ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf106n06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001052695.1| Oryza sativa (japonica cultivar-group) Os02g0191800 (Os02g0191800) mRNA, complete cds Length = 636 Score = 141 bits (71), Expect = 4e-30 Identities = 118/133 (88%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 279 gtcccggccgggatgatgtctgtgcgcgtgctgacgccgctggacagggaggtgcc---c 335 |||||| | ||||||||||| |||||||||||| |||||||||||||||||| ||| | Sbjct: 334 gtcccgccggggatgatgtcggtgcgcgtgctggcgccgctggacagggaggcgccgccc 393 Query: 336 aaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccacgccg 395 | ||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 394 agggtggtggtcgtgatggccggcgacgactcgccgtcgttcctcgccagcgccaccccg 453 Query: 396 ctcgacttcgccg 408 |||| |||||||| Sbjct: 454 ctcgccttcgccg 466 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 144 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcggcttcgccgtggtgatg 203 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 181 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcgggttcggggtggtgatg 240 Query: 204 agcctcatcgcggtggctctggccgtgct 232 |||||||||||||| || |||||||| Sbjct: 241 gcgctcatcgcggtggcgctcgccgtgct 269
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 141 bits (71), Expect = 4e-30 Identities = 118/133 (88%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 279 gtcccggccgggatgatgtctgtgcgcgtgctgacgccgctggacagggaggtgcc---c 335 |||||| | ||||||||||| |||||||||||| |||||||||||||||||| ||| | Sbjct: 5079376 gtcccgccggggatgatgtcggtgcgcgtgctggcgccgctggacagggaggcgccgccc 5079317 Query: 336 aaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccacgccg 395 | ||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 5079316 agggtggtggtcgtgatggccggcgacgactcgccgtcgttcctcgccagcgccaccccg 5079257 Query: 396 ctcgacttcgccg 408 |||| |||||||| Sbjct: 5079256 ctcgccttcgccg 5079244 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 144 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcggcttcgccgtggtgatg 203 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 5079529 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcgggttcggggtggtgatg 5079470 Query: 204 agcctcatcgcggtggctctggccgtgct 232 |||||||||||||| || |||||||| Sbjct: 5079469 gcgctcatcgcggtggcgctcgccgtgct 5079441
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0453H10 Length = 133464 Score = 141 bits (71), Expect = 4e-30 Identities = 118/133 (88%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 279 gtcccggccgggatgatgtctgtgcgcgtgctgacgccgctggacagggaggtgcc---c 335 |||||| | ||||||||||| |||||||||||| |||||||||||||||||| ||| | Sbjct: 39874 gtcccgccggggatgatgtcggtgcgcgtgctggcgccgctggacagggaggcgccgccc 39815 Query: 336 aaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccacgccg 395 | ||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 39814 agggtggtggtcgtgatggccggcgacgactcgccgtcgttcctcgccagcgccaccccg 39755 Query: 396 ctcgacttcgccg 408 |||| |||||||| Sbjct: 39754 ctcgccttcgccg 39742 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 144 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcggcttcgccgtggtgatg 203 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 40027 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcgggttcggggtggtgatg 39968 Query: 204 agcctcatcgcggtggctctggccgtgct 232 |||||||||||||| || |||||||| Sbjct: 39967 gcgctcatcgcggtggcgctcgccgtgct 39939
>dbj|AK063218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E02, full insert sequence Length = 636 Score = 141 bits (71), Expect = 4e-30 Identities = 118/133 (88%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 279 gtcccggccgggatgatgtctgtgcgcgtgctgacgccgctggacagggaggtgcc---c 335 |||||| | ||||||||||| |||||||||||| |||||||||||||||||| ||| | Sbjct: 334 gtcccgccggggatgatgtcggtgcgcgtgctggcgccgctggacagggaggcgccgccc 393 Query: 336 aaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccacgccg 395 | ||||||||| |||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct: 394 agggtggtggtcgtgatggccggcgacgactcgccgtcgttcctcgccagcgccaccccg 453 Query: 396 ctcgacttcgccg 408 |||| |||||||| Sbjct: 454 ctcgccttcgccg 466 Score = 113 bits (57), Expect = 9e-22 Identities = 81/89 (91%) Strand = Plus / Plus Query: 144 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcggcttcgccgtggtgatg 203 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 181 ccgccgccgttctggtcgacgccgacgccgtacctgttcatcgggttcggggtggtgatg 240 Query: 204 agcctcatcgcggtggctctggccgtgct 232 |||||||||||||| || |||||||| Sbjct: 241 gcgctcatcgcggtggcgctcgccgtgct 269
