ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf115k03 |
|---|---|
| Clone Library Name | barley_pub |
>Q6DJE4:CPSF5_XENLA Cleavage and polyadenylation specificity factor 5 - Xenopus laevis| (African clawed frog) Length = 227 Score = 100 bits (248), Expect(2) = 8e-27 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVQQDWVIDDCIGNWWRPNFEP 155 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 156 PQYPYIPAHITKPK 169 Score = 41.2 bits (95), Expect(2) = 8e-27 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 169 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>Q7T3C6:CPSF5_DANRE Cleavage and polyadenylation specificity factor 5 - Danio rerio| (Zebrafish) (Brachydanio rerio) Length = 228 Score = 100 bits (248), Expect(2) = 8e-27 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 38 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 98 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVKQDWVIDDCIGNWWRPNFEP 156 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 157 PQYPYIPAHITKPK 170 Score = 41.2 bits (95), Expect(2) = 8e-27 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 170 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 206
>Q4KM65:CPSF5_RAT Cleavage and polyadenylation specificity factor 5 - Rattus| norvegicus (Rat) Length = 227 Score = 98.6 bits (244), Expect(2) = 2e-26 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 156 PQYPYIPAHITKPK 169 Score = 41.2 bits (95), Expect(2) = 2e-26 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 169 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>Q5RAI8:CPSF5_PONPY Cleavage and polyadenylation specificity factor 5 - Pongo pygmaeus| (Orangutan) Length = 227 Score = 98.6 bits (244), Expect(2) = 2e-26 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 156 PQYPYIPAHITKPK 169 Score = 41.2 bits (95), Expect(2) = 2e-26 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 169 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>Q9CQF3:CPSF5_MOUSE Cleavage and polyadenylation specificity factor 5 - Mus musculus| (Mouse) Length = 227 Score = 98.6 bits (244), Expect(2) = 2e-26 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 156 PQYPYIPAHITKPK 169 Score = 41.2 bits (95), Expect(2) = 2e-26 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 169 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>O43809:CPSF5_HUMAN Cleavage and polyadenylation specificity factor 5 - Homo sapiens| (Human) Length = 227 Score = 98.6 bits (244), Expect(2) = 2e-26 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 156 PQYPYIPAHITKPK 169 Score = 41.2 bits (95), Expect(2) = 2e-26 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 169 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>Q3ZCA2:CPSF5_BOVIN Cleavage and polyadenylation specificity factor 5 - Bos taurus| (Bovine) Length = 227 Score = 98.6 bits (244), Expect(2) = 2e-26 Identities = 52/134 (38%), Positives = 72/134 (53%) Frame = +1 Query: 157 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 336 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 337 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 516 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 517 RPFPYPPPNTRASK 558 +PY P + K Sbjct: 156 PQYPYIPAHITKPK 169 Score = 41.2 bits (95), Expect(2) = 2e-26 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 660 KECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNA 770 KE KLFLV+L F VP+N KL+A PL +++DNA Sbjct: 169 KEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNA 205
>O14994:SYN3_HUMAN Synapsin-3 - Homo sapiens (Human)| Length = 580 Score = 35.0 bits (79), Expect = 0.41 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = +3 Query: 264 GSRAPD-LRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQA--CRARSPRPE 413 G AP LRPW P ++ SP + A G +L P P PPQ +A+SP+P+ Sbjct: 400 GGTAPSPLRPWAPQIKSAKSPGQ-AQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451 Score = 32.7 bits (73), Expect = 2.0 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = +3 Query: 297 PAGRAVGSPA--RAAPAGQELLLPAPGRP--------PQACRARSPRPETQALQQASG*G 446 P + GSP+ R +P GQ+ L P G P PQ RA S QA + + Sbjct: 448 PQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLA 507 Query: 447 SKRRPPLADR 476 S+ RPP+ R Sbjct: 508 SQPRPPVQGR 517
