ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf106o11 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT832289.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005K11, full insert sequence Length = 936 Score = 278 bits (140), Expect = 3e-71 Identities = 248/284 (87%) Strand = Plus / Plus Query: 187 ctcaagatggtgctgatgcaggcagatccgttcctgagcgagctgaccaacatgtacgag 246 |||||||||||| || |||| |||||||||| ||||||||| |||| | |||||||||| Sbjct: 189 ctcaagatggtggtgctgcaaccagatccgtttctgagcgagttgacgagcatgtacgag 248 Query: 247 cggaccacggagaagggctccgtctgggtcaccatgaagcgatcctcgatgaagtgcaag 306 |||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| || Sbjct: 249 cggagcacggagaagggatctgtctgggtcaccatgaagcgatcatcgatgaagtgccag 308 Query: 307 gctaggttgaagaagatggcggacaagggggagctggtggagtaccggtgcctggtccgt 366 || ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||| Sbjct: 309 gcaaggttgaagaagatggcggcgaagggagaggcagtggagtaccggtgcctcgtccgt 368 Query: 367 gcctccgatggcaagaggaacatctccacctcgctgtctgcaaaggaatatctgaaattc 426 ||| |||||||||||| |||||||| |||| |||| ||||||||||| || ||||| ||| Sbjct: 369 gccaccgatggcaagaagaacatctgcaccgcgctctctgcaaaggagtacctgaagttc 428 Query: 427 caagcttcatactccctggttcttaaagcccacatgcatgcttt 470 ||||||||||| || |||||||||||||| ||||| ||||| Sbjct: 429 caagcttcatatgccacagttcttaaagcccatatgcacgcttt 472 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 653 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 710 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 711 tacctttatagag 723 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 537 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 588
>ref|NM_001060462.1| Oryza sativa (japonica cultivar-group) Os04g0623700 (Os04g0623700) mRNA, complete cds Length = 791 Score = 278 bits (140), Expect = 3e-71 Identities = 248/284 (87%) Strand = Plus / Plus Query: 187 ctcaagatggtgctgatgcaggcagatccgttcctgagcgagctgaccaacatgtacgag 246 |||||||||||| || |||| |||||||||| ||||||||| |||| | |||||||||| Sbjct: 50 ctcaagatggtggtgctgcaaccagatccgtttctgagcgagttgacgagcatgtacgag 109 Query: 247 cggaccacggagaagggctccgtctgggtcaccatgaagcgatcctcgatgaagtgcaag 306 |||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| || Sbjct: 110 cggagcacggagaagggatctgtctgggtcaccatgaagcgatcatcgatgaagtgccag 169 Query: 307 gctaggttgaagaagatggcggacaagggggagctggtggagtaccggtgcctggtccgt 366 || ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||| Sbjct: 170 gcaaggttgaagaagatggcggcgaagggagaggcagtggagtaccggtgcctcgtccgt 229 Query: 367 gcctccgatggcaagaggaacatctccacctcgctgtctgcaaaggaatatctgaaattc 426 ||| |||||||||||| |||||||| |||| |||| ||||||||||| || ||||| ||| Sbjct: 230 gccaccgatggcaagaagaacatctgcaccgcgctctctgcaaaggagtacctgaagttc 289 Query: 427 caagcttcatactccctggttcttaaagcccacatgcatgcttt 470 ||||||||||| || |||||||||||||| ||||| ||||| Sbjct: 290 caagcttcatatgccacagttcttaaagcccatatgcacgcttt 333 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 514 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 571 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 572 tacctttatagag 584 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 398 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 449
>emb|Y10118.1|OSSRP14 O.sativa mRNA for signal recognition particle subunit 14 Length = 824 Score = 278 bits (140), Expect = 3e-71 Identities = 248/284 (87%) Strand = Plus / Plus Query: 187 ctcaagatggtgctgatgcaggcagatccgttcctgagcgagctgaccaacatgtacgag 246 |||||||||||| || |||| |||||||||| ||||||||| |||| | |||||||||| Sbjct: 59 ctcaagatggtggtgctgcaaccagatccgtttctgagcgagttgacgagcatgtacgag 118 Query: 247 cggaccacggagaagggctccgtctgggtcaccatgaagcgatcctcgatgaagtgcaag 306 |||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| || Sbjct: 119 cggagcacggagaagggatctgtctgggtcaccatgaagcgatcatcgatgaagtgccag 178 Query: 307 gctaggttgaagaagatggcggacaagggggagctggtggagtaccggtgcctggtccgt 366 || ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||| Sbjct: 179 