| Clone Name | FLbaf115d07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056899.1| Oryza sativa (japonica cultivar-group) Os03g0415200 (Os03g0415200) mRNA, complete cds Length = 1639 Score = 688 bits (347), Expect = 0.0 Identities = 800/951 (84%) Strand = Plus / Plus Query: 354 gggcagtggtgcttcgactgcgagccggagctcgccggctcccactgcgtccgctccgtc 413 ||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| | Sbjct: 229 gggcagtggtgcttcgactgccagccagagttcgccggctccagctgcgtccgctccgcc 288 Query: 414 gcctccgaccccttccaactcgttaataactcgctgccattcaacaagtatgcctatctc 473 ||| || | |||||||||||| ||| |||||| ||||||||||||||||||| |||||| Sbjct: 289 gccaccaatcccttccaactcactaacaactcgttgccattcaacaagtatgcgtatctc 348 Query: 474 acgacgcacaatgcattcgccattgttggggaaccgtcgcacaccggaattccgcgcatc 533 ||||| |||||| |||| || || |||||||| || |||||||| ||| |||| |||||| Sbjct: 349 acgacacacaattcatttgcgatcgttggggagccatcgcacactggagttccacgcatc 408 Query: 534 accttcgacaaccaggaggatacagtcaccgatcagttaaataatggtgtacgcgcgctg 593 ||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| Sbjct: 409 acctttgacaaccaggaggatacagtcactgatcaattaaataacggtgtccgcgcgctg 468 Query: 594 atgctcgacacatatgacttcaaaggagatgtatggttgtgtcattccagtggaggcaaa 653 ||||| || |||||||||||||||||||||||||||||||| ||||| | |||||| ||| Sbjct: 469 atgcttgatacatatgacttcaaaggagatgtatggttgtgccattcaaatggagggaaa 528 Query: 654 tgcaacgattttactgcatttgaaccagcactggacacttttaaggaaattgaggcattt 713 ||||| ||||| |||||||| ||||| ||| ||||||| || |||||||| || || || Sbjct: 529 tgcaatgatttcactgcattcgaacctgcattggacacattcaaggaaatcgaagccttc 588 Query: 714 ctttctgccaacccatctgaaatcgttacgttgatcctggaagattatgttaacgcgcca 773 ||| ||||| |||||||||||||| ||||||||||||||||| || || | || || Sbjct: 589 cttggagccaatccatctgaaatcgtcacgttgatcctggaagactacgtgcatgcaccg 648 Query: 774 aatggcctgacgaacgtgttcaatgcatctggcctgcaaaagtactggtttccggtgtcg 833 ||||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||||| Sbjct: 649 aatggcctgacaaacgtgttcaaggcctctggtctgatgaagtactggtttcccgtgtcg 708 Query: 834 aaaatgccgcagaatggtcaggactggcctcttgtcagtgatatggtcacaagcaaccag 893 |||||||| ||||| ||| |||| ||||||||||||||||| ||||| | ||||||||| Sbjct: 709 aaaatgccacagaaaggtaaggattggcctcttgtcagtgacatggttgcgagcaaccag 768 Query: 894 cgcctccttgtgttcacctctgccagatcgaagcaagccacagaaggaatcgcataccag 953 |||||||||||||||||||| ||| || ||||| || || |||||||||||||||||| Sbjct: 769 cgcctccttgtgttcacctccatcaggtcaaagcaggctactgaaggaatcgcataccag 828 Query: 954 tggaatttcatggttgagaacaattatggcgacgacggaatggatgctggggaatgctcg 1013 ||||| | |||||| |||||||| || || || || || ||||||||||| ||||||| Sbjct: 829 tggaactacatggtcgagaacaactacggagatgatggtatggatgctggcaaatgctca 888 Query: 1014 aaccgcgcggagtccgcgccgctcaacgacaagaccaagtcactggtcctcatgaactac 1073 || || || || || || || || || ||||| |||||||| | ||||| |||||||| Sbjct: 889 aatcgtgcagaatctgcacctctgaatgacaaaaccaagtcgttagtcctggtgaactac 948 Query: 1074 ttcccgtctgtccctgtgaagctgactgcatgtttgcagcactccaagggcctcactgac 1133 ||||| || ||||| |||||| | || ||||| |||||||||||||| |||| |||||| Sbjct: 949 ttcccatcggtcccggtgaaggtaaccgcatgcctgcagcactccaagagccttactgac 1008 Query: 1134 atggctagtacatgctacagcgcagccggaaaccgatgggctaatttcgtcgcggtcgac 1193 |||| | ||||||||| | ||||| || || |||||||||||||| |||| || || Sbjct: 1009 atggtgaacacatgctacggtgcagctgggaatcgatgggctaatttactcgcagttgat 1068 Query: 1194 tactacaagagaagcgagggagggggcgcgttccaggccaccgatctgctcaacggcatg 1253 ||||| |||||||| || ||||||||||| ||||| || || ||| ||||||| |||| Sbjct: 1069 tactataagagaagtgatggagggggcgcattccaagcgactgatttgctcaatggcaga 1128 Query: 1254 ctcctgtgcggatgccaggacgtcaaggcttgccagcaaggatctagtgta 1304 |||||||| ||||||||||| |||| ||||||| || ||||||| ||||| Sbjct: 1129 ctcctgtgtggatgccaggatgtcagggcttgctcgcgaggatctggtgta 1179 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 agatggggggcgcctttacggcggcg 160 ||||||||||||||||||| |||||| Sbjct: 110 agatggggggcgcctttacagcggcg 135
