Clone Information

BLAST Search Result

Clone Name	FLbaf106m22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Q9UK45:LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 - Hom...	112	1e-24
2	Q9CQQ8:LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 - Mus...	111	3e-24
3	P53905:LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 - Sac...	80	7e-15
4	O82221:RUXG_ARATH Probable small nuclear ribonucleoprotein G - A...	58	3e-08
5	P62309:RUXG_MOUSE Small nuclear ribonucleoprotein G - Mus muscul...	58	4e-08
6	P62308:RUXG_HUMAN Small nuclear ribonucleoprotein G - Homo sapie...	58	4e-08
7	Q9VXE0:RUXG_DROME Probable small nuclear ribonucleoprotein G - D...	58	4e-08
8	Q9N4G9:RUXG_CAEEL Probable small nuclear ribonucleoprotein G - C...	58	4e-08
9	Q3ZBL0:RUXG_BOVIN Small nuclear ribonucleoprotein G - Bos taurus...	58	4e-08
10	O74966:RUXG_SCHPO Probable small nuclear ribonucleoprotein G - S...	54	4e-07
11	P24715:RUXG_MEDSA Probable small nuclear ribonucleoprotein G - M...	53	1e-06
12	P57743:LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 - Sac...	52	2e-06
13	P40204:RUXG_YEAST Small nuclear ribonucleoprotein G - Saccharomy...	51	4e-06
14	Q9YEQ5:RUXX_AERPE Putative snRNP Sm-like protein - Aeropyrum pernix	48	3e-05
15	Q9Y7M4:LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein L...	48	4e-05
16	O29386:RUXX_ARCFU Putative snRNP Sm-like protein - Archaeoglobus...	47	7e-05
17	Q5RCP3:LSM8_PONPY U6 snRNA-associated Sm-like protein LSm8 - Pon...	46	1e-04
18	Q6ZWM4:LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 - Mus...	46	1e-04
19	O95777:LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 - Hom...	46	1e-04
20	Q3ZCE0:LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 - Bos...	46	1e-04
21	O74483:LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 - Sch...	45	3e-04
22	P62311:LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 - Mus...	45	3e-04
23	P62310:LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 - Hom...	45	3e-04
24	Q32PE9:LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 - Bos...	45	3e-04
25	O26745:RUXX_METTH Putative snRNP Sm-like protein - Methanobacter...	44	8e-04
26	Q8PZZ9:RUXX_METMA Putative snRNP Sm-like protein - Methanosarcin...	44	8e-04
27	Q8TL47:RUXX_METAC Putative snRNP Sm-like protein - Methanosarcin...	42	0.002
28	O74016:RUXX_PYRHO Putative snRNP Sm-like protein - Pyrococcus ho...	39	0.014
29	Q8U0P4:RUXX_PYRFU Putative snRNP Sm-like protein - Pyrococcus fu...	39	0.019
30	Q9V0Y8:RUXX_PYRAB Putative snRNP Sm-like protein - Pyrococcus ab...	39	0.019
31	Q5JIE0:RUXX_PYRKO Putative snRNP Sm-like protein - Pyrococcus ko...	39	0.024
32	Q12330:RUXE_YEAST Small nuclear ribonucleoprotein E - Saccharomy...	39	0.024
33	P40089:LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 - Sac...	37	0.054
34	P47017:LSM1_YEAST Sm-like protein LSm1 - Saccharomyces cerevisia...	36	0.12
35	P57670:RUXX_THEAC Putative snRNP Sm-like protein - Thermoplasma ...	35	0.21
36	P87173:YB18_SCHPO Uncharacterized protein C3D6.08c - Schizosacch...	35	0.27
37	Q7TYJ1:TIG_MYCBO Trigger factor - Mycobacterium bovis	34	0.46
38	Q8VC85:LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 - Mus...	34	0.60
39	O15116:LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 - Hom...	34	0.60
40	Q5E9Z8:LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 - Bos...	34	0.60
41	Q8SQH7:LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein -...	33	1.3
42	Q9C777:YIPL3_ARATH Protein yippee-like At3g11230 - Arabidopsis t...	32	1.7
43	Q9VLV5:RUXE_DROME Probable small nuclear ribonucleoprotein E - D...	32	1.7
44	O48609:RRP3_HORVU Plastid-specific 30S ribosomal protein 3, chlo...	32	1.7
45	P34450:ZTF1_CAEEL Zinc finger transcription factor family protei...	32	2.3
46	P62305:RUXE_MOUSE Small nuclear ribonucleoprotein E - Mus muscul...	32	2.3
47	P62304:RUXE_HUMAN Small nuclear ribonucleoprotein E - Homo sapie...	32	2.3
48	P62303:RUXE_CHICK Small nuclear ribonucleoprotein E - Gallus gal...	32	2.3
49	Q5R628:LSM5_PONPY U6 snRNA-associated Sm-like protein LSm5 - Pon...	32	2.3
50	P62322:LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 - Mus...	32	2.3
51	Q9Y4Y9:LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 - Hom...	32	2.3
52	Q2HJH0:LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 - Bos...	32	2.3
53	O53189:TIG_MYCTU Trigger factor - Mycobacterium tuberculosis	32	3.0
54	Q73XM7:TIG_MYCPA Trigger factor - Mycobacterium paratuberculosis	32	3.0
55	Q7ZUG0:RUXE_DANRE Small nuclear ribonucleoprotein E - Danio reri...	31	3.9
56	P48571:LEU1_BUCRP 2-isopropylmalate synthase - Buchnera aphidico...	31	3.9
57	Q60636:PRDM1_MOUSE PR domain zinc finger protein 1 - Mus musculu...	31	5.1
58	P38203:LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 - Sac...	30	6.6
59	Q9EVI8:LEU1_BUCUN 2-isopropylmalate synthase - Buchnera aphidico...	30	8.7

