ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf107f11 |
|---|---|
| Clone Library Name | barley_pub |
>O60240:PLIN_HUMAN Perilipin - Homo sapiens (Human)| Length = 522 Score = 35.8 bits (81), Expect = 0.19 Identities = 29/69 (42%), Positives = 35/69 (50%) Frame = -1 Query: 401 PPARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPASRGVGPGDEL 222 PPA RREA R++ S G PA PR A PRRS + ++PG P GPG E Sbjct: 422 PPAEVERREAERRASGAPSAGPEPA--PR-LAQPRRSLR--SAQSPGAPP----GPGLED 472 Query: 221 EEKASSTPR 195 E + PR Sbjct: 473 EVATPAAPR 481
>O60548:FOXD2_HUMAN Forkhead box protein D2 - Homo sapiens (Human)| Length = 497 Score = 33.9 bits (76), Expect = 0.73 Identities = 22/70 (31%), Positives = 27/70 (38%) Frame = -1 Query: 440 PPWPVPNHHPHIGPPARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPG 261 PP P P+ HPH P A A C+++ A P G P S AP Sbjct: 281 PPGPAPHPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGP--PTASVFAGAGSAPA 338 Query: 260 RPASRGVGPG 231 + G GPG Sbjct: 339 PAPASGSGPG 348
>Q9NXX6:NSE4A_HUMAN Non-SMC element 4 homolog A - Homo sapiens (Human)| Length = 385 Score = 33.5 bits (75), Expect = 0.95 Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Frame = -1 Query: 404 GPPARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPASRGVGP--- 234 GP R R+ R R SR SP PR RR A REAP RP+ P Sbjct: 9 GPEGRGRGRDPHRDRTRSRSRSRSPLS-PRS----RRGSARERREAPERPSLEDTEPSDS 63 Query: 233 GDELEEKAS 207 GDE+ + AS Sbjct: 64 GDEMMDPAS 72
>O60279:SUSD5_HUMAN Sushi domain-containing protein 5 - Homo sapiens (Human)| Length = 815 Score = 33.1 bits (74), Expect = 1.2 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = -1 Query: 413 PHIGPPARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPAS 249 P P V R R+ R+T+ S+P P G PRRS +R +PG P S Sbjct: 83 PSAAPFGTEVSRCPARRRSRVTAASSAPQRRPPGVRRPRRS-GSASRASPGSPRS 136
>Q4L6Y7:RUVA_STAHJ Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| haemolyticus (strain JCSC1435) Length = 201 Score = 32.7 bits (73), Expect = 1.6 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E M ++ L +FPG G Sbjct: 80 GIGPKSALAILATSTPNEVKMAIENENDAYLTKFPGIG 117
>Q91X05:PODO_MOUSE Podocin - Mus musculus (Mouse)| Length = 385 Score = 32.7 bits (73), Expect = 1.6 Identities = 21/51 (41%), Positives = 27/51 (52%) Frame = -1 Query: 395 ARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPASRG 243 AR REA +S R +SR A RG+ R AG R++ GR A+RG Sbjct: 5 ARSSSREAHGRSSRSSSRDDKKAKAGRGSRGRARPDAGAERQSTGRTATRG 55
>Q62407:SPEG_MOUSE Striated muscle-specific serine/threonine protein kinase - Mus| musculus (Mouse) Length = 3262 Score = 32.3 bits (72), Expect = 2.1 Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = -1 Query: 368 RQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPASRG-VGPGDELEEKASSTPRE 192 R S TSR SPA P S AG + + PGRP SRG VG + E R Sbjct: 543 RPSTPKTSRAVSPAA----TQPPPPSGAGKSGDEPGRPRSRGPVGRTEPGEGPQQEIKRR 598 Query: 191 ETMRLDQWRSRQLVRFP 141 + L + R+ Q R P Sbjct: 599 DQFPLTRSRAIQECRSP 615
>Q8CS90:RUVA_STAES Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| epidermidis (strain ATCC 12228) Length = 200 Score = 32.3 bits (72), Expect = 2.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L ASSTP E + ++ L +FPG G Sbjct: 79 GIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIG 116
