ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf110j03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054066.1| Oryza sativa (japonica cultivar-group) Os02g0638000 (Os02g0638000) mRNA, complete cds Length = 1289 Score = 83.8 bits (42), Expect = 2e-12 Identities = 60/66 (90%) Strand = Plus / Plus Query: 1189 gtcttttagggagcctgaaatcgtttgcttctgggatcagaaacttctggagaaatctgt 1248 ||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct: 986 gtctttttgggagcctgaaatcttttgcttctgggatcagaaatttttggagaaaactgt 1045 Query: 1249 aaattt 1254 ||||| Sbjct: 1046 gaattt 1051 Score = 46.1 bits (23), Expect = 0.36 Identities = 44/51 (86%) Strand = Plus / Plus Query: 187 cgtgctaccggacatggcgatggaaggcgcatgcggcgccgctgtcggctc 237 ||||| ||||||| || ||||||||| | ||||| ||||||||||| |||| Sbjct: 185 cgtgccaccggacttgccgatggaagtcacatgccgcgccgctgtccgctc 235 Score = 42.1 bits (21), Expect = 5.6 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 87 aatcctccattgccctcccagatgcaggcgttcgcgcgcctctcctcccccgccgcctcc 146 ||||| |||||||| |||| |||||| |||| ||||||||||| | || ||||||| ||| Sbjct: 86 aatccgccattgcc-tccccgatgcaagcgtccgcgcgcctctacaccgccgccgcatcc 144 Query: 147 a 147 | Sbjct: 145 a 145
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 83.8 bits (42), Expect = 2e-12 Identities = 60/66 (90%) Strand = Plus / Minus Query: 1189 gtcttttagggagcctgaaatcgtttgcttctgggatcagaaacttctggagaaatctgt 1248 ||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct: 25598251 gtctttttgggagcctgaaatcttttgcttctgggatcagaaatttttggagaaaactgt 25598192 Query: 1249 aaattt 1254 ||||| Sbjct: 25598191 gaattt 25598186 Score = 46.1 bits (23), Expect = 0.36 Identities = 44/51 (86%) Strand = Plus / Minus Query: 187 cgtgctaccggacatggcgatggaaggcgcatgcggcgccgctgtcggctc 237 ||||| ||||||| || ||||||||| | ||||| ||||||||||| |||| Sbjct: 25600299 cgtgccaccggacttgccgatggaagtcacatgccgcgccgctgtccgctc 25600249 Score = 42.1 bits (21), Expect = 5.6 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 87 aatcctccattgccctcccagatgcaggcgttcgcgcgcctctcctcccccgccgcctcc 146 ||||| |||||||| |||| |||||| |||| ||||||||||| | || ||||||| ||| Sbjct: 25600504 aatccgccattgcc-tccccgatgcaagcgtccgcgcgcctctacaccgccgccgcatcc 25600446 Query: 147 a 147 | Sbjct: 25600445 a 25600445
>dbj|AP005513.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22 Length = 157627 Score = 83.8 bits (42), Expect = 2e-12 Identities = 60/66 (90%) Strand = Plus / Minus Query: 1189 gtcttttagggagcctgaaatcgtttgcttctgggatcagaaacttctggagaaatctgt 1248 ||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct: 68298 gtctttttgggagcctgaaatcttttgcttctgggatcagaaatttttggagaaaactgt 68239 Query: 1249 aaattt 1254 ||||| Sbjct: 68238 gaattt 68233 Score = 46.1 bits (23), Expect = 0.36 Identities = 44/51 (86%) Strand = Plus / Minus Query: 187 cgtgctaccggacatggcgatggaaggcgcatgcggcgccgctgtcggctc 237 ||||| ||||||| || ||||||||| | ||||| ||||||||||| |||| Sbjct: 70346 cgtgccaccggacttgccgatggaagtcacatgccgcgccgctgtccgctc 70296 Score = 42.1 bits (21), Expect = 5.6 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 87 aatcctccattgccctcccagatgcaggcgttcgcgcgcctctcctcccccgccgcctcc 146 ||||| |||||||| |||| |||||| |||| ||||||||||| | || ||||||| ||| Sbjct: 70551 aatccgccattgcc-tccccgatgcaagcgtccgcgcgcctctacaccgccgccgcatcc 70493 Query: 147 a 147 | Sbjct: 70492 a 70492