>Q8IYR2:SMYD4_HUMAN SET and MYND domain-containing protein 4 - Homo sapiens (Human)| Length = 804 Score = 34.7 bits (78), Expect = 0.54 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = +1 Query: 181 YYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVL--LLQVRNS 354 Y G +RP + + A R A F TC+ + + + G+P L + +R + Sbjct: 91 YSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINIAQTHGYPERLQPKIMLRKA 150 Query: 355 SFLLPGGRLRPAEQDLQGLKRKLSSKLAAED 447 L+ GRL+ A Q + L+R ++ A D Sbjct: 151 ECLVALGRLQEASQTISDLERNFTATPALAD 181
>P15941:MUC1_HUMAN Mucin-1 precursor - Homo sapiens (Human)| Length = 1255 Score = 34.3 bits (77), Expect = 0.70 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D K AP TAP G AP +T S+P+ +P Sbjct: 109 GSTTPPAHDVTSAPDNKPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 168 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 169 GSTAPPAHGVTSAPDTRPAPGSTA 192 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 169 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 228 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 229 GSTAPPAHGVTSAPDTRPAPGSTA 252 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 229 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 288 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 289 GSTAPPAHGVTSAPDTRPAPGSTA 312 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 289 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 348 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 349 GSTAPPAHGVTSAPDTRPAPGSTA 372 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 349 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 408 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 409 GSTAPPAHGVTSAPDTRPAPGSTA 432 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 409 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 468 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 469 GSTAPPAHGVTSAPDTRPAPGSTA 492 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 469 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 528 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 529 GSTAPPAHGVTSAPDTRPAPGSTA 552 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 529 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 588 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 589 GSTAPPAHGVTSAPDTRPAPGSTA 612 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 589 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 648 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 649 GSTAPPAHGVTSAPDTRPAPGSTA 672 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 649 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 708 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 709 GSTAPPAHGVTSAPDTRPAPGSTA 732 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 709 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 768 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 769 GSTAPPAHGVTSAPDTRPAPGSTA 792 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 769 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 828 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 829 GSTAPPAHGVTSAPDTRPAPGSTA 852 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Frame = +1 Query: 1 GSTSPRAPSFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVAT-------ESSPEQQPEV 159 GST+P A + D + AP TAP G AP +T S+P+ +P Sbjct: 829 GSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAP 888 Query: 160 -AIYPLCRYYFGAKDARPCAGETA 228 + P A D RP G TA Sbjct: 889 GSTAPPAHGVTSAPDTRPAPGSTA 912
>O95602:RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 - Homo sapiens (Human)| Length = 1717 Score = 33.5 bits (75), Expect = 1.2 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +1 Query: 313 SGHPHVLLLQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGM 492 S HP+ LL R +FL +++ A + L KL +E+RNG W G + M Sbjct: 1077 SKHPNTLL---RRGAFLSYSQKIQEAVKAL---------KLESENRNGRRPWDSGRMLRM 1124 Query: 493 WWRSEFDAR 519 W+ + ++R Sbjct: 1125 WYELDEESR 1133