>Q5HNQ9:RUVA_STAEQ Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| epidermidis (strain ATCC 35984 / RP62A) Length = 200 Score = 32.3 bits (72), Expect = 2.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L ASSTP E + ++ L +FPG G Sbjct: 79 GIGPKSALAILASSTPHEVKLAIENENDAYLTQFPGIG 116
>Q15772:SPEG_HUMAN Striated muscle preferentially expressed protein kinase - Homo| sapiens (Human) Length = 3223 Score = 31.6 bits (70), Expect = 3.6 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = -1 Query: 368 RQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPASRGVGPGDELEEKASSTPREE 189 R S TSR SPA A P S A + PGRP SR GP E P++E Sbjct: 538 RPSTPKTSRAVSPAA----AQPPSPSSAEKPGDEPGRPRSR--GPAGRTE--PGEGPQQE 589 Query: 188 TMRLDQW---RSRQL 153 R DQ+ RSR + Sbjct: 590 VRRRDQFPLTRSRAI 604
>Q9C0H9:SNIP_HUMAN p130Cas-associated protein - Homo sapiens (Human)| Length = 1055 Score = 31.6 bits (70), Expect = 3.6 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Frame = -1 Query: 440 PPWPVPNHHPHIGPPAR--HVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREA 267 P P P H P+ GPP+R VR+ + S + SP G R A + A + Sbjct: 357 PGGPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKTRSAGSASTAGAPPSELF 416 Query: 266 PGRPASRGVGPGDELEEKASST 201 PG VG G + K + T Sbjct: 417 PGPGERSLVGFGPPVPAKDTET 438
>P68907:PZRN3_RAT PDZ domain-containing RING finger protein 3 - Rattus norvegicus| (Rat) Length = 1062 Score = 31.6 bits (70), Expect = 3.6 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 269 LPSSAQHRICGGELLLEVIRQESCPSRSSGRIAAQ 373 L + H C G +L V+++ SCPSR GR++A+ Sbjct: 29 LTTPCGHVFCAGCVLPWVVQEGSCPSRCRGRLSAK 63
>Q9UL51:HCN2_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated| channel 2 - Homo sapiens (Human) Length = 889 Score = 30.8 bits (68), Expect = 6.2 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Frame = -1 Query: 440 PPWPVPNH-HPHIGPPARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRSYAGLTREAP 264 PP P P P PPA A ++ R + G PA G ALP R + +R Sbjct: 762 PPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLS 821 Query: 263 GRPAS---RGVGPGDELEEKASSTPR 195 S GP +SSTPR Sbjct: 822 ASQPSLPHGAPGPAASTRPASSSTPR 847
>Q10586:DBP_HUMAN D site-binding protein - Homo sapiens (Human)| Length = 325 Score = 30.8 bits (68), Expect = 6.2 Identities = 28/64 (43%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = -1 Query: 443 LPPWPVPNHHPHIGP-PARHVRREAGRQSCRMTSRGSSPAG*PRGAALPRRS--YAGLT- 276 LPP P P P P PAR G SC S SSP P AAL S AGLT Sbjct: 128 LPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTS 187 Query: 275 REAP 264 R+ P Sbjct: 188 RDTP 191
>P50768:VE2_HPV22 Regulatory protein E2 - Human papillomavirus type 22| Length = 436 Score = 30.4 bits (67), Expect = 8.1 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Frame = -1 Query: 413 PHIGPPARHVRREAGRQSC---RMTSRGSSPAG*PRGAALPRRSYAGLTREAPGRPASRG 243 P I R RRE RQ R +R S + RG RRS + + E+P R G Sbjct: 240 PTITTIRRQKRRERQRQETPTRRRKTRSRSRSTEQRGGRATRRSLSRESAESPRRGGRGG 299 Query: 242 VGPGDELEEKASSTPRE 192 GP ++ S RE Sbjct: 300 GGPLTRSRSRSRSRTRE 316
>P66750:RUVA_STAAW Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| aureus (strain MW2) Length = 200 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E ++ L +FPG G Sbjct: 79 GIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIG 116