>dbj|AK064733.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C04, full insert sequence Length = 1639 Score = 688 bits (347), Expect = 0.0 Identities = 800/951 (84%) Strand = Plus / Plus Query: 354 gggcagtggtgcttcgactgcgagccggagctcgccggctcccactgcgtccgctccgtc 413 ||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| | Sbjct: 229 gggcagtggtgcttcgactgccagccagagttcgccggctccagctgcgtccgctccgcc 288 Query: 414 gcctccgaccccttccaactcgttaataactcgctgccattcaacaagtatgcctatctc 473 ||| || | |||||||||||| ||| |||||| ||||||||||||||||||| |||||| Sbjct: 289 gccaccaatcccttccaactcactaacaactcgttgccattcaacaagtatgcgtatctc 348 Query: 474 acgacgcacaatgcattcgccattgttggggaaccgtcgcacaccggaattccgcgcatc 533 ||||| |||||| |||| || || |||||||| || |||||||| ||| |||| |||||| Sbjct: 349 acgacacacaattcatttgcgatcgttggggagccatcgcacactggagttccacgcatc 408 Query: 534 accttcgacaaccaggaggatacagtcaccgatcagttaaataatggtgtacgcgcgctg 593 ||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| Sbjct: 409 acctttgacaaccaggaggatacagtcactgatcaattaaataacggtgtccgcgcgctg 468 Query: 594 atgctcgacacatatgacttcaaaggagatgtatggttgtgtcattccagtggaggcaaa 653 ||||| || |||||||||||||||||||||||||||||||| ||||| | |||||| ||| Sbjct: 469 atgcttgatacatatgacttcaaaggagatgtatggttgtgccattcaaatggagggaaa 528 Query: 654 tgcaacgattttactgcatttgaaccagcactggacacttttaaggaaattgaggcattt 713 ||||| ||||| |||||||| ||||| ||| ||||||| || |||||||| || || || Sbjct: 529 tgcaatgatttcactgcattcgaacctgcattggacacattcaaggaaatcgaagccttc 588 Query: 714 ctttctgccaacccatctgaaatcgttacgttgatcctggaagattatgttaacgcgcca 773 ||| ||||| |||||||||||||| ||||||||||||||||| || || | || || Sbjct: 589 cttggagccaatccatctgaaatcgtcacgttgatcctggaagactacgtgcatgcaccg 648 Query: 774 aatggcctgacgaacgtgttcaatgcatctggcctgcaaaagtactggtttccggtgtcg 833 ||||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||||| Sbjct: 649 aatggcctgacaaacgtgttcaaggcctctggtctgatgaagtactggtttcccgtgtcg 708 Query: 834 aaaatgccgcagaatggtcaggactggcctcttgtcagtgatatggtcacaagcaaccag 893 |||||||| ||||| ||| |||| ||||||||||||||||| ||||| | ||||||||| Sbjct: 709 aaaatgccacagaaaggtaaggattggcctcttgtcagtgacatggttgcgagcaaccag 768 Query: 894 cgcctccttgtgttcacctctgccagatcgaagcaagccacagaaggaatcgcataccag 953 |||||||||||||||||||| ||| || ||||| || || |||||||||||||||||| Sbjct: 769 cgcctccttgtgttcacctccatcaggtcaaagcaggctactgaaggaatcgcataccag 828 Query: 954 tggaatttcatggttgagaacaattatggcgacgacggaatggatgctggggaatgctcg 1013 ||||| | |||||| |||||||| || || || || || ||||||||||| ||||||| Sbjct: 829 tggaactacatggtcgagaacaactacggagatgatggtatggatgctggcaaatgctca 888 Query: 1014 aaccgcgcggagtccgcgccgctcaacgacaagaccaagtcactggtcctcatgaactac 1073 || || || || || || || || || ||||| |||||||| | ||||| |||||||| Sbjct: 889 aatcgtgcagaatctgcacctctgaatgacaaaaccaagtcgttagtcctggtgaactac 948 Query: 1074 ttcccgtctgtccctgtgaagctgactgcatgtttgcagcactccaagggcctcactgac 1133 ||||| || ||||| |||||| | || ||||| |||||||||||||| |||| |||||| Sbjct: 949 ttcccatcggtcccggtgaaggtaaccgcatgcctgcagcactccaagagccttactgac 1008 Query: 1134 atggctagtacatgctacagcgcagccggaaaccgatgggctaatttcgtcgcggtcgac 1193 |||| | ||||||||| | ||||| || || |||||||||||||| |||| || || Sbjct: 1009 atggtgaacacatgctacggtgcagctgggaatcgatgggctaatttactcgcagttgat 1068 Query: 1194 tactacaagagaagcgagggagggggcgcgttccaggccaccgatctgctcaacggcatg 1253 ||||| |||||||| || ||||||||||| ||||| || || ||| ||||||| |||| Sbjct: 1069 tactataagagaagtgatggagggggcgcattccaagcgactgatttgctcaatggcaga 1128 Query: 1254 ctcctgtgcggatgccaggacgtcaaggcttgccagcaaggatctagtgta 1304 |||||||| ||||||||||| |||| ||||||| || ||||||| ||||| Sbjct: 1129 ctcctgtgtggatgccaggatgtcagggcttgctcgcgaggatctggtgta 1179 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 agatggggggcgcctttacggcggcg 160 ||||||||||||||||||| |||||| Sbjct: 110 agatggggggcgcctttacagcggcg 135
>emb|CT831717.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129L07, full insert sequence Length = 1537 Score = 680 bits (343), Expect = 0.0 Identities = 799/951 (84%) Strand = Plus / Plus Query: 354 gggcagtggtgcttcgactgcgagccggagctcgccggctcccactgcgtccgctccgtc 413 |||||||||||||| |||||| |||||||| ||||||||||| |||||||||||||| | Sbjct: 129 gggcagtggtgcttggactgccagccggagttcgccggctccagctgcgtccgctccgcc 188 Query: 414 gcctccgaccccttccaactcgttaataactcgctgccattcaacaagtatgcctatctc 473 ||| || | |||||||||||| ||| |||||| ||||||||||||||||||| |||||| Sbjct: 189 gccaccaatcccttccaactcactaacaactcgttgccattcaacaagtatgcgtatctc 248 Query: 474 acgacgcacaatgcattcgccattgttggggaaccgtcgcacaccggaattccgcgcatc 533 ||||| |||||| |||| || || |||||||| || |||||||| ||| |||| |||||| Sbjct: 249 acgacacacaattcatttgcgatcgttggggagccatcgcacactggagttccacgcatc 308 Query: 534 accttcgacaaccaggaggatacagtcaccgatcagttaaataatggtgtacgcgcgctg 593 ||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||| Sbjct: 309 acctttgacaaccaggaggatacagtcactgatcaattaaataacggtgtccgcgcgctg 368 Query: 594 atgctcgacacatatgacttcaaaggagatgtatggttgtgtcattccagtggaggcaaa 653 ||||| || |||||||||||||||||||||||||||||||| ||||| | |||||| ||| Sbjct: 369 atgcttgatacatatgacttcaaaggagatgtatggttgtgccattcaaatggagggaaa 428 Query: 654 tgcaacgattttactgcatttgaaccagcactggacacttttaaggaaattgaggcattt 