>Q9UK45:LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 - Homo sapiens (Human)|
          Length = 103
 Score =  112 bits (280), Expect = 1e-24
 Identities = 51/91 (56%), Positives = 70/91 (76%)
 Frame = +3

Query: 171 RKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTK 350
           +KE+ LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E  R+ DD  KL+  
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 351 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFL 443
           TRQLGL+VCRGT+V+L+ P DG + I NPF+
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFI 98

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>Q9CQQ8:LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 - Mus musculus (Mouse)|
          Length = 103

 Score =  111 bits (277), Expect = 3e-24
 Identities = 51/91 (56%), Positives = 70/91 (76%)
 Frame = +3

Query: 171 RKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTK 350
           +KE+ LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD  +E  R+ DD  KL+  
Sbjct: 8   KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 351 TRQLGLIVCRGTAVMLVSPTDGTDEIANPFL 443
           TRQLGL+VCRGT+V+L+ P DG + I NPF+
Sbjct: 68  TRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98

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>P53905:LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 115

 Score = 80.1 bits (196), Expect = 7e-15
 Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
 Frame = +3

Query: 171 RKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLK---L 341
           ++E  LDLAK+ D  ++VKL GG+ V G LKGYDQL+NLVLD+ VE     DD      +
Sbjct: 23  KREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELI 82

Query: 342 STKTRQLGLIVCRGTAVMLVSPTDGTD 422
           S   R+LGL V RGT ++ +S  +G+D
Sbjct: 83  SKNARKLGLTVIRGTILVSLSSAEGSD 109

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>O82221:RUXG_ARATH Probable small nuclear ribonucleoprotein G - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 80

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 30/71 (42%), Positives = 46/71 (64%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D  VE        +  + KT  +G+
Sbjct: 9   DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 59

Query: 369 IVCRGTAVMLV 401
           +V RG +++ V
Sbjct: 60  VVIRGNSIVTV 70

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>P62309:RUXG_MOUSE Small nuclear ribonucleoprotein G - Mus musculus (Mouse)|
          Length = 76

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 27/71 (38%), Positives = 45/71 (63%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           +L KF+DK + +KL GGR V G L+G+D  +NLV+DE VE        +  S +   +G+
Sbjct: 8   ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59

Query: 369 IVCRGTAVMLV 401
           +V RG +++++
Sbjct: 60  VVIRGNSIIML 70

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>P62308:RUXG_HUMAN Small nuclear ribonucleoprotein G - Homo sapiens (Human)|
          Length = 76

