ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf115d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P50995:ANX11_HUMAN Annexin A11 - Homo sapiens (Human) 36 0.82
2Q9NZM4:GSCR1_HUMAN Glioma tumor suppressor candidate region gene... 34 2.4
3P30205:WC11_BOVIN Antigen WC1.1 precursor - Bos taurus (Bovine) 33 4.1
4P01824:HV206_HUMAN Ig heavy chain V-II region WAH - Homo sapiens... 33 6.9

>P50995:ANX11_HUMAN Annexin A11 - Homo sapiens (Human)|
          Length = 505
 Score = 35.8 bits (81), Expect = 0.82
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -1

Query: 1466 PNLGRGAGAA------PHGVHNAPTVEEPIGPSGFSTSPCGTKPSSRRDGRARTPSYPPH 1305
            PNL  GA  A      P G    P+ ++P+ P G    P G  PS       R PSYPP+
Sbjct: 71   PNLYPGAPGAGYPPVPPGGFGQPPSAQQPVPPYGMYPPPGGNPPS-------RMPSYPPY 123



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>Q9NZM4:GSCR1_HUMAN Glioma tumor suppressor candidate region gene 1 protein - Homo|
            sapiens (Human)
          Length = 1509

 Score = 34.3 bits (77), Expect = 2.4
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -1

Query: 1472 ADPNLGRGAGAAPHGVHNAPTVEEPIGPSGFSTSPCGTKPSSRRDGRARTPSYPP 1308
            A P  G G  ++P   H AP  + P  PS   T P  ++P SR    +R PS PP
Sbjct: 714  AAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHPTRP-PSRPPSRPQSVSRPPSEPP 767



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>P30205:WC11_BOVIN Antigen WC1.1 precursor - Bos taurus (Bovine)|
          Length = 1436

 Score = 33.5 bits (75), Expect = 4.1
 Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
 Frame = -3

Query: 1032 SYDGHRPRTREKGPLCYQQATAAACTSCDHRRQEKRSHTQGRDVVTWHVGRQ---CSNSS 862
            S +G RP++      C    TAAACT  +  R           V  WH G     C +S 
Sbjct: 1134 SCEGRRPKS------C---PTAAACTDREKLRLRGGDSECSGRVEVWHNGSWGTVCDDSW 1184

Query: 861  KTGEDATLSFPSPCKSELACV----------ALWTSVNQNGGKYKSVWDC 742
               E   +     C   L  V          ++W    Q GG+  S+WDC
Sbjct: 1185 SLAEAEVVCQQLGCGQALEAVRSAAFGPGNGSIWLDEVQCGGRESSLWDC 1234



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>P01824:HV206_HUMAN Ig heavy chain V-II region WAH - Homo sapiens (Human)|
          Length = 129

 Score = 32.7 bits (73), Expect = 6.9
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 1107 PGKGLRWYGGYFSMSHSIYYNP 1172
            PGKGL W GG +  + SIYYNP
Sbjct: 43   PGKGLEWIGGVY-YTGSIYYNP 63


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 362,079,407
Number of extensions: 7669064
Number of successful extensions: 19256
Number of sequences better than 10.0: 4
Number of HSP's gapped: 19246
Number of HSP's successfully gapped: 4
Length of query: 779
Length of database: 100,686,439
Length adjustment: 121
Effective length of query: 658
Effective length of database: 67,496,744
Effective search space: 44412857552
Effective search space used: 44412857552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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