713 ||||| ||||| |||||||| ||||| ||| ||||||| || |||||||| || || || Sbjct: 429 tgcaatgatttcactgcattcgaacctgcattggacacattcaaggaaatcgaagccttc 488 Query: 714 ctttctgccaacccatctgaaatcgttacgttgatcctggaagattatgttaacgcgcca 773 ||| ||||| |||||||||||||| ||||||||||||||||| || || | || || Sbjct: 489 cttggagccaatccatctgaaatcgtcacgttgatcctggaagactacgtgcatgcaccg 548 Query: 774 aatggcctgacgaacgtgttcaatgcatctggcctgcaaaagtactggtttccggtgtcg 833 ||||||||||| ||||||||||| | ||||| ||| |||||||||||||| |||||| Sbjct: 549 aatggcctgacaaacgtgttcaaggtctctggtctgatgaagtactggtttcccgtgtcg 608 Query: 834 aaaatgccgcagaatggtcaggactggcctcttgtcagtgatatggtcacaagcaaccag 893 |||||||| ||||| ||| |||| ||||||||||||||||| ||||| | ||||||||| Sbjct: 609 aaaatgccacagaaaggtaaggattggcctcttgtcagtgacatggttgcgagcaaccag 668 Query: 894 cgcctccttgtgttcacctctgccagatcgaagcaagccacagaaggaatcgcataccag 953 |||||||||||||||||||| ||| || ||||| || || |||||||||||||||||| Sbjct: 669 cgcctccttgtgttcacctccatcaggtcaaagcaggctactgaaggaatcgcataccag 728 Query: 954 tggaatttcatggttgagaacaattatggcgacgacggaatggatgctggggaatgctcg 1013 ||||| | |||||| |||||||| || || || || || ||||||||||| ||||||| Sbjct: 729 tggaactacatggtcgagaacaactacggagatgatggtatggatgctggcaaatgctca 788 Query: 1014 aaccgcgcggagtccgcgccgctcaacgacaagaccaagtcactggtcctcatgaactac 1073 || || || || || || || || || ||||| |||||||| | ||||| |||||||| Sbjct: 789 aatcgtgcagaatctgcacctctgaatgacaaaaccaagtcgttagtcctggtgaactac 848 Query: 1074 ttcccgtctgtccctgtgaagctgactgcatgtttgcagcactccaagggcctcactgac 1133 ||||| || ||||| |||||| | || ||||| |||||||||||||| |||| ||| || Sbjct: 849 ttcccatcggtcccggtgaaggtaaccgcatgcctgcagcactccaagagccttacttac 908 Query: 1134 atggctagtacatgctacagcgcagccggaaaccgatgggctaatttcgtcgcggtcgac 1193 |||| | ||||||||| | ||||| || || ||||||||||||||| |||| || || Sbjct: 909 atggtgaacacatgctacggtgcagctgggaatcgatgggctaatttcctcgcagttgat 968 Query: 1194 tactacaagagaagcgagggagggggcgcgttccaggccaccgatctgctcaacggcatg 1253 ||||| |||||||| || ||||||||||| ||||| || || ||| ||||||| |||| Sbjct: 969 tactataagagaagtgatggagggggcgcattccaagcgactgatttgctcaatggcaga 1028 Query: 1254 ctcctgtgcggatgccaggacgtcaaggcttgccagcaaggatctagtgta 1304 |||||||| ||||||||||| |||| ||||||| || ||||||| ||||| Sbjct: 1029 ctcctgtgtggatgccaggatgtcagggcttgctcgcgaggatctggtgta 1079
>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete sequence Length = 157662 Score = 226 bits (114), Expect = 2e-55 Identities = 255/302 (84%) Strand = Plus / Minus Query: 675 gaaccagcactggacacttttaaggaaattgaggcatttctttctgccaacccatctgaa 734 ||||| ||| ||||||| || |||||||| || || || ||| ||||| ||||||||| Sbjct: 51923 gaacctgcattggacacattcaaggaaatcgaagccttccttggagccaatccatctgaa 51864 Query: 735 atcgttacgttgatcctggaagattatgttaacgcgccaaatggcctgacgaacgtgttc 794 ||||| ||||||||||||||||| || || | || || ||||||||||| ||||||||| Sbjct: 51863 atcgtcacgttgatcctggaagactacgtgcatgcaccgaatggcctgacaaacgtgttc 51804 Query: 795 aatgcatctggcctgcaaaagtactggtttccggtgtcgaaaatgccgcagaatggtcag 854 || || ||||| ||| |||||||||||||| |||||||||||||| ||||| ||| || Sbjct: 51803 aaggcctctggtctgatgaagtactggtttcccgtgtcgaaaatgccacagaaaggtaag 51744 Query: 855 gactggcctcttgtcagtgatatggtcacaagcaaccagcgcctccttgtgttcacctct 914 || ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct: 51743 gattggcctcttgtcagtgacatggttgcgagcaaccagcgcctccttgtgttcacctcc 51684 Query: 915 gccagatcgaagcaagccacagaaggaatcgcataccagtggaatttcatggttgagaac 974 ||| || ||||| || || ||||||||||||||||||||||| | |||||| |||||| Sbjct: 51683 atcaggtcaaagcaggctactgaaggaatcgcataccagtggaactacatggtcgagaac 51624 Query: 975 aa 976 || Sbjct: 51623 aa 51622 Score = 149 bits (75), Expect = 4e-32 Identities = 120/135 (88%) Strand = Plus / Minus Query: 441 aactcgctgccattcaacaagtatgcctatctcacgacgcacaatgcattcgccattgtt 500 |||||| ||||||||||||||||||| ||||||||||| |||||| |||| || || ||| Sbjct: 52348 aactcgttgccattcaacaagtatgcgtatctcacgacacacaattcatttgcgatcgtt 52289 Query: 501 ggggaaccgtcgcacaccggaattccgcgcatcaccttcgacaaccaggaggatacagtc 560 ||||| || |||||||| ||| |||| ||||||||||| ||||||||||||||||||||| Sbjct: 52288 ggggagccatcgcacactggagttccacgcatcacctttgacaaccaggaggatacagtc 52229 Query: 561 accgatcagttaaat 575 || ||||| |||||| Sbjct: 52228 actgatcaattaaat 52214 Score = 117 bits (59), Expect = 1e-22 Identities = 86/95 (90%) Strand = Plus / Minus Query: 579 ggtgtacgcgcgctgatgctcgacacatatgacttcaaaggagatgtatggttgtgtcat 638 ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct: 52106 ggtgtccgcgcgctgatgcttgatacatatgacttcaaaggagatgtatggttgtgccat 