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 27/71 (38%), Positives = 45/71 (63%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           +L KF+DK + +KL GGR V G L+G+D  +NLV+DE VE        +  S +   +G+
Sbjct: 8   ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59

Query: 369 IVCRGTAVMLV 401
           +V RG +++++
Sbjct: 60  VVIRGNSIIML 70

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>Q9VXE0:RUXG_DROME Probable small nuclear ribonucleoprotein G - Drosophila|
           melanogaster (Fruit fly)
          Length = 76

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 29/75 (38%), Positives = 48/75 (64%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           ++ K++DK + +KL GGR VTG L+G+D  +N+VLD+ VE         K +TK   +G+
Sbjct: 8   EVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEE-------CKDNTK-NNIGM 59

Query: 369 IVCRGTAVMLVSPTD 413
           +V RG ++++V   D
Sbjct: 60  VVIRGNSIVMVEALD 74

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>Q9N4G9:RUXG_CAEEL Probable small nuclear ribonucleoprotein G - Caenorhabditis elegans|
          Length = 77

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 27/75 (36%), Positives = 49/75 (65%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           +L K++DK + +KL G R+V+G L+G+D  +N+V+DEAVE +++          +  LG+
Sbjct: 8   ELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGG--------SVNLGM 59

Query: 369 IVCRGTAVMLVSPTD 413
            V RG +V+++ P +
Sbjct: 60  TVIRGNSVVIMEPKE 74

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>Q3ZBL0:RUXG_BOVIN Small nuclear ribonucleoprotein G - Bos taurus (Bovine)|
          Length = 76

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 27/71 (38%), Positives = 45/71 (63%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           +L KF+DK + +KL GGR V G L+G+D  +NLV+DE VE        +  S +   +G+
Sbjct: 8   ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--------MATSGQQNNIGM 59

Query: 369 IVCRGTAVMLV 401
           +V RG +++++
Sbjct: 60  VVIRGNSIIML 70

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>O74966:RUXG_SCHPO Probable small nuclear ribonucleoprotein G - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 77

 Score = 54.3 bits (129), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 48/80 (60%)
 Frame = +3

Query: 174 KETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKT 353
           K  A DL K++D+ V V+L G R+V G L+GYD  LN+VL++++E         K+  + 
Sbjct: 3   KAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEE--------KVDGEK 54

Query: 354 RQLGLIVCRGTAVMLVSPTD 413
            ++G +  RG +V+++   D
Sbjct: 55  VKIGSVAIRGNSVIMIETLD 74

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>P24715:RUXG_MEDSA Probable small nuclear ribonucleoprotein G - Medicago sativa|
           (Alfalfa)
          Length = 81

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE-SEREQDDPLKLSTKTRQLGL 368
           L K++DK +Q+ L   R + GTL+G+DQ +NLV+D  VE +  E++D          +G+
Sbjct: 10  LKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKND----------IGM 59

Query: 369 IVCRGTAVMLV 401
           +V RG +V+ V
Sbjct: 60  VVIRGNSVVTV 70

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>P57743:LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 89

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = +3

Query: 177 ETALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKT 353
           ET LDL K  +D+ V +KL G R + GTL+ +D   N+VL +AVE+  + ++  +LS   
Sbjct: 2   ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNE-ELSESE 60

Query: 354 RQLGLIVCRGTAVMLVSPTDGTDE 425
           R+  ++  RG  V L+S     D+
Sbjct: 61  RRCEMVFIRGDTVTLISTPSEDDD 84

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>P40204:RUXG_YEAST Small nuclear ribonucleoprotein G - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 77

 Score = 51.2 bits (121), Expect = 4e-06
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGL 368
           +L K++DK + + + G R+V G L+GYD  LN+VLD+A+E   E  DP        QLGL
Sbjct: 6   ELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGE--DP----ANNHQLGL 59

Query: 369 -IVCRGTAVMLVSPTD 413
             V RG +++ +   D
Sbjct: 60  QTVIRGNSIISLEALD 75

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>Q9YEQ5:RUXX_AERPE Putative snRNP Sm-like protein - Aeropyrum pernix|
          Length = 77

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 27/69 (39%), Positives = 40/69 (57%)
 Frame = +3