>Q8CHC4:SYNJ1_MOUSE Synaptojanin-1 - Mus musculus (Mouse)| Length = 1574 Score = 32.7 bits (73), Expect = 2.0 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Frame = +3 Query: 282 LRPWRPAG-RAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRR 458 L P RP R V PAR AP P RPP ARSP P A ++ G G+ Sbjct: 1100 LEPKRPPPPRPVAPPARPAP---------PQRPPPPSGARSPAP---ARKEFGGVGAPPS 1147 Query: 459 PPLADRRV 482 P +A R + Sbjct: 1148 PGVARREI 1155
>Q791T5:MTCH1_MOUSE Mitochondrial carrier homolog 1 - Mus musculus (Mouse)| Length = 389 Score = 32.3 bits (72), Expect = 2.7 Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 10/62 (16%) Frame = +3 Query: 264 GSRAPDLRPWRP------AGRAVGSPAR-AAPAGQELLLPAPGR-PPQACRA--RSPRPE 413 G+ P++ PW P AG G+ AR APAG E A R PP A RA R PRP Sbjct: 2 GASDPEVAPWAPGGAAGMAGAGAGAGARGGAPAGVE----ARARDPPPAHRAHPRHPRPA 57 Query: 414 TQ 419 Q Sbjct: 58 AQ 59
>Q5TAA0:TTC22_HUMAN Tetratricopeptide repeat protein 22 - Homo sapiens (Human)| Length = 569 Score = 32.0 bits (71), Expect = 3.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 500 DQNSMPGHFHIRLQTHVHPRQAVPNR 577 D + +PGHFH+ +Q + PR P R Sbjct: 17 DLDYLPGHFHLEMQLNFEPRSPAPQR 42
>Q86UW7:CAPS2_HUMAN Calcium-dependent secretion activator 2 - Homo sapiens (Human)| Length = 1296 Score = 32.0 bits (71), Expect = 3.5 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Frame = +3 Query: 309 AVGSPARAAPAG-QELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPPLADRRVH 485 A GS RA PA +E APGR ARS P L + ++ +RR+ Sbjct: 25 AAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIR 84 Query: 486 WHVVEIRIRCQAISISASKHTCIQGKQ 566 + +RC A +A + T + +Q Sbjct: 85 LQLYVFVVRCIAYPFNAKQPTDMARRQ 111
>Q9Y3Q4:HCN4_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated| channel 4 - Homo sapiens (Human) Length = 1203 Score = 28.1 bits (61), Expect(2) = 3.7 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +1 Query: 28 FSPTTDQKRAPNPTAPACIGE---RVDMGLEMAPVATESSPEQQPE 156 F P R+P+ ++P +G+ + +GL P++T +P +QPE Sbjct: 958 FLPPPPSSRSPS-SSPGQLGQPPGELSLGLATGPLSTPETPPRQPE 1002 Score = 22.3 bits (46), Expect(2) = 3.7 Identities = 13/40 (32%), Positives = 17/40 (42%) Frame = +3 Query: 261 RGSRAPDLRPWRPAGRAVGSPARAAPAGQELLLPAPGRPP 380 RG +P P +P RA+ + LLLP PP Sbjct: 1022 RGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPP 1061
>P52506:UNG_PRVIF Uracil-DNA glycosylase - Pseudorabies virus (strain| Indiana-Funkhauser / Becker) (PRV) Length = 315 Score = 31.6 bits (70), Expect = 4.6 Identities = 18/47 (38%), Positives = 20/47 (42%) Frame = +3 Query: 300 AGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG 440 A A + A AAPAG P RPP A R P A A+G Sbjct: 28 ASNAATAAAAAAPAGAGAGASKPARPPAAARPAKGTPAASAATTATG 74
>P10569:MYSC_ACACA Myosin IC heavy chain - Acanthamoeba castellanii (Amoeba)| Length = 1168 Score = 31.6 bits (70), Expect = 4.6 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +3 Query: 297 PAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRP 410 P GR + +P AAP G+ P G PP R +P P Sbjct: 1095 PGGRGMPAPGGAAPRGRGAPPPGAGGPPGGGRGGAPPP 1132
>P53410:ISL2_CHICK Insulin gene enhancer protein ISL-2 - Gallus gallus (Chicken)| Length = 319 Score = 31.6 bits (70), Expect = 4.6 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +3 Query: 297 PAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPPLADR 476 P G A P AP L P PGRPP PRP++ + + ++ R L ++ Sbjct: 110 PDGAAARGPRSPAPPPAHLAEPVPGRPP------GPRPQSHKAAEKT---TRVRTVLNEK 160 Query: 477 RVH 485 ++H Sbjct: 161 QLH 163
>P52507:UNG_PRVKA Uracil-DNA glycosylase - Pseudorabies virus (strain Kaplan) (PRV)| Length = 316 Score = 31.2 bits (69), Expect = 6.0 Identities = 19/55 (34%), Positives = 22/55 (40%) Frame = +3 Query: 300 AGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPP 464 A A + A AAPAG P RP A R P A A+G + PP Sbjct: 29 ASNAATAAAAAAPAGAGAGASKPARPSAAARPAKGTPAASAATTATGADASAPPP 83
