ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf109j09 |
|---|---|
| Clone Library Name | barley_pub |
>Q06090:RM51_YEAST Mitochondrial 54S ribosomal protein L51 - Saccharomyces cerevisiae| (Baker's yeast) Length = 140 Score = 59.3 bits (142), Expect = 1e-08 Identities = 36/113 (31%), Positives = 64/113 (56%), Gaps = 4/113 (3%) Frame = +3 Query: 147 VWQLQKLVVNYCDWGGSSRGIRAFMES-HLPALKEKNPQLEVVTQLVRGQHPNLKGVYKN 323 V+ +K+ + +C+WGGSS G+R F+ S L ++ P ++ G HP L+ Y N Sbjct: 20 VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEVMRKSG-HPLLRAEYTN 78 Query: 324 HNERVVCVRNLAPEDIMLQASRLRCSLGRKVVKLRTRH---VTKRPSVQGTWT 473 E+V+CVRNL +++ + L+ S G +++ RT++ + SV+G W+ Sbjct: 79 GREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIWS 130
>Q99N89:RM43_MOUSE 39S ribosomal protein L43, mitochondrial precursor - Mus musculus| (Mouse) Length = 183 Score = 49.7 bits (117), Expect = 9e-06 Identities = 34/111 (30%), Positives = 50/111 (45%) Frame = +3 Query: 141 RGVWQLQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYK 320 R V QLQ+L ++ SSRG R F+E + +NP + V P + Y Sbjct: 21 RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80 Query: 321 NHNERVVCVRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKRPSVQGTWT 473 N R V + + E+I +L G V+++R T PS+QG WT Sbjct: 81 NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWT 131
>Q8N983:RM43_HUMAN 39S ribosomal protein L43, mitochondrial precursor - Homo sapiens| (Human) Length = 215 Score = 47.0 bits (110), Expect = 6e-05 Identities = 32/110 (29%), Positives = 48/110 (43%) Frame = +3 Query: 141 RGVWQLQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYK 320 R V QLQ+L + G SSRG R F+E + +NP + + P + Y Sbjct: 21 RYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYL 80 Query: 321 NHNERVVCVRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKRPSVQGTW 470 N R + + E+I +L G V+++R T PS+QG W Sbjct: 81 NGAVREESIHCKSVEEISTLVQKLADQSGLDVIRIRKPFHTDNPSIQGQW 130
>Q95KE5:RM43_BOVIN 39S ribosomal protein L43, mitochondrial precursor - Bos taurus| (Bovine) Length = 159 Score = 43.1 bits (100), Expect = 8e-04 Identities = 31/110 (28%), Positives = 47/110 (42%) Frame = +3 Query: 141 RGVWQLQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYK 320 R V QLQ+L + SSRG R F+E + +NP + + P + Y Sbjct: 21 RYVQQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPGVVIYVNPRPCCVPRVVAEYL 80 Query: 321 NHNERVVCVRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKRPSVQGTW 470 N R + + E+I +L G V+++R T PS+QG W Sbjct: 81 NGAVREESLNCKSVEEIATLVQKLADQSGLDVIRIRKPFHTDSPSIQGQW 130
>Q02370:NDUA2_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 - Bos| taurus (Bovine) Length = 99 Score = 39.7 bits (91), Expect = 0.009 Identities = 20/81 (24%), Positives = 39/81 (48%) Frame = +3 Query: 129 VMALRGVWQLQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLK 308 + +RG L+++ ++ C S+G+R F+E LK+ NP L ++ + P L Sbjct: 7 IRGVRGKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLW 66 Query: 309 GVYKNHNERVVCVRNLAPEDI 371 Y E+ V + N + + + Sbjct: 67 ARYAFGQEKNVSLNNFSADQV 87
>Q5R5Z4:NDUA2_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 -| Pongo pygmaeus (Orangutan) Length = 103 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +3 Query: 156 LQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNER 335 L+++ ++ C S+G+R F+E LK+ NP L ++ + P L Y E+ Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 75 Query: 336 VVCVRNLAPEDI 371 V + N + + + Sbjct: 76 NVPLNNFSADQV 87
