>O04433:SRP14_ORYSJ Signal recognition particle 14 kDa protein - Oryza sativa subsp.|
           japonica (Rice)
          Length = 132
 Score =  182 bits (463), Expect = 1e-45
 Identities = 89/106 (83%), Positives = 99/106 (93%)
 Frame = +1

Query: 193 MVLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKGELVEYRCLVRAS 372
           MV++Q DPFLSELT+MYER+TEKGSVWVTMKRSSMKC+ARLKKMA KGE VEYRCLVRA+
Sbjct: 1   MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60

Query: 373 DGKRNISTSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKKTVE 510
           DGK+NI T+LSAKEYLKFQASY+ VLKAHMHALKKRERKD+KK  E
Sbjct: 61  DGKKNICTALSAKEYLKFQASYATVLKAHMHALKKRERKDKKKAAE 106

>O04421:SRP14_ARATH Signal recognition particle 14 kDa protein - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 121

 Score =  151 bits (381), Expect = 4e-36
 Identities = 69/107 (64%), Positives = 93/107 (86%)
 Frame = +1

Query: 193 MVLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKGELVEYRCLVRAS 372
           MVL+Q DPFL+ELT+M+E++ EKGSVWVT+KRSS+K K + +K++  GE +EYRCL+RA+
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 373 DGKRNISTSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKKTVEA 513
           DGK+ +STS+ AK++ +FQASY+ +LKAHM ALKKRERKDRKK+ EA
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEA 107

>P16254:SRP14_MOUSE Signal recognition particle 14 kDa protein - Mus musculus (Mouse)|
          Length = 110

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 46/104 (44%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
 Frame = +1

Query: 193 MVLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKG-ELVEYRCLVRA 369
           MVL++++ FL+ELT ++++    GSV++T+K+   + K   +K + +G E  E +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60

Query: 370 SDGKRNISTSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKK 501
           +DGKR IST +S+KE  KFQ +YS +L+A+M  LKKR++K++ K
Sbjct: 61  TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKSK 104

>P37108:SRP14_HUMAN Signal recognition particle 14 kDa protein - Homo sapiens (Human)|
          Length = 136

 Score = 91.3 bits (225), Expect = 5e-18
 Identities = 46/108 (42%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
 Frame = +1

Query: 193 MVLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKG-ELVEYRCLVRA 369
           MVL++++ FL+ELT ++++    GSV++T+K+   + K   KK   +G E  + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 370 SDGKRNISTSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKKTVEA 513
           +DGK+ IST +S+KE  KFQ +YS +L+A+M  LKKR++K++ K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

>P16255:SRP14_CANFA Signal recognition particle 14 kDa protein - Canis familiaris (Dog)|
          Length = 110

 Score = 87.0 bits (214), Expect = 1e-16
 Identities = 44/104 (42%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
 Frame = +1

Query: 193 MVLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKG-ELVEYRCLVRA 369
           MVL++++ FL+ELT ++++    GSV++T+K+   + K   +K + +G E  + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60

Query: 370 SDGKRNISTSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKK 501
           +DGK+ IST +S+KE  KFQ +YS +L+A+M  LKKR++K + K
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKSKSK 104

>Q9P372:SRP14_SCHPO Signal recognition particle subunit srp14 - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 106

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
 Frame = +1

Query: 196 VLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKGELVEYRCLVRASD 375
           +L+  + FL +LT++ +    KG+  V +   S KC        D+GE      L+RA  
Sbjct: 1   MLLSNEEFLKKLTDLLQTHQSKGTGSVYL---SQKCNP-----VDEGEGSSASVLIRAKS 52

Query: 376 GK-RNISTSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKK 501
           G    IST +    +  F  SY+ V K  +  LKKR+RK  KK
Sbjct: 53  GAAEKISTVVELDYFTDFFQSYAEVCKGQIVGLKKRDRKKTKK 95

>O18881:SRP14_MACRA Signal recognition particle 14 kDa protein - Macaca radiata (Bonnet|
           monkey)
          Length = 74

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 20/41 (48%), Positives = 31/41 (75%)
 Frame = +1