gcaaggttgaagaagatggcggcgaagggagaggcagtggagtaccggtgcctcgtccgt 238 Query: 367 gcctccgatggcaagaggaacatctccacctcgctgtctgcaaaggaatatctgaaattc 426 ||| |||||||||||| |||||||| |||| |||| ||||||||||| || ||||| ||| Sbjct: 239 gccaccgatggcaagaagaacatctgcaccgcgctctctgcaaaggagtacctgaagttc 298 Query: 427 caagcttcatactccctggttcttaaagcccacatgcatgcttt 470 ||||||||||| || |||||||||||||| ||||| ||||| Sbjct: 299 caagcttcatatgccacagttcttaaagcccatatgcacgcttt 342 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 524 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 581 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 582 tacctttatagag 594 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 407 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 458
>dbj|AK071587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101P16, full insert sequence Length = 778 Score = 278 bits (140), Expect = 3e-71 Identities = 248/284 (87%) Strand = Plus / Plus Query: 187 ctcaagatggtgctgatgcaggcagatccgttcctgagcgagctgaccaacatgtacgag 246 |||||||||||| || |||| |||||||||| ||||||||| |||| | |||||||||| Sbjct: 100 ctcaagatggtggtgctgcaaccagatccgtttctgagcgagttgacgagcatgtacgag 159 Query: 247 cggaccacggagaagggctccgtctgggtcaccatgaagcgatcctcgatgaagtgcaag 306 |||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| || Sbjct: 160 cggagcacggagaagggatctgtctgggtcaccatgaagcgatcatcgatgaagtgccag 219 Query: 307 gctaggttgaagaagatggcggacaagggggagctggtggagtaccggtgcctggtccgt 366 || ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||| Sbjct: 220 gcaaggttgaagaagatggcggcgaagggagaggcagtggagtaccggtgcctcgtccgt 279 Query: 367 gcctccgatggcaagaggaacatctccacctcgctgtctgcaaaggaatatctgaaattc 426 ||| |||||||||||| |||||||| |||| |||| ||||||||||| || ||||| ||| Sbjct: 280 gccaccgatggcaagaagaacatctgcaccgcgctctctgcaaaggagtacctgaagttc 339 Query: 427 caagcttcatactccctggttcttaaagcccacatgcatgcttt 470 ||||||||||| || |||||||||||||| ||||| ||||| Sbjct: 340 caagcttcatatgcctcagttcttaaagcccatatgcacgcttt 383 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 564 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 621 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 622 tacctttatagag 634 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 448 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 499
>emb|CT832290.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA015G16, full insert sequence Length = 725 Score = 270 bits (136), Expect = 8e-69 Identities = 247/284 (86%) Strand = Plus / Plus Query: 187 ctcaagatggtgctgatgcaggcagatccgttcctgagcgagctgaccaacatgtacgag 246 |||| ||||||| || |||| |||||||||| ||||||||| |||| | |||||||||| Sbjct: 85 ctcaggatggtggtgctgcaaccagatccgtttctgagcgagttgacgagcatgtacgag 144 Query: 247 cggaccacggagaagggctccgtctgggtcaccatgaagcgatcctcgatgaagtgcaag 306 |||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| || Sbjct: 145 cggagcacggagaagggatctgtctgggtcaccatgaagcgatcatcgatgaagtgccag 204 Query: 307 gctaggttgaagaagatggcggacaagggggagctggtggagtaccggtgcctggtccgt 366 || ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||| Sbjct: 205 gcaaggttgaagaagatggcggcgaagggagaggcagtggagtaccggtgcctcgtccgt 264 Query: 367 gcctccgatggcaagaggaacatctccacctcgctgtctgcaaaggaatatctgaaattc 426 ||| |||||||||||| |||||||| |||| |||| ||||||||||| || ||||| ||| Sbjct: 265 gccaccgatggcaagaagaacatctgcaccgcgctctctgcaaaggagtacctgaagttc 324 Query: 427 caagcttcatactccctggttcttaaagcccacatgcatgcttt 470 ||||||||||| || |||||||||||||| ||||| ||||| Sbjct: 325 caagcttcatatgccacagttcttaaagcccatatgcacgcttt 368 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 549 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 606 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 607 tacctttatagag 619 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 433 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 484