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0010C01 Length = 186185 Score = 83.8 bits (42), Expect = 2e-12 Identities = 60/66 (90%) Strand = Plus / Minus Query: 1189 gtcttttagggagcctgaaatcgtttgcttctgggatcagaaacttctggagaaatctgt 1248 ||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct: 927 gtctttttgggagcctgaaatcttttgcttctgggatcagaaatttttggagaaaactgt 868 Query: 1249 aaattt 1254 ||||| Sbjct: 867 gaattt 862 Score = 46.1 bits (23), Expect = 0.36 Identities = 44/51 (86%) Strand = Plus / Minus Query: 187 cgtgctaccggacatggcgatggaaggcgcatgcggcgccgctgtcggctc 237 ||||| ||||||| || ||||||||| | ||||| ||||||||||| |||| Sbjct: 2975 cgtgccaccggacttgccgatggaagtcacatgccgcgccgctgtccgctc 2925 Score = 42.1 bits (21), Expect = 5.6 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Minus Query: 87 aatcctccattgccctcccagatgcaggcgttcgcgcgcctctcctcccccgccgcctcc 146 ||||| |||||||| |||| |||||| |||| ||||||||||| | || ||||||| ||| Sbjct: 3180 aatccgccattgcc-tccccgatgcaagcgtccgcgcgcctctacaccgccgccgcatcc 3122 Query: 147 a 147 | Sbjct: 3121 a 3121
>dbj|AK106548.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F09, full insert sequence Length = 1289 Score = 83.8 bits (42), Expect = 2e-12 Identities = 60/66 (90%) Strand = Plus / Plus Query: 1189 gtcttttagggagcctgaaatcgtttgcttctgggatcagaaacttctggagaaatctgt 1248 ||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct: 986 gtctttttgggagcctgaaatcttttgcttctgggatcagaaatttttggagaaaactgt 1045 Query: 1249 aaattt 1254 ||||| Sbjct: 1046 gaattt 1051 Score = 46.1 bits (23), Expect = 0.36 Identities = 44/51 (86%) Strand = Plus / Plus Query: 187 cgtgctaccggacatggcgatggaaggcgcatgcggcgccgctgtcggctc 237 ||||| ||||||| || ||||||||| | ||||| ||||||||||| |||| Sbjct: 185 cgtgccaccggacttgccgatggaagtcacatgccgcgccgctgtccgctc 235 Score = 42.1 bits (21), Expect = 5.6 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 87 aatcctccattgccctcccagatgcaggcgttcgcgcgcctctcctcccccgccgcctcc 146 ||||| |||||||| |||| |||||| |||| ||||||||||| | || ||||||| ||| Sbjct: 86 aatccgccattgcc-tccccgatgcaagcgtccgcgcgcctctacaccgccgccgcatcc 144 Query: 147 a 147 | Sbjct: 145 a 145
>dbj|AK103830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A15, full insert sequence Length = 1279 Score = 83.8 bits (42), Expect = 2e-12 Identities = 60/66 (90%) Strand = Plus / Plus Query: 1189 gtcttttagggagcctgaaatcgtttgcttctgggatcagaaacttctggagaaatctgt 1248 ||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct: 987 gtctttttgggagcctgaaatcttttgcttctgggatcagaaatttttggagaaaactgt 1046 Query: 1249 aaattt 1254 ||||| Sbjct: 1047 gaattt 1052 Score = 46.1 bits (23), Expect = 0.36 Identities = 44/51 (86%) Strand = Plus / Plus Query: 187 cgtgctaccggacatggcgatggaaggcgcatgcggcgccgctgtcggctc 237 ||||| ||||||| || ||||||||| | ||||| ||||||||||| |||| Sbjct: 186 cgtgccaccggacttgccgatggaagtcacatgccgcgccgctgtccgctc 236 Score = 42.1 bits (21), Expect = 5.6 Identities = 52/61 (85%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 87 aatcctccattgccctcccagatgcaggcgttcgcgcgcctctcctcccccgccgcctcc 146 ||||| |||||||| |||| |||||| |||| ||||||||||| | || ||||||| ||| Sbjct: 87 aatccgccattgcc-tccccgatgcaagcgtccgcgcgcctctacaccgccgccgcatcc 145 Query: 147 a 147 | Sbjct: 146 a 146
>ref|NM_001050478.1| Oryza sativa (japonica cultivar-group) Os01g0692600 (Os01g0692600) mRNA, complete cds Length = 2216 Score = 46.1 bits (23), Expect = 0.36 Identities = 26/27 (96%) Strand = Plus / Plus Query: 117 ttcgcgcgcctctcctcccccgccgcc 143 ||||||| ||||||||||||||||||| Sbjct: 74 ttcgcgcacctctcctcccccgccgcc 100
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 124 gcctctcctcccccgccgcctcc 146 ||||||||||||||||||||||| Sbjct: 161188 gcctctcctcccccgccgcctcc 161166
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 46.1 bits (23), Expect = 0.36 Identities = 26/27 (96%) Strand = Plus / Plus Query: 117 ttcgcgcgcctctcctcccccgccgcc 143 ||||||| ||||||||||||||||||| Sbjct: 28571497 ttcgcgcacctctcctcccccgccgcc 28571523