>Q4R5E2:NDUA2_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 -| Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey) Length = 99 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +3 Query: 156 LQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNER 335 L+++ ++ C S+G+R F+E LK+ NP L ++ + P L Y E+ Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEK 75 Query: 336 VVCVRNLAPEDI 371 V + N + + + Sbjct: 76 NVPLNNFSADQV 87
>Q9D125:RT25_MOUSE Mitochondrial 28S ribosomal protein S25 - Mus musculus (Mouse)| Length = 171 Score = 34.7 bits (78), Expect = 0.28 Identities = 23/95 (24%), Positives = 46/95 (48%) Frame = +3 Query: 165 LVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNERVVC 344 + VNY +G G R F+ ++P ++ KNP ++++ P L+ + + +V Sbjct: 30 MTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVD 89 Query: 345 VRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKR 449 V + ++IM ++ LG+K LR + K+ Sbjct: 90 VETKSNKEIMEHIKKI---LGKKEETLREEELEKQ 121
>O43678:NDUA2_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 - Homo| sapiens (Human) Length = 99 Score = 34.7 bits (78), Expect = 0.28 Identities = 18/72 (25%), Positives = 34/72 (47%) Frame = +3 Query: 156 LQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNER 335 L+++ ++ C S+G+R F+E LK+ NP L ++ + P L Y E Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75 Query: 336 VVCVRNLAPEDI 371 V + N + + + Sbjct: 76 NVPLNNFSADQV 87
>Q0MQ92:NDUA2_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 -| Gorilla gorilla gorilla (Lowland gorilla) Length = 99 Score = 33.1 bits (74), Expect = 0.82 Identities = 18/72 (25%), Positives = 33/72 (45%) Frame = +3 Query: 156 LQKLVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNER 335 L+++ ++ C SRG+R F+E LK+ N L ++ + P L Y E Sbjct: 16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQET 75 Query: 336 VVCVRNLAPEDI 371 V + N + + + Sbjct: 76 NVPLNNFSADQV 87
>Q4QR80:RT25_RAT Mitochondrial 28S ribosomal protein S25 - Rattus norvegicus (Rat)| Length = 171 Score = 31.6 bits (70), Expect = 2.4 Identities = 22/95 (23%), Positives = 45/95 (47%) Frame = +3 Query: 165 LVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNERVVC 344 + VNY G G R F+ ++P ++ KNP ++++ P L+ ++ + +V Sbjct: 30 MTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMLFKNMTPSPFLRFYLESGEQVLVD 89 Query: 345 VRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKR 449 V + +I+ ++ LG+K LR + K+ Sbjct: 90 VETKSNTEIVEHIKKI---LGKKEETLREEELEKQ 121
>Q07842:NDUA2_NEUCR NADH-ubiquinone oxidoreductase 10.5 kDa subunit - Neurospora crassa| Length = 94 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/72 (23%), Positives = 33/72 (45%) Frame = +3 Query: 177 YCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNERVVCVRNL 356 +C G S R+F+ + PA+K+ NP ++ + G P + ++ E+ + L Sbjct: 18 FCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGL 77 Query: 357 APEDIMLQASRL 392 + + I S L Sbjct: 78 SDQQIEETVSSL 89