52047 Query: 639 tccagtggaggcaaatgcaacgattttactgcatt 673 || | |||||| |||||||| ||||| |||||||| Sbjct: 52046 tcaaatggagggaaatgcaatgatttcactgcatt 52012 Score = 89.7 bits (45), Expect = 3e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 354 gggcagtggtgcttcgactgcgagccggagctcgccggctcccactgcgtccgctccgtc 413 ||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| | Sbjct: 53151 gggcagtggtgcttcgactgccagccagagttcgccggctccagctgcgtccgctccgcc 53092 Query: 414 gcctccgaccccttccaactc 434 ||| || | |||||||||||| Sbjct: 53091 gccaccaatcccttccaactc 53071 Score = 79.8 bits (40), Expect = 3e-11 Identities = 115/140 (82%) Strand = Plus / Minus Query: 1041 gacaagaccaagtcactggtcctcatgaactacttcccgtctgtccctgtgaagctgact 1100 ||||| |||||||| | ||||| ||||||||||||| || ||||| |||||| | || Sbjct: 51464 gacaaaaccaagtcgttagtcctggtgaactacttcccatcggtcccggtgaaggtaacc 51405 Query: 1101 gcatgtttgcagcactccaagggcctcactgacatggctagtacatgctacagcgcagcc 1160 ||||| |||||||||||||| |||| |||||||||| | ||||||||| | ||||| Sbjct: 51404 gcatgcctgcagcactccaagagccttactgacatggtgaacacatgctacggtgcagct 51345 Query: 1161 ggaaaccgatgggctaattt 1180 || || |||||||||||||| Sbjct: 51344 gggaatcgatgggctaattt 51325 Score = 67.9 bits (34), Expect = 1e-07 Identities = 73/86 (84%) Strand = Plus / Minus Query: 1201 agagaagcgagggagggggcgcgttccaggccaccgatctgctcaacggcatgctcctgt 1260 ||||||| || ||||||||||| ||||| || || ||| ||||||| |||| ||||||| Sbjct: 51177 agagaagtgatggagggggcgcattccaagcgactgatttgctcaatggcagactcctgt 51118 Query: 1261 gcggatgccaggacgtcaaggcttgc 1286 | ||||||||||| |||| ||||||| Sbjct: 51117 gtggatgccaggatgtcagggcttgc 51092 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 agatggggggcgcctttacggcggcg 160 ||||||||||||||||||| |||||| Sbjct: 53383 agatggggggcgcctttacagcggcg 53358
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 226 bits (114), Expect = 2e-55 Identities = 255/302 (84%) Strand = Plus / Minus Query: 675 gaaccagcactggacacttttaaggaaattgaggcatttctttctgccaacccatctgaa 734 ||||| ||| ||||||| || |||||||| || || || ||| ||||| ||||||||| Sbjct: 17014746 gaacctgcattggacacattcaaggaaatcgaagccttccttggagccaatccatctgaa 17014687 Query: 735 atcgttacgttgatcctggaagattatgttaacgcgccaaatggcctgacgaacgtgttc 794 ||||| ||||||||||||||||| || || | || || ||||||||||| ||||||||| Sbjct: 17014686 atcgtcacgttgatcctggaagactacgtgcatgcaccgaatggcctgacaaacgtgttc 17014627 Query: 795 aatgcatctggcctgcaaaagtactggtttccggtgtcgaaaatgccgcagaatggtcag 854 || || ||||| ||| |||||||||||||| |||||||||||||| ||||| ||| || Sbjct: 17014626 aaggcctctggtctgatgaagtactggtttcccgtgtcgaaaatgccacagaaaggtaag 17014567 Query: 855 gactggcctcttgtcagtgatatggtcacaagcaaccagcgcctccttgtgttcacctct 914 || ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct: 17014566 gattggcctcttgtcagtgacatggttgcgagcaaccagcgcctccttgtgttcacctcc 17014507 Query: 915 gccagatcgaagcaagccacagaaggaatcgcataccagtggaatttcatggttgagaac 974 ||| || ||||| || || ||||||||||||||||||||||| | |||||| |||||| Sbjct: 17014506 atcaggtcaaagcaggctactgaaggaatcgcataccagtggaactacatggtcgagaac 17014447 Query: 975 aa 976 || Sbjct: 17014446 aa 17014445 Score = 157 bits (79), Expect = 2e-34 Identities = 121/135 (89%) Strand = Plus / Minus Query: 441 aactcgctgccattcaacaagtatgcctatctcacgacgcacaatgcattcgccattgtt 500 |||||||||||||||||| ||||||||||||||||||| |||||| |||| || |||||| Sbjct: 3047729 aactcgctgccattcaactagtatgcctatctcacgacacacaattcatttgcaattgtt 3047670 Query: 501 ggggaaccgtcgcacaccggaattccgcgcatcaccttcgacaaccaggaggatacagtc 560 ||||| || |||||||| ||| |||| ||||||||||| |||||||| |||||||||||| Sbjct: 3047669 ggggagccatcgcacactggagttccacgcatcacctttgacaaccaagaggatacagtc 3047610 Query: 561 accgatcagttaaat 575 || ||||| |||||| Sbjct: 3047609 actgatcaattaaat 3047595 Score = 149 bits (75), Expect = 4e-32 Identities = 120/135 (88%) Strand = Plus / Minus Query: 441 aactcgctgccattcaacaagtatgcctatctcacgacgcacaatgcattcgccattgtt 500 |||||| ||||||||||||||||||| ||||||||||| |||||| |||| || || ||| Sbjct: 17015171 aactcgttgccattcaacaagtatgcgtatctcacgacacacaattcatttgcgatcgtt 17015112 Query: 501 ggggaaccgtcgcacaccggaattccgcgcatcaccttcgacaaccaggaggatacagtc 560 ||||| || |||||||| ||| |||| ||||||||||| ||||||||||||||||||||| Sbjct: 17015111 ggggagccatcgcacactggagttccacgcatcacctttgacaaccaggaggatacagtc 17015052 Query: 561 accgatcagttaaat 575 || ||||| |||||| Sbjct: 17015051 actgatcaattaaat 17015037 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 576 aatggtgtacgcgcgctgatgctcgacacatatgacttcaaaggagatgtatggttgtgt 635 |||||||| |||||||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 3047486 aatggtgttcgcgcgctgatgcttgatatatatgacttcaaaggagatgtatggttgtgc 3047427 Query: 636 cattccagtggaggcaaatgcaacgattttactgcatttg 675 ||||| | |||||| |||||||| ||||| |||||||||| Sbjct: 3047426 cattcaaatggagggaaatgcaatgatttcactgcatttg 3047387 Score = 117 bits (59), Expect = 1e-22 Identities = 86/95 (90%) Strand = Plus / Minus Query: 579 ggtgtacgcgcgctgatgctcgacacatatgacttcaaaggagatgtatggttgtgtcat 638 ||||| |||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct: 17014929 ggtgtccgcgcgctgatgcttgatacatatgacttcaaaggagatgtatggttgtgccat 17014870 Query: 639 tccagtggaggcaaatgcaacgattttactgcatt 673 || | |||||| |||||||| ||||| |||||||| Sbjct: 17014869 tcaaatggagggaaatgcaatgatttcactgcatt 17014835 Score = 89.7 bits (45), Expect = 3e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 354 gggcagtggtgcttcgactgcgagccggagctcgccggctcccactgcgtccgctccgtc 413 ||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| | Sbjct: 17015974 gggcagtggtgcttcgactgccagccagagttcgccggctccagctgcgtccgctccgcc 17015915 Query: 414 gcctccgaccccttccaactc 434 ||| || | |||||||||||| Sbjct: 17015914 gccaccaatcccttccaactc 17015894 Score = 83.8 bits (42), Expect = 2e-12 Identities = 48/50 (96%) Strand = Plus / Minus Query: 441 aactcgctgccattcaacaagtatgcctatctcacgacgcacaatgcatt 490 |||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 26884142 aactcgctgccattcaacaagtatgcctatctcacgacacacaattcatt 26884093 Score = 79.8 bits (40), Expect = 3e-11 Identities = 115/140 (82%) Strand = Plus / Minus Query: 1041 gacaagaccaagtcactggtcctcatgaactacttcccgtctgtccctgtgaagctgact 1100 ||||| |||||||| | ||||| ||||||||||||| || ||||| |||||| | || Sbjct: 17014287 gacaaaaccaagtcgttagtcctggtgaactacttcccatcggtcccggtgaaggtaacc 17014228 Query: 1101 gcatgtttgcagcactccaagggcctcactgacatggctagtacatgctacagcgcagcc 1160 ||||| |||||||||||||| |||| |||||||||| | ||||||||| | ||||| Sbjct: 17014227 gcatgcctgcagcactccaagagccttactgacatggtgaacacatgctacggtgcagct 17014168 Query: 1161 ggaaaccgatgggctaattt 1180 || || |||||||||||||| Sbjct: 17014167 gggaatcgatgggctaattt 17014148 Score = 67.9 bits (34), Expect = 1e-07 Identities = 73/86 (84%) Strand = Plus / Minus Query: 1201 agagaagcgagggagggggcgcgttccaggccaccgatctgctcaacggcatgctcctgt 1260 ||||||| || ||||||||||| ||||| || || ||| ||||||| |||| ||||||| Sbjct: 17014000 agagaagtgatggagggggcgcattccaagcgactgatttgctcaatggcagactcctgt 17013941 Query: 1261 gcggatgccaggacgtcaaggcttgc 1286 | ||||||||||| |||| ||||||| Sbjct: 17013940 gtggatgccaggatgtcagggcttgc 17013915 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 agatggggggcgcctttacggcggcg 160 ||||||||||||||||||| |||||| Sbjct: 17016206 agatggggggcgcctttacagcggcg 17016181
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 157 bits (79), Expect = 2e-34 Identities = 121/135 (89%) Strand = Plus / Plus Query: 441 aactcgctgccattcaacaagtatgcctatctcacgacgcacaatgcattcgccattgtt 500 |||||||||||||||||| ||||||||||||||||||| |||||| |||| || |||||| Sbjct: 48643 aactcgctgccattcaactagtatgcctatctcacgacacacaattcatttgcaattgtt 48702 Query: 501 ggggaaccgtcgcacaccggaattccgcgcatcaccttcgacaaccaggaggatacagtc 560 ||||| || |||||||| ||| |||| ||||||||||| |||||||| |||||||||||| Sbjct: 48703 ggggagccatcgcacactggagttccacgcatcacctttgacaaccaagaggatacagtc 48762 Query: 561 accgatcagttaaat 575 || ||||| |||||| Sbjct: 48763 actgatcaattaaat 48777 Score = 119 bits (60), Expect = 3e-23 Identities = 90/100 (90%) Strand = Plus / Plus Query: 576 aatggtgtacgcgcgctgatgctcgacacatatgacttcaaaggagatgtatggttgtgt 635 |||||||| |||||||||||||| || | |||||||||||||||||||||||||||||| Sbjct: 48886 aatggtgttcgcgcgctgatgcttgatatatatgacttcaaaggagatgtatggttgtgc 48945 Query: 636 cattccagtggaggcaaatgcaacgattttactgcatttg 675 ||||| | |||||| |||||||| ||||| |||||||||| Sbjct: 48946 cattcaaatggagggaaatgcaatgatttcactgcatttg 48985
>gb|AC079736.13| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003G23, complete sequence Length = 135931 Score = 83.8 bits (42), Expect = 2e-12 Identities = 48/50 (96%) Strand = Plus / Plus Query: 441 aactcgctgccattcaacaagtatgcctatctcacgacgcacaatgcatt 490 |||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct: 41394 aactcgctgccattcaacaagtatgcctatctcacgacacacaattcatt 41443
>gb|AC144431.11| Medicago truncatula clone mth2-21i14, complete sequence Length = 154482 Score = 54.0 bits (27), Expect = 0.002 Identities = 33/35 (94%) Strand = Plus / Minus Query: 621 gatgtatggttgtgtcattccagtggaggcaaatg 655 |||||||||||||||||||| | |||||||||||| Sbjct: 69246 gatgtatggttgtgtcattctactggaggcaaatg 69212