Query: 391 STSLSAKEYLKFQASYSLVLKAHMHALKKRERKDRKKTVEA 513
           ST +S+KE  KFQ +YS +L+A+M  LKKR++K++ K  +A
Sbjct: 1   STVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 41

>Q9VR91:HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 - Drosophila melanogaster|
            (Fruit fly)
          Length = 4912

 Score = 35.0 bits (79), Expect = 0.44
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = -3

Query: 456  GFKNQGV*SLEFQIFLCRQRGGDVPLAIGGTDQAPVLHQLPLVRHLLQPSLALHRGSLH 280
            G K+  + S + +++ C + G +  L +G T   P+ HQLP++R  +   +A+H G  H
Sbjct: 3027 GSKSLFIVSQDGKVYACGE-GTNGRLGLGVTHNVPLPHQLPVLRQYVVKKVAVHSGGKH 3084

>Q6B855:TKT_BOVIN Transketolase - Bos taurus (Bovine)|
          Length = 623

 Score = 33.1 bits (74), Expect = 1.7
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -2

Query: 745 IKTLLQKMSGDDASLYRYSQASSRGHEFKGKMDDNVLTAHVGEKGIG----KILQVPRYL 578
           IK L +K+  D A   +    +   H ++G + + V +A VGE G+      + QVPR  
Sbjct: 537 IKPLDKKLILDSARATKGRILTVEDHYYEGGIGEAVASAVVGEPGVTVTRLAVSQVPRSG 596

Query: 577 DPADFLKM 554
            PA+ LKM
Sbjct: 597 KPAELLKM 604

>P40142:TKT_MOUSE Transketolase - Mus musculus (Mouse)|
          Length = 623

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -2

Query: 745 IKTLLQKMSGDDASLYRYSQASSRGHEFKGKMDDNVLTAHVGEKGIG----KILQVPRYL 578
           IK L +K+  D A   +    +   H ++G + + V  A VGE G+      + QVPR  
Sbjct: 537 IKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSAAVVGEPGVTVTRLAVSQVPRSG 596

Query: 577 DPADFLKM 554
            PA+ LKM
Sbjct: 597 KPAELLKM 604

>Q2M197:PYRG_DROPS CTP synthase - Drosophila pseudoobscura (Fruit fly)|
          Length = 637

 Score = 32.0 bits (71), Expect = 3.7
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = +1

Query: 214 PFLSELTNMYERTTEKGSVWVTMKRSSMKCKARLKKMADKGELVEYRCLVRASDGKRNIS 393
           P L E   + E   E+  + + M + + KC    + +A + E V           +R +S
Sbjct: 253 PLLMEQNGVIEYLNERLQLNIDMSKRT-KCLQHWRDLARRTETV-----------RREVS 300

Query: 394 TSLSAKEYLKFQASYSLVLKAHMHALKKRERK 489
            ++  K Y KF  SY+ V+KA  HA     RK
Sbjct: 301 IAIVGK-YTKFADSYASVVKALQHAALAANRK 331

>P29832:VIE3_MCMVS Immediate-early protein 3 - Murine cytomegalovirus (strain Smith)|
          Length = 611

 Score = 31.2 bits (69), Expect = 6.4
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +1

Query: 142 RGQDLRSPGD--RATTLLKMVLMQADPFLSELTNMYERTTEKGSVWVTMKRSSMKCKARL 315
           R QD+R   D  RA   ++  L  + PF++E T     + E      T+ R+S  C A  
Sbjct: 457 RSQDVRKAVDETRARMGMRPNLSISCPFMTEHTKPINHSRE------TIDRTSAACTAGT 510

Query: 316 KKMADKGELVEYRCLVRASDGKRNISTSLSAKEYL 420
           + + D  E    +C+ R SD +  I  + +  ++L
Sbjct: 511 QAVWDMEERRGQKCVPRTSDYRSMIIQAANPPDFL 545


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 141,823,033
Number of extensions: 2732801
Number of successful extensions: 8159
Number of sequences better than 10.0: 12
Number of HSP's gapped: 8156
Number of HSP's successfully gapped: 12
Length of query: 314
Length of database: 100,686,439
Length adjustment: 113
Effective length of query: 201
Effective length of database: 69,691,104
Effective search space: 14007911904
Effective search space used: 14007911904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)