Query: 201 FVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLIVCR 380
           +VD  V VKL  G ++ G LK YDQ LN++L +A E            T  R+LGL + R
Sbjct: 16  YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIG---------ETSIRRLGLTLVR 66

Query: 381 GTAVMLVSP 407
           G +V++++P
Sbjct: 67  GDSVVVITP 75

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>Q9Y7M4:LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 93

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
 Frame = +3

Query: 186 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE-----SEREQDDPLKLST 347
           LDL +  +D+ V VKL G R++ G L  YD+ LN+VL +A E      + E D    L T
Sbjct: 11  LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70

Query: 348 KTRQLGLIVCRGTAVMLVSP 407
             +   ++  RG +V+L++P
Sbjct: 71  IRKHYEMLFVRGDSVILIAP 90

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>O29386:RUXX_ARCFU Putative snRNP Sm-like protein - Archaeoglobus fulgidus|
          Length = 77

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 28/67 (41%), Positives = 38/67 (56%)
 Frame = +3

Query: 216 VQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLIVCRGTAVM 395
           V V+L GGR+  GTL GYD  +NLVL +A E +  +          R++G +V RG  V+
Sbjct: 17  VIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE--------VVRKVGSVVIRGDTVV 68

Query: 396 LVSPTDG 416
            VSP  G
Sbjct: 69  FVSPAPG 75

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>Q5RCP3:LSM8_PONPY U6 snRNA-associated Sm-like protein LSm8 - Pongo pygmaeus|
           (Orangutan)
          Length = 96

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLI 371
           L  ++++ V V  + GR + GTLKG+DQ +NL+LDE+ E        ++       LGL 
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVV----LGLY 60

Query: 372 VCRGTAVMLVSPTD 413
           + RG  V ++   D
Sbjct: 61  IVRGDNVAVIGEID 74

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>Q6ZWM4:LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 - Mus musculus (Mouse)|
          Length = 96

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLI 371
           L  ++++ V V  + GR + GTLKG+DQ +NL+LDE+ E        ++       LGL 
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVV----LGLY 60

Query: 372 VCRGTAVMLVSPTD 413
           + RG  V ++   D
Sbjct: 61  IVRGDNVAVIGEID 74

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>O95777:LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 - Homo sapiens (Human)|
          Length = 96

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLI 371
           L  ++++ V V  + GR + GTLKG+DQ +NL+LDE+ E        ++       LGL 
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVV----LGLY 60

Query: 372 VCRGTAVMLVSPTD 413
           + RG  V ++   D
Sbjct: 61  IVRGDNVAVIGEID 74

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>Q3ZCE0:LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 - Bos taurus (Bovine)|
          Length = 96

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLI 371
           L  ++++ V V  + GR + GTLKG+DQ +NL+LDE+ E        ++       LGL 
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVV----LGLY 60

Query: 372 VCRGTAVMLVSPTD 413
           + RG  V ++   D
Sbjct: 61  IVRGDNVAVIGEID 74

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>O74483:LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 94

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 26/72 (36%), Positives = 40/72 (55%)
 Frame = +3

Query: 186 LDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLG 365
           + LA F+++ VQV    GR V G+LKG+D   NL+L ++ E     D  +    +T  LG
Sbjct: 1   MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDM----ETIPLG 56

Query: 366 LIVCRGTAVMLV 401
           + + RG  V +V
Sbjct: 57  VYLLRGENVAMV 68

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>P62311:LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 - Mus musculus (Mouse)|
          Length = 102

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
 Frame = +3

Query: 177 ETALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AVESEREQDDPL 335
           E  LDL +  +D+ + VK+   R++ G L  YDQ LN++L +       +E + E  + +
Sbjct: 15  EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 336 KLSTKTRQLGLIVCRGTAVMLVSP 407
             STK R + ++  RG  V+LV+P
Sbjct: 75  YKSTK-RNIPMLFVRGDGVVLVAP 97

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>P62310:LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 - Homo sapiens (Human)|
          Length = 102

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
 Frame = +3

Query: 177 ETALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AVESEREQDDPL 335
           E  LDL +  +D+ + VK+   R++ G L  YDQ LN++L +       +E + E  + +
Sbjct: 15  EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 336 KLSTKTRQLGLIVCRGTAVMLVSP 407
             STK R + ++  RG  V+LV+P
Sbjct: 75  YKSTK-RNIPMLFVRGDGVVLVAP 97