>gb|DQ244670.1| Zea mays clone 9983 mRNA sequence Length = 774 Score = 159 bits (80), Expect = 2e-35 Identities = 215/260 (82%) Strand = Plus / Plus Query: 209 cagatccgttcctgagcgagctgaccaacatgtacgagcggaccacggagaagggctccg 268 |||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||| Sbjct: 102 cagatcggttcctgagcgagctgacgagcatgtacgagcggagcacggagaagggctccg 161 Query: 269 tctgggtcaccatgaagcgatcctcgatgaagtgcaaggctaggttgaagaagatggcgg 328 |||||||||||||||||||||| | | ||| ||||||| |||| |||||||| | Sbjct: 162 tctgggtcaccatgaagcgatcaactctcaagggcaaggcacagttgcggaagatggaga 221 Query: 329 acaagggggagctggtggagtaccggtgcctggtccgtgcctccgatggcaagaggaaca 388 | |||||| || ||| ||| || ||||||| ||||| |||||| ||||||||| ||||| Sbjct: 222 ataaggggcaggaggtagagcacaggtgcctcgtccgcgcctccaatggcaagaagaaca 281 Query: 389 tctccacctcgctgtctgcaaaggaatatctgaaattccaagcttcatactccctggttc 448 ||||||||||| | ||| |||||| || || ||||||||||||||| | |||| Sbjct: 282 tctccacctcggtttctctaaaggagtacacaaagttccaagcttcatacgcaacagttc 341 Query: 449 ttaaagcccacatgcatgct 468 |||| ||||| ||||||||| Sbjct: 342 ttaaggcccatatgcatgct 361 Score = 44.1 bits (22), Expect = 0.90 Identities = 25/26 (96%) Strand = Plus / Plus Query: 538 aagaagcagaagaaatcatcttcaaa 563 ||||||||||||||| |||||||||| Sbjct: 431 aagaagcagaagaaagcatcttcaaa 456
>gb|AY107795.1| Zea mays PCO131276 mRNA sequence Length = 819 Score = 157 bits (79), Expect = 9e-35 Identities = 163/191 (85%) Strand = Plus / Plus Query: 209 cagatccgttcctgagcgagctgaccaacatgtacgagcggaccacggagaagggctccg 268 |||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||| Sbjct: 133 cagatcggttcctgagcgagctgacgagcatgtacgagcggagcacggagaagggctccg 192 Query: 269 tctgggtcaccatgaagcgatcctcgatgaagtgcaaggctaggttgaagaagatggcgg 328 |||||||||||||||||||||| | | ||| ||||||| |||| |||||||| | Sbjct: 193 tctgggtcaccatgaagcgatcaactctcaagggcaaggcacagttgcggaagatggaga 252 Query: 329 acaagggggagctggtggagtaccggtgcctggtccgtgcctccgatggcaagaggaaca 388 | |||||| || ||| ||| || ||||||| ||||| |||||| ||||||||| ||||| Sbjct: 253 ataaggggcaggaggtagagcacaggtgcctcgtccgcgcctccaatggcaagaagaaca 312 Query: 389 tctccacctcg 399 ||||||||||| Sbjct: 313 tctccacctcg 323 Score = 52.0 bits (26), Expect = 0.004 Identities = 42/46 (91%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 538 aagaagcagaagaaatcatcttcaaa-aaatccgcagggtccaagt 582 ||||||||||||||| |||||||||| ||||| |||||||||||| Sbjct: 462 aagaagcagaagaaagcatcttcaaagaaatcttcagggtccaagt 507
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 113 bits (57), Expect = 1e-21 Identities = 93/105 (88%) Strand = Plus / Plus Query: 292 tcgatgaagtgcaaggctaggttgaagaagatggcggacaagggggagctggtggagtac 351 |||||||||||| |||| ||||||||||||||||||| ||||| ||| ||||||||| Sbjct: 31731793 tcgatgaagtgccaggcaaggttgaagaagatggcggcgaagggagaggcagtggagtac 31731852 Query: 352 cggtgcctggtccgtgcctccgatggcaagaggaacatctccacc 396 |||||||| ||||||||| |||||||||||| |||||||| |||| Sbjct: 31731853 cggtgcctcgtccgtgccaccgatggcaagaagaacatctgcacc 31731897 Score = 105 bits (53), Expect = 3e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 209 cagatccgttcctgagcgagctgaccaacatgtacgagcggaccacggagaagggctccg 268 |||||||||| ||||||||| |||| | |||||||||||||| |||||||||||| || | Sbjct: 31731617 cagatccgtttctgagcgagttgacgagcatgtacgagcggagcacggagaagggatctg 31731676 Query: 269 tctgggtcaccatgaagcgat 289 ||||||||||||||||||||| Sbjct: 31731677 tctgggtcaccatgaagcgat 31731697 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 31733761 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 31733818 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 31733819 tacctttatagag 31733831 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 403 tctgcaaaggaatatctgaaattccaagcttcatactccctggttcttaaagcccacatg 462 ||||||||||| || ||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 31733513 tctgcaaaggagtacctgaagttccaagcttcatatgccacagttcttaaagcccatatg 31733572 Query: 463 catgcttt 470 || ||||| Sbjct: 31733573 cacgcttt 31733580 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 31733645 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 31733696
