ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf110f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK070285:Os07g0585500 30 1.4
2AK070390:Os01g0935000 30 1.9
3Os06g0625300:Os06g0625300 29 3.2
4AK110580:Os04g0400800 29 3.2
5AK110289: 29 3.2
6Os02g0731400:Os02g0731400 27 9.2
7AK110145:Os09g0535200 27 9.2

>AK070285:Os07g0585500 |
          Length = 126
 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +1

Query: 175 GGVPAGRLPSGRVPTAGAGAGLPSPGIP 258
           G +PA  +P+GR+P   AGAGLP+  +P
Sbjct: 41  GRLPAAGVPTGRLP---AGAGLPTGWVP 65



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 150 LHSKGIQGRRSTRRQATLRPGTHRRGRGRATLP 248
           + S   +GRR  R+   LRP T RR    A LP
Sbjct: 6   IRSPDTRGRRRRRKDELLRPATSRRRPAAARLP 38



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>AK070390:Os01g0935000 |
          Length = 476

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 257 GIPGEGSPAPAPAVGTRPEGSLPAGTPPSLDTLAV 153
           G+P +  PAP  AV  + + SLP    PS + +A+
Sbjct: 36  GVPSDPPPAPPTAVKKKKKRSLPGTPDPSAEVVAL 70



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>Os06g0625300:Os06g0625300 |
          Length = 667

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 251 PGEGSPAPAPAVGTRPEGSLPA 186
           PG  SPAPAPAV   P  ++P+
Sbjct: 251 PGPPSPAPAPAVSAPPPPAVPS 272



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>AK110580:Os04g0400800 |
          Length = 282

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 242 GSPAPAPAVGTRPEGSLPAGTPPSLD 165
           G   PAPAV   P  +  A TPP +D
Sbjct: 87  GGTTPAPAVANPPPAATVAATPPKVD 112



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>AK110289: |
          Length = 709

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 175 GGVPAGRLPSGRVPTAGAGAGLPSPGIP 258
           G VP G  P+G VP A   A +P PG+P
Sbjct: 469 GAVPGGYPPAGVVPAAAPPA-VPPPGVP 495



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>Os02g0731400:Os02g0731400 |
          Length = 172

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 147 CLHSKGIQGRRSTRRQATLRPGTH 218
           C   KG++  RS R + TLR GTH
Sbjct: 128 CTVPKGVRKMRSGRDKVTLRKGTH 151



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>AK110145:Os09g0535200 |
          Length = 861

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 236 PAPAPAVGTRPEGSLPAGTPP 174
           PAPAP V T P  + PA  PP
Sbjct: 201 PAPAPPVPTPPAPTPPADVPP 221


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 12,195,388
Number of extensions: 228291
Number of successful extensions: 1327
Number of sequences better than 10.0: 7
Number of HSP's gapped: 1320
Number of HSP's successfully gapped: 8
Length of query: 220
Length of database: 15,399,855
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,515,878
Effective search space: 1416452994
Effective search space used: 1416452994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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