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>Q32PE9:LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 - Bos taurus (Bovine)|
          Length = 102

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
 Frame = +3

Query: 177 ETALDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE------AVESEREQDDPL 335
           E  LDL +  +D+ + VK+   R++ G L  YDQ LN++L +       +E + E  + +
Sbjct: 15  EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEI 74

Query: 336 KLSTKTRQLGLIVCRGTAVMLVSP 407
             STK R + ++  RG  V+LV+P
Sbjct: 75  YKSTK-RNIPMLFVRGDGVVLVAP 97

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>O26745:RUXX_METTH Putative snRNP Sm-like protein - Methanobacterium|
           thermoautotrophicum
          Length = 81

 Score = 43.5 bits (101), Expect = 8e-04
 Identities = 25/72 (34%), Positives = 40/72 (55%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLI 371
           L   ++  V +KL G R+  G LK +D  +NLVL++A E E  +         TR+LG +
Sbjct: 18  LGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE--------VTRRLGTV 69

Query: 372 VCRGTAVMLVSP 407
           + RG  ++ +SP
Sbjct: 70  LIRGDNIVYISP 81

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>Q8PZZ9:RUXX_METMA Putative snRNP Sm-like protein - Methanosarcina mazei|
           (Methanosarcina frisia)
          Length = 72

 Score = 43.5 bits (101), Expect = 8e-04
 Identities = 35/82 (42%), Positives = 44/82 (53%)
 Frame = +3

Query: 162 MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL 341
           MA R    L+ A  +D  V V+L G R+  G LKGYD  +NLVLD A E  RE +   K 
Sbjct: 1   MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNA-EELREGEVVSKF 57

Query: 342 STKTRQLGLIVCRGTAVMLVSP 407
           S+       +V RG  V+ VSP
Sbjct: 58  SS-------VVIRGDNVVYVSP 72

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>Q8TL47:RUXX_METAC Putative snRNP Sm-like protein - Methanosarcina acetivorans|
          Length = 72

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 34/82 (41%), Positives = 44/82 (53%)
 Frame = +3

Query: 162 MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL 341
           MA R    L+ A  +D  V V+L G R+  G LKGYD  +NLVLD A E  R+ +   K 
Sbjct: 1   MANRPLDILNNA--LDTPVIVRLKGAREFRGELKGYDIHMNLVLDNA-EELRDGEVVSKF 57

Query: 342 STKTRQLGLIVCRGTAVMLVSP 407
           S+       +V RG  V+ VSP
Sbjct: 58  SS-------VVIRGDNVVYVSP 72

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>O74016:RUXX_PYRHO Putative snRNP Sm-like protein - Pyrococcus horikoshii|
          Length = 75

 Score = 39.3 bits (90), Expect = 0.014
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 177 ETALDLA-KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKT 353
           E  LD+  + +DK V V L  G +  G L GYD  LN+VL +A   E  QD  +      
Sbjct: 3   ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMVQDGEV-----V 54

Query: 354 RQLGLIVCRGTAVMLVSPTD 413
           ++ G IV RG  V+ +SPT+
Sbjct: 55  KKYGKIVIRGDNVLAISPTE 74

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>Q8U0P4:RUXX_PYRFU Putative snRNP Sm-like protein - Pyrococcus furiosus|
          Length = 76

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +3

Query: 177 ETALDLA-KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKT 353
           E  LD+  K +DK V V L  G +  G L GYD  LN+VL  A   E  QD  +      
Sbjct: 3   ERPLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA---ELLQDGEV-----V 54

Query: 354 RQLGLIVCRGTAVMLVSPTD 413
           ++ G IV RG  V+ +SPT+
Sbjct: 55  KKYGKIVIRGDNVLAISPTE 74

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>Q9V0Y8:RUXX_PYRAB Putative snRNP Sm-like protein - Pyrococcus abyssi|
          Length = 75

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +3

Query: 177 ETALDLA-KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKT 353
           E  LD+  + +DK V V L  G +  G L GYD  LN+VL +A   E  QD  +      
Sbjct: 3   ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEV-----V 54