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 113 bits (57), Expect = 1e-21 Identities = 93/105 (88%) Strand = Plus / Plus Query: 292 tcgatgaagtgcaaggctaggttgaagaagatggcggacaagggggagctggtggagtac 351 |||||||||||| |||| ||||||||||||||||||| ||||| ||| ||||||||| Sbjct: 65063 tcgatgaagtgccaggcaaggttgaagaagatggcggcgaagggagaggcagtggagtac 65122 Query: 352 cggtgcctggtccgtgcctccgatggcaagaggaacatctccacc 396 |||||||| ||||||||| |||||||||||| |||||||| |||| Sbjct: 65123 cggtgcctcgtccgtgccaccgatggcaagaagaacatctgcacc 65167 Score = 105 bits (53), Expect = 3e-19 Identities = 74/81 (91%) Strand = Plus / Plus Query: 209 cagatccgttcctgagcgagctgaccaacatgtacgagcggaccacggagaagggctccg 268 |||||||||| ||||||||| |||| | |||||||||||||| |||||||||||| || | Sbjct: 64887 cagatccgtttctgagcgagttgacgagcatgtacgagcggagcacggagaagggatctg 64946 Query: 269 tctgggtcaccatgaagcgat 289 ||||||||||||||||||||| Sbjct: 64947 tctgggtcaccatgaagcgat 64967 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/73 (87%), Gaps = 2/73 (2%) Strand = Plus / Plus Query: 633 gtcaagacgttgtcatccattttacccttaaattcatgtccgcgagatgaagcctgtgaa 692 |||||||| || || |||||||||| |||| |||||||| |||||||||||| |||||| Sbjct: 67031 gtcaagacattatcctccattttactctta--ttcatgtctgcgagatgaagcatgtgaa 67088 Query: 693 tacctatatagag 705 ||||| ||||||| Sbjct: 67089 tacctttatagag 67101 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 403 tctgcaaaggaatatctgaaattccaagcttcatactccctggttcttaaagcccacatg 462 ||||||||||| || ||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 66783 tctgcaaaggagtacctgaagttccaagcttcatatgccacagttcttaaagcccatatg 66842 Query: 463 catgcttt 470 || ||||| Sbjct: 66843 cacgcttt 66850 Score = 44.1 bits (22), Expect = 0.90 Identities = 46/52 (88%), Gaps = 4/52 (7%) Strand = Plus / Plus Query: 535 ccgaagaagcagaagaaatca---tcttcaaa-aaatccgcagggtccaagt 582 |||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct: 66915 ccgaagaagcagaagaaagcaccgtcttcaaagaaatctgcagggtccaagt 66966
>gb|AC026325.17| Homo sapiens 3 BAC RP11-335L9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162104 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 538 aagaagcagaagaaatcatcttcaaa 563 |||||||||||||||||||||||||| Sbjct: 62920 aagaagcagaagaaatcatcttcaaa 62945
>emb|CU137666.1| Medicago truncatula chromosome 5 clone mth2-60h20, COMPLETE SEQUENCE Length = 134617 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 gaagaagcagaagaaatcatc 557 ||||||||||||||||||||| Sbjct: 106620 gaagaagcagaagaaatcatc 106640
>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 3/8 Length = 347625 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 aagaagcagaagaaatcatcttcaa 562 ||||||||||||||||| ||||||| Sbjct: 239207 aagaagcagaagaaatcctcttcaa 239231
>gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complete sequence Length = 228667 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 546 gaagaaatcatcttcaaaaaa 566 ||||||||||||||||||||| Sbjct: 138245 gaagaaatcatcttcaaaaaa 138225
>gb|AF019972.1|AF019972 Plasmodium chabaudi chabaudi NE-rich protein gene, partial cds Length = 1667 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 866 atgatatgaatgaagaatctg 886 ||||||||||||||||||||| Sbjct: 491 atgatatgaatgaagaatctg 511
>ref|XM_741082.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000433.03.0) partial mRNA Length = 4401 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 866 atgatatgaatgaagaatctg 886 ||||||||||||||||||||| Sbjct: 1814 atgatatgaatgaagaatctg 1834 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 135,792,990 Number of extensions: 7225566 Number of successful extensions: 142548 Number of sequences better than 10.0: 15 Number of HSP's gapped: 142534 Number of HSP's successfully gapped: 37 Length of query: 944 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 921 Effective length of database: 18,503,978,556 Effective search space: 17042164250076 Effective search space used: 17042164250076 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
