKNLP 77

Query: 383 WVNDLHALISPAAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSGIYQNKERTD---R 553
            + +L+ + S     +  TL +    KN   + +   D   WL   G+  +K       +
Sbjct: 78  HLKNLNKIYSNELLDS--TLKIGDLIKNFGYALYFQFDTLQWLKLLGLLTSKNSGSLYFK 135

Query: 554 IARISLYCWMASSVCASLVELGELKRLSKAMRKRAKELRGADKYEDEQYLGK--MKQSDD 727
           I +++   W+     + + +L  LK    + +    E+   +   +   L +  ++Q++D
Sbjct: 136 IDKLAANFWLIGLTGSIITDLRNLKISYDSNKALLNEINSQNNNSNNDTLDEKLIEQNND 195

Query: 728 RLLA-----------LVKAGMDVVVAVGLLQLAPKKVTPRVTGAFGFVTSLI 850
            +L            L K  +D ++A+   QL    +   V G  G +TS+I
Sbjct: 196 LILKNNEKINLNKRDLFKNILDSLIALKGSQLI--DLNDGVLGFAGIITSII 245

>Q501R9:NBR1_RAT Next to BRCA1 gene 1 protein - Rattus norvegicus (Rat)|
          Length = 983

 Score = 32.3 bits (72), Expect = 4.2
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 412 PCRQRHPSHTGPAWEVQECSAVDLLVPGPVRVAREIG-DLPEQGAHGPHRQDI 567
           PCRQR P      +  +E     L++PG  R    +   LPE+G HG  R++I
Sbjct: 670 PCRQRSPQRELQLYSTEEQQP--LMLPGFCRKDSSLKFALPEEGPHGDEREEI 720

>Q9D2Z8:KIF12_MOUSE Kinesin-like protein KIF12 - Mus musculus (Mouse)|
          Length = 642

 Score = 28.5 bits (62), Expect(2) = 4.6
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = +3

Query: 423 KAPLSHWSCLGSPRMLCCRPSCSWTSSCG*GDRGFTRTRSARTASPGYPSTAGWPPP 593
           + PL+HW+C   PR  C  P                        +PG+ S + WPPP
Sbjct: 506 RVPLAHWTC---PRRECHMPQV------------------LEPEAPGHISQSVWPPP 541



 Score = 22.3 bits (46), Expect(2) = 4.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 271 LQGHPVRLQVHQQRPARH--RAE----RRQVHHLGSQGLQAPKVGERSSCSHQPCR 420
           L+   +R ++ Q R +R   RAE     +QVH L  + L A  + ++ S    PCR
Sbjct: 427 LENERLRKEMRQLRSSRDLARAEQRVLAQQVHDLERRLLSACPLPQQGSTPVCPCR 482

>Q9EPI6:NELF_RAT Nasal embryonic luteinizing hormone-releasing hormone factor -|
           Rattus norvegicus (Rat)
          Length = 532

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 27/81 (33%), Positives = 35/81 (43%)
 Frame = +1

Query: 319 RHRAERRQVHHLGSQGLQAPKVGERSSCSHQPCRQRHPSHTGPAWEVQECSAVDLLVPGP 498
           R + ER   HH  SQ L+A     R   S +PC+    S  G     +EC     LVPGP
Sbjct: 127 RRQRERHPHHH--SQPLRASPGSSREDIS-RPCQSWAGSRQGS----KECPGCAKLVPGP 179

Query: 499 VRVAREIGDLPEQGAHGPHRQ 561
              A  +   P   A G H++
Sbjct: 180 SPRAFGLEQPPLPEASGRHKK 200

>Q99NF2:NELF_MOUSE Nasal embryonic luteinizing hormone-releasing hormone factor - Mus|
           musculus (Mouse)
          Length = 532

 Score = 31.6 bits (70), Expect = 7.2
 Identities = 27/81 (33%), Positives = 35/81 (43%)
 Frame = +1

Query: 319 RHRAERRQVHHLGSQGLQAPKVGERSSCSHQPCRQRHPSHTGPAWEVQECSAVDLLVPGP 498
           R + ER   HH  SQ L+A     R   S +PC+    S  G     +EC     LVPGP
Sbjct: 127 RRQRERHPHHH--SQPLRASPGSSREDIS-RPCQSWAGSRQGS----KECPGCAQLVPGP 179

Query: 499 VRVAREIGDLPEQGAHGPHRQ 561
              A  +   P   A G H++
Sbjct: 180 SSRAFGLEQPPLPEAPGRHKK 200

>Q58DH2:PISD_BOVIN Phosphatidylserine decarboxylase proenzyme - Bos taurus (Bovine)|
          Length = 416

 Score = 31.2 bits (69), Expect = 9.4
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = -3

Query: 545 CAPCSGKSPISLATRTGPGTRRSTAEHSWTSQA 447
           CAPC   SP  LA   G G+ RST   SW S A
Sbjct: 16  CAPCPFWSP-RLAGMQGTGSTRSTGSESWRSWA 47

>P10569:MYSC_ACACA Myosin IC heavy chain - Acanthamoeba castellanii (Amoeba)|
          Length = 1168

 Score = 31.2 bits (69), Expect = 9.4
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +3

Query: 555  SPGYPSTAGWPPPSVQA*LSLVSSRGYPRR*GSAPRSSGAP 677
            +PG P   G PPP           RG P   G+APR  GAP
Sbjct: 1075 APGGPGRGGAPPPGAGR-AGPPGGRGMPAPGGAAPRGRGAP 1114

>Q8IVL6:P3H3_HUMAN Prolyl 3-hydroxylase 3 precursor - Homo sapiens (Human)|
          Length = 736

 Score = 31.2 bits (69), Expect = 9.4
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = -1

Query: 481 GRQQSILGLPKQDQCERGAFGG----RAD-ESMKIVHPL*EPEDLASQGGGLVDVLRGAW 317
           GRQ++ L LP+ ++  +G+       RAD E  +      E ED A+  GGL + + G W
Sbjct: 228 GRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQQGAEEEEDGAASQGGLYEAIAGHW 287

Query: 316 LAV 308
           + V
Sbjct: 288 IQV 290

>P13186:KIN2_YEAST Serine/threonine-protein kinase KIN2 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 1147

 Score = 31.2 bits (69), Expect = 9.4
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +1

Query: 280 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPCRQRHPSHTGPAWEV 459
           HP R    QQ P   R     +       ++ PK   R+   + P  +R+PS+   + +V
Sbjct: 670 HPTR----QQEPLPEREPPTYMSKSNEISIKVPKSHSRTISDYIPSARRYPSYVPNSVDV 725

Query: 460 QECSAVDLLVPGPVRVA--REIGDLP 531
           ++  A +  +  P+R    ++  DLP
Sbjct: 726 KQKPAKNTTIAPPIRSVSQKQNSDLP 751


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 202,873,887
Number of extensions: 4480532
Number of successful extensions: 13281
Number of sequences better than 10.0: 10
Number of HSP's gapped: 13163
Number of HSP's successfully gapped: 11
Length of query: 416
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 300
Effective length of database: 68,868,219
Effective search space: 20660465700
Effective search space used: 20660465700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)