Query: 354 RQLGLIVCRGTAVMLVSPTD 413
           ++ G IV RG  V+ +SPT+
Sbjct: 55  KRYGKIVIRGDNVLAISPTE 74

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>Q5JIE0:RUXX_PYRKO Putative snRNP Sm-like protein - Pyrococcus kodakaraensis|
           (Thermococcus kodakaraensis)
          Length = 76

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +3

Query: 177 ETALDLA-KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKT 353
           E  LD+  K +DK V V L  G +  G L GYD  LN+VL +A   E  QD  +      
Sbjct: 3   ERPLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA---ELIQDGEV-----V 54

Query: 354 RQLGLIVCRGTAVMLVSPTD 413
           ++ G IV RG  V+ +SP +
Sbjct: 55  KKYGKIVIRGDNVLALSPVE 74

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>Q12330:RUXE_YEAST Small nuclear ribonucleoprotein E - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 94

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +3

Query: 237 GRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLIVCRGTAVMLVSPTD 413
           G ++ G + G+D+ +N+V+DEAVE      D  +   K   LG I+ +G  + L++  D
Sbjct: 36  GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94

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>P40089:LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 93

 Score = 37.4 bits (85), Expect = 0.054
 Identities = 18/70 (25%), Positives = 38/70 (54%)
 Frame = +3

Query: 198 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLIVC 377
           K +++ V + L   R+  GTL G+D  +N++L++AVE   + +D  +     +  G ++ 
Sbjct: 14  KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLL 73

Query: 378 RGTAVMLVSP 407
            G  + ++ P
Sbjct: 74  SGNNIAILVP 83

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>P47017:LSM1_YEAST Sm-like protein LSm1 - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 172

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 23/78 (29%), Positives = 40/78 (51%)
 Frame = +3

Query: 180 TALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQ 359
           T   +   VD+ + V L  GR + G L+ +DQ  NL+L + VE     ++  K + + R 
Sbjct: 42  TTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEEN-KYAEEDR- 99

Query: 360 LGLIVCRGTAVMLVSPTD 413
            G+ + RG  V+++   D
Sbjct: 100 -GIFMIRGENVVMLGEVD 116

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>P57670:RUXX_THEAC Putative snRNP Sm-like protein - Thermoplasma acidophilum|
          Length = 83

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQLGLI 371
           L   + + V + + G R+ +G L+GYD  +N+VL  A E    ++  +           +
Sbjct: 14  LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGV--------YDRV 65

Query: 372 VCRGTAVMLVSPTDG 416
           + RG  V+ VSP+ G
Sbjct: 66  LVRGDNVIFVSPSKG 80

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>P87173:YB18_SCHPO Uncharacterized protein C3D6.08c - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 140

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +3

Query: 180 TALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQ 359
           T+  L  +VD+ V V L  G+++ G L+ +DQ  NL+L   +E     D    +      
Sbjct: 12  TSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDR---- 67

Query: 360 LGLIVCRGTAVMLVSPTD 413
            G+ + RG  V+L+   D
Sbjct: 68  -GVYIVRGENVVLLGELD 84

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>Q7TYJ1:TIG_MYCBO Trigger factor - Mycobacterium bovis|
          Length = 466

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = -3

Query: 241 RPPVSLTWTPLSTNLARSSAVSLRPAISLPATSAESSSADPLSPQARNLP*KSIAAAARE 62
           RP + +T      +L  ++ V +RP ISLP  SA + S DP+     ++  +  +   R 
Sbjct: 90  RPNIEVTKKEYGQDLQFTAEVDIRPKISLPDLSALTVSVDPIEIGEDDVDAELQSLRTRF 149

Query: 61  GTVSCVGR 38
           GT++ V R
Sbjct: 150 GTLTAVDR 157

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>Q8VC85:LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 - Mus musculus (Mouse)|
          Length = 133

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE----SEREQDDPLKLSTKTRQ 359
           L + +DK   V L  GR + G L+  DQ  NLVL + VE     ++  D P         
Sbjct: 10  LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP--------- 60