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 46.1 bits (23), Expect = 0.36 Identities = 26/27 (96%) Strand = Plus / Plus Query: 117 ttcgcgcgcctctcctcccccgccgcc 143 ||||||| ||||||||||||||||||| Sbjct: 97936 ttcgcgcacctctcctcccccgccgcc 97962
>ref|XM_630640.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0188882) mRNA, complete cds Length = 2082 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 930 actgtatcaaaacaagcagaaa 951 |||||||||||||||||||||| Sbjct: 1438 actgtatcaaaacaagcagaaa 1459
>gb|AC118456.2| Homo sapiens chromosome 5 clone CTD-2288B6, complete sequence Length = 121822 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 931 ctgtatcaaaacaagcagaaat 952 |||||||||||||||||||||| Sbjct: 88845 ctgtatcaaaacaagcagaaat 88866
>dbj|AK085940.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830032D04 product:unclassifiable, full insert sequence Length = 2916 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 492 cagtcaaggccagaggaggaga 513 |||||||||||||||||||||| Sbjct: 2694 cagtcaaggccagaggaggaga 2715
>emb|AL672220.6| Human DNA sequence from clone RP11-17C2 on chromosome 1 Contains a CpG island, complete sequence Length = 104417 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1364 tgccccctgtttagcatttttg 1385 |||||||||||||||||||||| Sbjct: 18053 tgccccctgtttagcatttttg 18032
>emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chromosome 4, complete sequence Length = 186686 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 492 cagtcaaggccagaggaggaga 513 |||||||||||||||||||||| Sbjct: 61101 cagtcaaggccagaggaggaga 61080
>emb|AL670446.8| Mouse DNA sequence from clone RP23-291H3 on chromosome 4, complete sequence Length = 171444 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 492 cagtcaaggccagaggaggaga 513 |||||||||||||||||||||| Sbjct: 117887 cagtcaaggccagaggaggaga 117866
>gb|CP000469.1| Shewanella sp. ANA-3, complete genome Length = 4972204 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 tgcggcgccgctgtcggctcc 238 ||||||||||||||||||||| Sbjct: 4074562 tgcggcgccgctgtcggctcc 4074542
>ref|XM_001220837.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01617) mRNA, complete cds Length = 3033 Score = 42.1 bits (21), Expect = 5.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 113 ggcgttcgcgcgcctctcctcccccgccgcctccagaaagg 153 ||||| ||||||| ||| |||| | |||||||||||||||| Sbjct: 2883 ggcgtgcgcgcgcttctgctcctcggccgcctccagaaagg 2843
>ref|XM_629524.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0184478) mRNA, complete cds Length = 2310 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 935 atcaaaacaagcagaaattga 955 ||||||||||||||||||||| Sbjct: 1128 atcaaaacaagcagaaattga 1148
>gb|AC048334.21| Homo sapiens 3 BAC RP11-572C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 215719 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 agcttcaggagacagctgaag 483 ||||||||||||||||||||| Sbjct: 56190 agcttcaggagacagctgaag 56210
>emb|AL731826.12| Mouse DNA sequence from clone RP23-123O12 on chromosome 2, complete sequence Length = 194661 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 atatccaaaaatgaaaggaag 290 ||||||||||||||||||||| Sbjct: 55086 atatccaaaaatgaaaggaag 55066 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 269,005,520 Number of extensions: 14353726 Number of successful extensions: 325514 Number of sequences better than 10.0: 21 Number of HSP's gapped: 325514 Number of HSP's successfully gapped: 33 Length of query: 1462 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1439 Effective length of database: 18,503,978,556 Effective search space: 26627225142084 Effective search space used: 26627225142084 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