>ref|NM_001064664.1| Oryza sativa (japonica cultivar-group) Os06g0633100 (Os06g0633100) mRNA, complete cds Length = 701 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 161 gacgccgacgccgtacctgttcatcggcttcgccgtggtgatgagcctcatcgcggtggc 220 |||||||||||||||||| ||| | || ||||| ||| ||||| |||||||||||||||| Sbjct: 157 gacgccgacgccgtaccttttcctggggttcgcggtgatgatgggcctcatcgcggtggc 216 Query: 221 tctggccgtgctcctctgctcccgccgca 249 ||| |||||| ||||| | ||||||| Sbjct: 217 gctgctcgtgctggtctgcacgcgccgca 245 Score = 61.9 bits (31), Expect = 3e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gcccaaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccac 391 |||||||||||| || | |||||||||||| | ||||||||||||||||||||||| Sbjct: 319 gcccaaggtggtcgtcatcatggccggcgacaccgcgccgtccttcctcgccagcgccaa 378 Query: 392 gccgctc 398 ||||||| Sbjct: 379 gccgctc 385
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 161 gacgccgacgccgtacctgttcatcggcttcgccgtggtgatgagcctcatcgcggtggc 220 |||||||||||||||||| ||| | || ||||| ||| ||||| |||||||||||||||| Sbjct: 25272028 gacgccgacgccgtaccttttcctggggttcgcggtgatgatgggcctcatcgcggtggc 25272087 Query: 221 tctggccgtgctcctctgctcccgccgca 249 ||| |||||| ||||| | ||||||| Sbjct: 25272088 gctgctcgtgctggtctgcacgcgccgca 25272116 Score = 61.9 bits (31), Expect = 3e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gcccaaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccac 391 |||||||||||| || | |||||||||||| | ||||||||||||||||||||||| Sbjct: 25272190 gcccaaggtggtcgtcatcatggccggcgacaccgcgccgtccttcctcgccagcgccaa 25272249 Query: 392 gccgctc 398 ||||||| Sbjct: 25272250 gccgctc 25272256 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 300 gtgcgcgtgctgacgccgctgg 321 |||||||||||||||||||||| Sbjct: 4713462 gtgcgcgtgctgacgccgctgg 4713441
>dbj|AP004792.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0505A04 Length = 159241 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 161 gacgccgacgccgtacctgttcatcggcttcgccgtggtgatgagcctcatcgcggtggc 220 |||||||||||||||||| ||| | || ||||| ||| ||||| |||||||||||||||| Sbjct: 90636 gacgccgacgccgtaccttttcctggggttcgcggtgatgatgggcctcatcgcggtggc 90695 Query: 221 tctggccgtgctcctctgctcccgccgca 249 ||| |||||| ||||| | ||||||| Sbjct: 90696 gctgctcgtgctggtctgcacgcgccgca 90724 Score = 61.9 bits (31), Expect = 3e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gcccaaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccac 391 |||||||||||| || | |||||||||||| | ||||||||||||||||||||||| Sbjct: 90798 gcccaaggtggtcgtcatcatggccggcgacaccgcgccgtccttcctcgccagcgccaa 90857 Query: 392 gccgctc 398 ||||||| Sbjct: 90858 gccgctc 90864
>dbj|AK107791.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D05, full insert sequence Length = 701 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 161 gacgccgacgccgtacctgttcatcggcttcgccgtggtgatgagcctcatcgcggtggc 220 |||||||||||||||||| ||| | || ||||| ||| ||||| |||||||||||||||| Sbjct: 157 gacgccgacgccgtaccttttcctggggttcgcggtgatgatgggcctcatcgcggtggc 216 Query: 221 tctggccgtgctcctctgctcccgccgca 249 ||| |||||| ||||| | ||||||| Sbjct: 217 gctgctcgtgctggtctgcacgcgccgca 245 Score = 61.9 bits (31), Expect = 3e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 332 gcccaaggtggtggtggtgatggccggcgacgacatgccgtccttcctcgccagcgccac 391 |||||||||||| || | |||||||||||| | ||||||||||||||||||||||| Sbjct: 319 gcccaaggtggtcgtcatcatggccggcgacaccgcgccgtccttcctcgccagcgccaa 378 Query: 392 gccgctc 398 ||||||| Sbjct: 379 gccgctc 385
>gb|DQ245146.1| Zea mays clone 13311 mRNA sequence Length = 688 Score = 46.1 bits (23), Expect = 0.17 Identities = 29/31 (93%) Strand = Plus / Plus Query: 369 ccgtccttcctcgccagcgccacgccgctcg 399 ||||||||| |||||||||||| |||||||| Sbjct: 418 ccgtccttcgtcgccagcgccaagccgctcg 448
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 300 gtgcgcgtgctgacgccgctgga 322 ||||||||||||||||||||||| Sbjct: 1159981 gtgcgcgtgctgacgccgctgga 1159959
>ref|NM_211943.1| Eremothecium gossypii AGR215Cp (AGR215C), mRNA Length = 1149 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 300 gtgcgcgtgctgacgccgctgga 322 ||||||||||||||||||||||| Sbjct: 511 gtgcgcgtgctgacgccgctgga 533