>P82663:RT25_HUMAN Mitochondrial 28S ribosomal protein S25 - Homo sapiens (Human)| Length = 173 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/95 (24%), Positives = 43/95 (45%) Frame = +3 Query: 165 LVVNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNERVVC 344 + VNY G G R F+ ++P ++ KNP ++++ P L+ + + +V Sbjct: 30 MTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVD 89 Query: 345 VRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKR 449 V + ++IM +R LG+ LR K+ Sbjct: 90 VETKSNKEIM---EHIRKILGKNEETLREEEEEKK 121
>Q9VY28:RT25_DROME Probable mitochondrial 28S ribosomal protein S25 - Drosophila| melanogaster (Fruit fly) Length = 167 Score = 31.2 bits (69), Expect = 3.1 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +3 Query: 171 VNYCDWGGSSRGIRAFMESHLPALKEKNPQLEVVT 275 VNY +G G R F+ ++P ++ KNP+++V+T Sbjct: 33 VNYNTYGAHHAGARDFVFWNIPQIQFKNPEVQVLT 67
>P42935:ELP2_YEAST Elongator complex protein 2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 788 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 297 PNLKGVY---KNHNERVVCVRNLAPEDIMLQAS 386 PN KGVY K H V CVR + D M+ AS Sbjct: 46 PNNKGVYATLKGHEAEVTCVRFVPDSDFMVSAS 78
>Q3UIL6:PKHA7_MOUSE Pleckstrin homology domain-containing family A member 7 - Mus| musculus (Mouse) Length = 1118 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 219 MESHLPALKEKNPQLEVVTQLVRGQHPNLKGVYKNHNERVVCVRNLAPEDIM 374 +E + ALKE QLE V +++ Q + H E++ C + L ED++ Sbjct: 705 LEDKIRALKENKDQLESVLEVLHRQTEQYRD-QPQHLEKITCQQRLLQEDLV 755
>P45965:YNZ5_CAEEL Uncharacterized protein T09A5.5 - Caenorhabditis elegans| Length = 163 Score = 30.0 bits (66), Expect = 7.0 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 198 SRGIRAFMESHLPALKEKNPQLEVVTQ-LVRGQHPNLKGVYKNHNERVVCVRNLAPEDIM 374 + G+ F+E LPA++E NPQ++ Q P + G Y R V + E ++ Sbjct: 32 AEGLEQFVEECLPAIRENNPQVKYFLQRSYTTCDPFVVGEYSWLRHRKKRVNWKSKEQVL 91 Query: 375 LQASRLRCSLGRKVVKLRTRHVTKR-PSVQGTWTTE 479 + S+G + R V +R P Q W TE Sbjct: 92 SMIEEM--SIGGDYREGYKRGVNRRLPRGQELWDTE 125
>P76361:YEER_ECOLI Inner membrane protein yeeR - Escherichia coli| Length = 510 Score = 30.0 bits (66), Expect = 7.0 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = -2 Query: 502 GTLTHIFSSVVHVPWTLGRFVTC--LVLSFTTFLPREHLSLLACNMMSSGAKFLTQTTLS 329 G +T + + H+ W G F+T +++SF L +H++L A S KF+ T L+ Sbjct: 48 GYITERITRLFHIRWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDS--VKFILTTALA 105 Query: 328 LWFL*TPFKL 299 L P ++ Sbjct: 106 GGLLAVPLQI 115
>O74531:POF7_SCHPO F-box protein pof7 - Schizosaccharomyces pombe (Fission yeast)| Length = 361 Score = 30.0 bits (66), Expect = 7.0 Identities = 27/111 (24%), Positives = 50/111 (45%) Frame = +3 Query: 276 QLVRGQHPNLKGVYKNHNERVVCVRNLAPEDIMLQASRLRCSLGRKVVKLRTRHVTKRPS 455 +L H +++ +Y+ +C RN E + AS + V + + +T+ S Sbjct: 48 RLAHKVHEDVESIYRRLERLQLCKRNEEEEMLNSDASEAMLT----VSSVPSPTLTENES 103 Query: 456 VQGTWTTELKM*VKVPRQTVAVFLLNCLRSMARTLLLLDLPFVSSYSLIQK 608 V + + +K+P + + V L NC+R L DL ++SS +L K Sbjct: 104 VNESVVPNI---LKLPDEVLLVILENCIRD------LHDLRYLSSIALTCK 145 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 100,397,052 Number of extensions: 2014546 Number of successful extensions: 4878 Number of sequences better than 10.0: 19 Number of HSP's gapped: 4875 Number of HSP's successfully gapped: 19 Length of query: 205 Length of database: 100,686,439 Length adjustment: 108 Effective length of query: 97 Effective length of database: 71,062,579 Effective search space: 6893070163 Effective search space used: 6893070163 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