>Q6G8S7:RUVA_STAAS Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| aureus (strain MSSA476) Length = 200 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E ++ L +FPG G Sbjct: 79 GIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIG 116
>Q6GG62:RUVA_STAAR Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| aureus (strain MRSA252) Length = 200 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E ++ L +FPG G Sbjct: 79 GIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIG 116
>P66749:RUVA_STAAN Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| aureus (strain N315) Length = 200 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E ++ L +FPG G Sbjct: 79 GIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIG 116
>P66748:RUVA_STAAM Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| aureus (strain Mu50 / ATCC 700699) Length = 200 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E ++ L +FPG G Sbjct: 79 GIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIG 116
>Q5HFC1:RUVA_STAAC Holliday junction ATP-dependent DNA helicase ruvA - Staphylococcus| aureus (strain COL) Length = 200 Score = 30.4 bits (67), Expect = 8.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 245 GVGPGDELEEKASSTPREETMRLDQWRSRQLVRFPGYG 132 G+GP L A+STP E ++ L +FPG G Sbjct: 79 GIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIG 116
>Q69ZS0:PZRN3_MOUSE PDZ domain-containing RING finger protein 3 - Mus musculus (Mouse)| Length = 1063 Score = 30.4 bits (67), Expect = 8.1 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +2 Query: 269 LPSSAQHRICGGELLLEVIRQESCPSRSSGRIAAQ 373 L + H C G +L V+++ SCP+R GR++A+ Sbjct: 29 LTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAK 63
>Q9UPQ7:PZRN3_HUMAN PDZ domain-containing RING finger protein 3 - Homo sapiens (Human)| Length = 1066 Score = 30.4 bits (67), Expect = 8.1 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +2 Query: 269 LPSSAQHRICGGELLLEVIRQESCPSRSSGRIAAQ 373 L + H C G +L V+++ SCP+R GR++A+ Sbjct: 29 LTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAK 63
>Q2TBI1:NSE4A_BOVIN Non-SMC element 4 homolog A - Bos taurus (Bovine)| Length = 382 Score = 30.4 bits (67), Expect = 8.1 Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = -1 Query: 401 PPARHVRREAGRQSCRMTSRGSSPA--G*PRGAALPRRSYAGLTREAPGRPASRGVGPGD 228 P R R+ R R SR SP G RGAA RR EAP RP P D Sbjct: 10 PEGRGRGRDPHRDRTRSRSRSRSPLSPGSRRGAAPERR-------EAPERPGLEDTEPSD 62 Query: 227 ELEEKASSTPREE 189 +E EE Sbjct: 63 SGDEMIDPASLEE 75
>P20811:ICAL_BOVIN Calpastatin - Bos taurus (Bovine)| Length = 705 Score = 30.4 bits (67), Expect = 8.1 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = -1 Query: 368 RQSCRMTSRGSSPAG*PRGAA--LPRRSYAGLTREAPGRPASRGVGPGDELEEKASSTPR 195 +QS +SPA P A +PR S L P ++G+ P D +E A S P+ Sbjct: 372 KQSKPTEKTEASPAAAPYPVAEDVPRTSMCSLQSAPPTAAPAKGMVPDDAVEALAGSLPK 431 Query: 194 EE 189 +E Sbjct: 432 KE 433 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 146,696,690 Number of extensions: 3408345 Number of successful extensions: 11969 Number of sequences better than 10.0: 25 Number of HSP's gapped: 11915 Number of HSP's successfully gapped: 25 Length of query: 259 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 148 Effective length of database: 70,239,694 Effective search space: 10395474712 Effective search space used: 10395474712 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