>ref|NM_001063576.1| Oryza sativa (japonica cultivar-group) Os06g0193200 (Os06g0193200) mRNA, complete cds Length = 1758 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 300 gtgcgcgtgctgacgccgctgg 321 |||||||||||||||||||||| Sbjct: 1457 gtgcgcgtgctgacgccgctgg 1436
>gb|DQ872397.1| Triticum aestivum fasciclin-like protein FLA24 mRNA, complete cds Length = 920 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 ctggccgtgctcctctgctccc 243 |||||||||||||||||||||| Sbjct: 37 ctggccgtgctcctctgctccc 58
>gb|BT008953.1| Triticum aestivum clone wdk1c.pk010.j17:fis, full insert mRNA sequence Length = 954 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 ctggccgtgctcctctgctccc 243 |||||||||||||||||||||| Sbjct: 71 ctggccgtgctcctctgctccc 92
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 300 gtgcgcgtgctgacgccgctgg 321 |||||||||||||||||||||| Sbjct: 76061 gtgcgcgtgctgacgccgctgg 76040
>gb|U26948.1|GMU26948 Glycine max ribosomal protein S16 (rps16) gene, partial cds, beta-carboxyltransferase (accD), photosystem I component (psaI), ORF 202 protein (ORF 203), ORF 151 protein (ORF 151), ORF 103 protein (ORF 103), ORF 229 precursor protein (ORF 229), and cytochrome f precursor (petA) genes, chloroplast genes encoding chloroplast proteins, complete cds Length = 5693 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 560 ttatactagtactagaattatt 581 |||||||||||||||||||||| Sbjct: 1242 ttatactagtactagaattatt 1221
>gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 166138 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 attttgtttcttttatactag 568 ||||||||||||||||||||| Sbjct: 139497 attttgtttcttttatactag 139477
>emb|CR734957.2|CNS0GTVG Tetraodon nigroviridis full-length cDNA Length = 1844 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 ccaaggtggtggtggtgatggccgg 358 |||||||||||||||||| |||||| Sbjct: 104 ccaaggtggtggtggtgacggccgg 128
>emb|CR727091.2|CNS0GNYX Tetraodon nigroviridis full-length cDNA Length = 1253 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 ccaaggtggtggtggtgatggccgg 358 |||||||||||||||||| |||||| Sbjct: 266 ccaaggtggtggtggtgacggccgg 290
>emb|CR726668.2|CNS0GNN6 Tetraodon nigroviridis full-length cDNA Length = 1263 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 ccaaggtggtggtggtgatggccgg 358 |||||||||||||||||| |||||| Sbjct: 267 ccaaggtggtggtggtgacggccgg 291
>emb|CR725013.1|CNS0GMD7 Tetraodon nigroviridis full-length cDNA Length = 1227 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 ccaaggtggtggtggtgatggccgg 358 |||||||||||||||||| |||||| Sbjct: 263 ccaaggtggtggtggtgacggccgg 287
>emb|CR685436.2|CNS0FRU0 Tetraodon nigroviridis full-length cDNA Length = 1947 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 ccaaggtggtggtggtgatggccgg 358 |||||||||||||||||| |||||| Sbjct: 229 ccaaggtggtggtggtgacggccgg 253
>emb|CR356246.5| Zebrafish DNA sequence from clone CH211-107O10 in linkage group 7, complete sequence Length = 101758 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 561 tatactagtactagaattattagat 585 |||||||||||||| |||||||||| Sbjct: 85143 tatactagtactagtattattagat 85167
>emb|AL159154.16| Human DNA sequence from clone RP11-428G23 on chromosome 13 Contains part of a novel gene (KIAA0916), complete sequence Length = 124964 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 540 ggagttaaattttgtttcttt 560 ||||||||||||||||||||| Sbjct: 57356 ggagttaaattttgtttcttt 57336
>gb|AF170710.1|AF170710 Lycodichthys dearborni lactate dehydrogenase-A (ldh-a) mRNA, complete cds Length = 1025 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 ccaaggtggtggtggtgatggccgg 358 |||||||||||||||||| |||||| Sbjct: 277 ccaaggtggtggtggtgacggccgg 301
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 ttatactagtactagaattat 580 ||||||||||||||||||||| Sbjct: 57307 ttatactagtactagaattat 57287 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 108,821,330 Number of extensions: 7275425 Number of successful extensions: 195262 Number of sequences better than 10.0: 26 Number of HSP's gapped: 195258 Number of HSP's successfully gapped: 35 Length of query: 696 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 674 Effective length of database: 18,508,616,841 Effective search space: 12474807750834 Effective search space used: 12474807750834 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