Query: 360 LGLIVCRGTAVMLVSPTDGTDEIANP 437
            G+ V RG  V+L+   D   E   P
Sbjct: 61  RGIFVVRGENVVLLGEIDLEKESDTP 86

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>O15116:LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 - Homo sapiens (Human)|
          Length = 133

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE----SEREQDDPLKLSTKTRQ 359
           L + +DK   V L  GR + G L+  DQ  NLVL + VE     ++  D P         
Sbjct: 10  LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP--------- 60

Query: 360 LGLIVCRGTAVMLVSPTDGTDEIANP 437
            G+ V RG  V+L+   D   E   P
Sbjct: 61  RGIFVVRGENVVLLGEIDLEKESDTP 86

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>Q5E9Z8:LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 - Bos taurus (Bovine)|
          Length = 133

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVE----SEREQDDPLKLSTKTRQ 359
           L + +DK   V L  GR + G L+  DQ  NLVL + VE     ++  D P         
Sbjct: 10  LIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP--------- 60

Query: 360 LGLIVCRGTAVMLVSPTDGTDEIANP 437
            G+ V RG  V+L+   D   E   P
Sbjct: 61  RGIFVVRGENVVLLGEIDLEKESDTP 86

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>Q8SQH7:LSMH_ENCCU Probable U6 snRNA-associated Sm-like protein - Encephalitozoon|
           cuniculi
          Length = 70

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 192 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVL 293
           L  ++ + V+VK   G   TGTL+G+D+ +NL+L
Sbjct: 8   LKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML 41

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>Q9C777:YIPL3_ARATH Protein yippee-like At3g11230 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 129

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 558 CSACADELAICIELLKTSFQSSHGCMYL 641
           C  C   LA+C +++  SFQS HG  YL
Sbjct: 16  CKHCKTNLALCDDVVSKSFQSRHGKAYL 43

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>Q9VLV5:RUXE_DROME Probable small nuclear ribonucleoprotein E - Drosophila|
           melanogaster (Fruit fly)
          Length = 94

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
 Frame = +3

Query: 243 QVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQ---LGLIVCRG---TAVMLVS 404
           ++ G + G+D+ +NLVLD+A E          +  KTRQ   LG I+ +G   T +  VS
Sbjct: 41  RIEGHIVGFDEYMNLVLDDAEE----------VYVKTRQRRNLGRIMLKGDNITLIQNVS 90

Query: 405 PT 410
           PT
Sbjct: 91  PT 92

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>O48609:RRP3_HORVU Plastid-specific 30S ribosomal protein 3, chloroplast precursor -|
           Hordeum vulgare (Barley)
          Length = 181

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 214 PLSTNLARSSAVSLRPAISLPATSAESSSADPLSPQARNLP*KSIAAAAREGTVSCV 44
           P+S + A + A++ RP +SLP  S  SSS+  +  ++R  P +S+ +       + V
Sbjct: 3   PMSVHPATTPALASRPRVSLPRPSTPSSSSSLVHLKSRRPPLRSLRSLTAAAAAAAV 59

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>P34450:ZTF1_CAEEL Zinc finger transcription factor family protein 1 - Caenorhabditis|
           elegans
          Length = 582

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = -3

Query: 241 RPPVSLTWTPLSTNLARSSAVSLRPAISLPATSAESSSADPLS 113
           RPPVS  + PL   + R     L    SLP++SA SSS DP +
Sbjct: 449 RPPVSYGYDPL---IGRYPDFQLMSQSSLPSSSASSSSYDPFA 488

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>P62305:RUXE_MOUSE Small nuclear ribonucleoprotein E - Mus musculus (Mouse)|
          Length = 92

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243 QVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTR-QLGLIVCRGTAVMLV 401
           ++ G + G+D+ +NLVLD+A E        +   TK+R QLG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87

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>P62304:RUXE_HUMAN Small nuclear ribonucleoprotein E - Homo sapiens (Human)|
          Length = 92

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243 QVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTR-QLGLIVCRGTAVMLV 401
           ++ G + G+D+ +NLVLD+A E        +   TK+R QLG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87

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>P62303:RUXE_CHICK Small nuclear ribonucleoprotein E - Gallus gallus (Chicken)|
          Length = 92