>ref|XM_001023585.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00693200) mRNA, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.41 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1412 tacccttttctttctttctggat 1434 ||||||||||||||||||||||| Sbjct: 3315 tacccttttctttctttctggat 3337
>gb|AC138173.2| Mus musculus strain C57BL/6J clone rp23-364j24 map 17, complete sequence Length = 145253 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 114 tcctctttttctatagctttcagatg 139 |||||||||||||||||||| ||||| Sbjct: 37293 tcctctttttctatagcttttagatg 37268
>gb|AC119816.5| Mus musculus chromosome 5, clone RP23-59B8, complete sequence Length = 186564 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 114 tcctctttttctatagctttcagatg 139 |||||||||||||||||||| ||||| Sbjct: 42608 tcctctttttctatagcttttagatg 42583
>emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, complete sequence Length = 171830 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1434 tagaagagacatatacttagca 1455 |||||||||||||||||||||| Sbjct: 85619 tagaagagacatatacttagca 85598
>gb|AY552950.1| Meleagris gallopavo clone MNT-382 microsatellite sequence Length = 428 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1282 cttgccagcaaggatctagtgt 1303 |||||||||||||||||||||| Sbjct: 299 cttgccagcaaggatctagtgt 320
>gb|DQ889045.1| Paralichthys olivaceus microsatellite Poli1482TUF sequence Length = 360 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 gttcctcttctcctctttttc 124 ||||||||||||||||||||| Sbjct: 307 gttcctcttctcctctttttc 327
>ref|NM_001064916.1| Oryza sativa (japonica cultivar-group) Os06g0682300 (Os06g0682300) mRNA, complete cds Length = 724 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 tgattgttcgattggtttgtt 87 ||||||||||||||||||||| Sbjct: 43 tgattgttcgattggtttgtt 23
>ref|XM_978899.1| PREDICTED: Mus musculus RIKEN cDNA 3110052M02 gene, transcript variant 2 (3110052M02Rik), mRNA Length = 4456 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 1930 attatccatttctgtttctcttctc 1906
>ref|XM_978853.1| PREDICTED: Mus musculus RIKEN cDNA 3110052M02 gene, transcript variant 1 (3110052M02Rik), mRNA Length = 3080 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 554 attatccatttctgtttctcttctc 530
>ref|XM_976578.1| PREDICTED: Mus musculus RIKEN cDNA 3110052M02 gene, transcript variant 2 (3110052M02Rik), mRNA Length = 4456 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 1930 attatccatttctgtttctcttctc 1906
>ref|XM_976540.1| PREDICTED: Mus musculus RIKEN cDNA 3110052M02 gene, transcript variant 1 (3110052M02Rik), mRNA Length = 3080 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 554 attatccatttctgtttctcttctc 530
>ref|XM_919457.2| PREDICTED: Mus musculus RIKEN cDNA 3110052M02 gene, transcript variant 7 (3110052M02Rik), mRNA Length = 4456 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 1930 attatccatttctgtttctcttctc 1906
>ref|XM_905566.2| PREDICTED: Mus musculus RIKEN cDNA 3110052M02 gene, transcript variant 3 (3110052M02Rik), mRNA Length = 3080 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 554 attatccatttctgtttctcttctc 530
>gb|AC130539.3| Mus musculus BAC clone RP23-455J15 from chromosome 9, complete sequence Length = 179156 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 233 actgtgatggaatcattctgcccct 257 ||||||||||| ||||||||||||| Sbjct: 142639 actgtgatggattcattctgcccct 142615
>dbj|AK124199.1| Homo sapiens cDNA FLJ42205 fis, clone THYMU2035554 Length = 2752 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1374 ctggagatggatggtgtgatg 1394 ||||||||||||||||||||| Sbjct: 1823 ctggagatggatggtgtgatg 1843
>dbj|AK155999.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830003J04 product:similar to Zinc finger protein 118 [Mus musculus], full insert sequence Length = 2502 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 555 attatccatttctgtttctcttctc 531
>gb|AC046176.13| Homo sapiens chromosome 8, clone RP11-446E9, complete sequence Length = 184349 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1374 ctggagatggatggtgtgatg 1394 ||||||||||||||||||||| Sbjct: 163038 ctggagatggatggtgtgatg 163018
>dbj|AK161479.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932432P12 product:similar to Zinc finger protein 118 [Mus musculus], full insert sequence Length = 4111 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 1913 attatccatttctgtttctcttctc 1889
>gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, complete sequence Length = 188788 Score = 42.1 bits (21), Expect = 6.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 95 tccatttctgttcctcttctcctcttttt 123 ||||||||||| |||||||||||||||| Sbjct: 107931 tccatttctgtgtctcttctcctcttttt 107959
>dbj|AK221707.1| Arabidopsis thaliana mRNA for MAP3K-like protein kinase, complete cds, clone: RAFL16-50-B22 Length = 1304 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tatggttgtgtcattccagtggagg 649 |||||||||||||||||| |||||| Sbjct: 279 tatggttgtgtcattccactggagg 303
>gb|AC018607.12| Homo sapiens chromosome 8, clone RP11-318K15, complete sequence Length = 189678 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1374 ctggagatggatggtgtgatg 1394 ||||||||||||||||||||| Sbjct: 45987 ctggagatggatggtgtgatg 45967
>gb|AC093882.2| Homo sapiens BAC clone RP11-658L13 from 4, complete sequence Length = 172346 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 960 ttcatggttgagaacaattat 980 ||||||||||||||||||||| Sbjct: 10691 ttcatggttgagaacaattat 10711
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 tgattgttcgattggtttgtt 87 ||||||||||||||||||||| Sbjct: 28056521 tgattgttcgattggtttgtt 28056541
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 tgattgttcgattggtttgtt 87 ||||||||||||||||||||| Sbjct: 14069535 tgattgttcgattggtttgtt 14069515
>emb|AL512328.15| Human DNA sequence from clone RP11-505D24 on chromosome 1 Contains the 5' end of the AGT gene for angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8), the 5' end of the CAPN9 gene for calpain 9 (nCL-4) and the 3' end of a variant of a novel gene, complete sequence Length = 55722 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1375 tggagatggatggtgtgatga 1395 ||||||||||||||||||||| Sbjct: 32823 tggagatggatggtgtgatga 32843
>emb|AL049748.2|HS41P2 Human DNA sequence from clone RP1-41P2 on chromosome 22, complete sequence Length = 108315 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1415 ccttttctttctttctggata 1435 ||||||||||||||||||||| Sbjct: 15561 ccttttctttctttctggata 15541
>emb|Z99707.1|ATAP21 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1 Length = 206420 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tatggttgtgtcattccagtggagg 649 |||||||||||||||||| |||||| Sbjct: 146416 tatggttgtgtcattccactggagg 146440
>gb|AF334400.1|AF334400 Homo sapiens Vps39/Vam6-like protein gene, complete cds Length = 47833 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1374 ctggagatggatggtgtgatg 1394 ||||||||||||||||||||| Sbjct: 36564 ctggagatggatggtgtgatg 36584
>emb|AL161590.2|ATCHRIV86 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86 Length = 198780 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 625 tatggttgtgtcattccagtggagg 649 |||||||||||||||||| |||||| Sbjct: 108818 tatggttgtgtcattccactggagg 108794
>emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16L2 Length = 111338 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1632 atatgtgaactaattattaacggtt 1656 |||||||||||||||| |||||||| Sbjct: 14657 atatgtgaactaattaataacggtt 14633
>emb|AL157735.2|ATT6D9 Arabidopsis thaliana DNA chromosome 3, BAC clone T6D9 Length = 79716 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1632 atatgtgaactaattattaacggtt 1656 |||||||||||||||| |||||||| Sbjct: 68543 atatgtgaactaattaataacggtt 68519
>gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62D2, complete sequence Length = 177762 Score = 42.1 bits (21), Expect = 6.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 95 tccatttctgttcctcttctcctcttttt 123 ||||||||||| |||||||||||||||| Sbjct: 95665 tccatttctgtgtctcttctcctcttttt 95693
>gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546B15 map 15q15, complete sequence Length = 183539 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1374 ctggagatggatggtgtgatg 1394 ||||||||||||||||||||| Sbjct: 20022 ctggagatggatggtgtgatg 20002
>gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610G5 map 15q15, complete sequence Length = 142121 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1374 ctggagatggatggtgtgatg 1394 ||||||||||||||||||||| Sbjct: 95197 ctggagatggatggtgtgatg 95177
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 tgattgttcgattggtttgtt 87 ||||||||||||||||||||| Sbjct: 101340 tgattgttcgattggtttgtt 101360
>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1287_H05 Length = 97812 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 tgattgttcgattggtttgtt 87 ||||||||||||||||||||| Sbjct: 51045 tgattgttcgattggtttgtt 51025