>Q16849:PTPRN_HUMAN Receptor-type tyrosine-protein phosphatase-like N precursor - Homo| sapiens (Human) Length = 979 Score = 31.2 bits (69), Expect = 6.0 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 270 RAPDLRPW--RPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRP 410 R P LRP RP R+ +P R PAG+ LL P A + R P+P Sbjct: 112 RIPRLRPPEPRPRDRSGLAPKRPGPAGELLLQDIPTGSAPAAQHRLPQP 160
>P08392:ICP4_HHV11 Trans-acting transcriptional protein ICP4 - Human herpesvirus 1| (strain 17) (HHV-1) (Human herpes simplex virus 1) Length = 1298 Score = 31.2 bits (69), Expect = 6.0 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +3 Query: 306 RAVG-SPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRR 458 RAVG P+ AAPA P PG PP + A PR + ++G +RR Sbjct: 218 RAVGRGPSSAAPAAPGRTPPPPGPPPLSEAAPKPRAAARTPAASAGRIERRR 269
>Q9BYE2:TMPSD_HUMAN Transmembrane protease, serine 13 - Homo sapiens (Human)| Length = 581 Score = 30.8 bits (68), Expect = 7.8 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +3 Query: 297 PAGRAVGSPARAAPAGQELLLPAPGR--PPQACRARSPRPETQALQQASG*GSKRR 458 P GRA SPA+A+PAG +PGR P QA AR+ + +SG S R Sbjct: 50 PPGRA--SPAQASPAGTPPGRASPGRASPAQASPARASPALASLSRSSSGRSSSAR 103
>Q99PI5:LPIN2_MOUSE Lipin-2 - Mus musculus (Mouse)| Length = 893 Score = 30.8 bits (68), Expect = 7.8 Identities = 22/56 (39%), Positives = 27/56 (48%) Frame = +2 Query: 629 TVASETCTICKGMRKAVLGQVAHGSPVRGAEEPQAPSRAPVPDSRQCSGLLDASSV 796 TV TCTI K +A+ Q+ S E P++P AP Q S LLDA V Sbjct: 316 TVEDTTCTIVKPKPRALCKQL---SDAASTELPESPLEAP-----QISSLLDADPV 363
>Q73VV4:IF2_MYCPA Translation initiation factor IF-2 - Mycobacterium paratuberculosis| Length = 925 Score = 30.8 bits (68), Expect = 7.8 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 297 PAGRAVG-SPARAAPAGQELLLPAPGRPPQACRARSPRP 410 PA +A +PAR PA PAPG+P + PRP Sbjct: 118 PAAQATPEAPARPGPAAARPSAPAPGQPKPPAPGQPPRP 156
>Q99501:GA2L1_HUMAN GAS2-like protein 1 - Homo sapiens (Human)| Length = 681 Score = 30.8 bits (68), Expect = 7.8 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%) Frame = +1 Query: 13 PRAPSFSPT-TDQKRAPNPTAPACIGERVDMGLEMAPVA---TESSPEQQP----EVAIY 168 PR +FSP +P P +P ER EM PV+ T+ PE P ++ + Sbjct: 286 PRVCTFSPQRVSPTTSPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRPRDQLPPH 345 Query: 169 PLCRYYFGAKDARPCAGET 225 P R Y G D+ + ++ Sbjct: 346 PRSRRYSGDSDSSASSAQS 364
>Q3UFT3:FA59A_MOUSE Protein FAM59A - Mus musculus (Mouse)| Length = 876 Score = 30.8 bits (68), Expect = 7.8 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Frame = +1 Query: 4 STSPRAP--SFSPTTDQKRAPNPTAPACIGERVDMGLEMAPVATESSPEQQPEVAIYPLC 177 STSP P + P Q R+P+PT GL +++SP V+ YP Sbjct: 544 STSPSIPPRTVKPVRPQTRSPSPTL-----SYYSSGLHNIITQSDTSPPNSAPVSCYPCT 598 Query: 178 RYYFGAKDARPCAGETAAD 234 R + D + G +A+ Sbjct: 599 RVKSDSVDPKSPFGSPSAE 617
>P27884:CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A -| Oryctolagus cuniculus (Rabbit) Length = 2424 Score = 30.8 bits (68), Expect = 7.8 Identities = 21/56 (37%), Positives = 29/56 (51%) Frame = +3 Query: 264 GSRAPDLRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQ 431 G R P + G +V A PAG + LLP P R QA RAR P+ +++Q+ Sbjct: 2309 GPREPLAQDSPGRGPSVCLARAARPAGPQRLLPGP-RTGQAPRARLPQKPARSVQR 2363
>P18090:ADRB1_RAT Beta-1 adrenergic receptor - Rattus norvegicus (Rat)| Length = 466 Score = 30.8 bits (68), Expect = 7.8 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = +3 Query: 282 LRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRP 461 LR +R A + V + + + L P RPP + SP P A A+G SKRRP Sbjct: 245 LRVFREAQKQV----KKIDSCERRFLTGPPRPPSPAPSPSPGPPRPADSLANGRSSKRRP 300 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 152,209,123 Number of extensions: 3430816 Number of successful extensions: 13007 Number of sequences better than 10.0: 29 Number of HSP's gapped: 12858 Number of HSP's successfully gapped: 57 Length of query: 301 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 188 Effective length of database: 69,691,104 Effective search space: 13101927552 Effective search space used: 13101927552 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