>gb|AC144555.1| Homo sapiens fosmid clone XXFOS-89030C12 from 2, complete sequence Length = 9441 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1414 cccttttctttctttctggat 1434 ||||||||||||||||||||| Sbjct: 4966 cccttttctttctttctggat 4986
>emb|BX826296.1|CNS0A4LC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB11ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1247 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tatggttgtgtcattccagtggagg 649 |||||||||||||||||| |||||| Sbjct: 427 tatggttgtgtcattccactggagg 451
>emb|BX827356.1|CNS0A3Q5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1323 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 625 tatggttgtgtcattccagtggagg 649 |||||||||||||||||| |||||| Sbjct: 376 tatggttgtgtcattccactggagg 400
>dbj|AK062934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A12, full insert sequence Length = 724 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 tgattgttcgattggtttgtt 87 ||||||||||||||||||||| Sbjct: 682 tgattgttcgattggtttgtt 702
>gb|AC153824.9| Mus musculus 10 BAC RP23-53D13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 233119 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1080 tctgtccctgtgaagctgact 1100 ||||||||||||||||||||| Sbjct: 80720 tctgtccctgtgaagctgact 80700
>emb|AL163642.4|CNS01RIM Human chromosome 14 DNA sequence BAC R-688D15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184037 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 ttctcctctttttctatagctttca 135 |||||||||||||||||| |||||| Sbjct: 124083 ttctcctctttttctatacctttca 124059
>emb|AL929062.10| Mouse DNA sequence from clone RP23-342J9 on chromosome X, complete sequence Length = 212856 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1493 gtttccgcaatggaaaaatggtgaa 1517 |||||| |||||||||||||||||| Sbjct: 189060 gtttcctcaatggaaaaatggtgaa 189036
>gb|BC064464.1| Mus musculus RIKEN cDNA 3110052M02 gene, mRNA (cDNA clone MGC:69880 IMAGE:6822779), complete cds Length = 4248 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 attatccatttctgttcctcttctc 115 |||||||||||||||| |||||||| Sbjct: 387 attatccatttctgtttctcttctc 363
>gb|AC138313.4| Mus musculus BAC clone RP23-243P9 from 9, complete sequence Length = 195883 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 actgtgatggaatcattctgcccct 257 ||||||||||| ||||||||||||| Sbjct: 156532 actgtgatggattcattctgcccct 156556
>gb|AC015564.13| Homo sapiens chromosome 8, clone RP11-351D9, complete sequence Length = 193425 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 687 gacacttttaaggaaattgag 707 ||||||||||||||||||||| Sbjct: 81805 gacacttttaaggaaattgag 81785
>emb|AL713985.10| Mouse DNA sequence from clone RP23-104K14 on chromosome 10, complete sequence Length = 199286 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1080 tctgtccctgtgaagctgact 1100 ||||||||||||||||||||| Sbjct: 16132 tctgtccctgtgaagctgact 16152
>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3 Length = 252150 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1571 gctctagctctgcctggtggaatgt 1595 |||||||||||| |||||||||||| Sbjct: 144855 gctctagctctgtctggtggaatgt 144879
>emb|X99946.1|MMTSXDNA M.musculus 94kb genomic sequence encoding Tsx gene Length = 94459 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1571 gctctagctctgcctggtggaatgt 1595 |||||||||||| |||||||||||| Sbjct: 73812 gctctagctctgtctggtggaatgt 73788
>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete sequence Length = 229724 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1571 gctctagctctgcctggtggaatgt 1595 |||||||||||| |||||||||||| Sbjct: 138007 gctctagctctgtctggtggaatgt 137983
>gb|U41396.1|MMMB414A3 Mus musculus X inactive specific transcript (Xist) gene, cosmid MB4-14A, fragment 3 Length = 8233 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1571 gctctagctctgcctggtggaatgt 1595 |||||||||||| |||||||||||| Sbjct: 4881 gctctagctctgtctggtggaatgt 4905 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 292,907,801 Number of extensions: 17163185 Number of successful extensions: 442293 Number of sequences better than 10.0: 59 Number of HSP's gapped: 442281 Number of HSP's successfully gapped: 77 Length of query: 1699 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1676 Effective length of database: 18,503,978,556 Effective search space: 31012668059856 Effective search space used: 31012668059856 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)