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243 QVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTR-QLGLIVCRGTAVMLV 401
           ++ G + G+D+ +NLVLD+A E        +   TK+R QLG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87

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>Q5R628:LSM5_PONPY U6 snRNA-associated Sm-like protein LSm5 - Pongo pygmaeus|
           (Orangutan)
          Length = 91

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 198 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESE 314
           K +   + + +   +++ GTL G+D  +N+VL++  E E
Sbjct: 20  KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE 58

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>P62322:LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 - Mus musculus (Mouse)|
          Length = 91

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 198 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESE 314
           K +   + + +   +++ GTL G+D  +N+VL++  E E
Sbjct: 20  KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE 58

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>Q9Y4Y9:LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 - Homo sapiens (Human)|
          Length = 91

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 198 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESE 314
           K +   + + +   +++ GTL G+D  +N+VL++  E E
Sbjct: 20  KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE 58

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>Q2HJH0:LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 - Bos taurus (Bovine)|
          Length = 91

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 198 KFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESE 314
           K +   + + +   +++ GTL G+D  +N+VL++  E E
Sbjct: 20  KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFE 58

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>O53189:TIG_MYCTU Trigger factor - Mycobacterium tuberculosis|
          Length = 466

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -3

Query: 241 RPPVSLTWTPLSTNLARSSAVSLRPAISLPATSAESSSADPLSPQARNLP*KSIAAAARE 62
           RP + +T      +L  ++ V +RP IS P  SA + S DP+     ++  +  +   R 
Sbjct: 90  RPNIEVTKKEYGQDLQFTAEVDIRPKISPPDLSALTVSVDPIEIGEDDVDAELQSLRTRF 149

Query: 61  GTVSCVGR 38
           GT++ V R
Sbjct: 150 GTLTAVDR 157

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>Q73XM7:TIG_MYCPA Trigger factor - Mycobacterium paratuberculosis|
          Length = 464

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -3

Query: 241 RPPVSLTWTPLSTNLARSSAVSLRPAISLPATSAESSSADPLSPQARNLP*KSIAAAARE 62
           +P + +T       LA ++ V +RP ++LP   A   S DP+     ++  +  +  AR 
Sbjct: 90  QPEIEVTKKEYGQELAFTAEVDVRPELNLPDPGALKISVDPIEVTDEDVDAELQSLRARF 149

Query: 61  GTVSCVGR 38
           GT++ V R
Sbjct: 150 GTLTGVER 157

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>Q7ZUG0:RUXE_DANRE Small nuclear ribonucleoprotein E - Danio rerio (Zebrafish)|
           (Brachydanio rerio)
          Length = 92

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243 QVTGTLKGYDQLLNLVLDEAVESEREQDDPLKLSTKTRQ-LGLIVCRGTAVMLV 401
           ++ G + G+D+ +NLVLD+A E        + + TK R+ LG I+ +G  + L+
Sbjct: 42  RIEGCIIGFDEYMNLVLDDAEE--------VHMKTKNRKPLGRIMLKGDNITLL 87

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>P48571:LEU1_BUCRP 2-isopropylmalate synthase - Buchnera aphidicola subsp.|
           Rhopalosiphum padi
          Length = 518

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGY-DQLLNLVLDEAVESEREQDDPLKLSTKTR 356
           DL   V   +     G RQ+ GT+ G  ++  N  L+E + + + ++D L +STK +
Sbjct: 206 DLGMAVGNSISAIQAGARQIEGTINGIGERAGNTALEEVIIAIKVREDVLGVSTKIK 262

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>Q60636:PRDM1_MOUSE PR domain zinc finger protein 1 - Mus musculus (Mouse)|
          Length = 856

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 235 PVSLTWTPLSTNLARSSAVSLRPAISLPATSAESSSADPLSPQARNLP 92
           P  +T +PL ++   S   S  P  SL ++S  SS  + +SP A  LP
Sbjct: 353 PTYITHSPLPSSTTPSPPASSSPEQSLKSSSPHSSPGNTVSPLAPGLP 400

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>P38203:LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 95

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 204 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLD 296
           VD+ V V+L    ++ GTL+  DQ LNL LD
Sbjct: 11  VDQEVVVELKNDIEIKGTLQSVDQFLNLKLD 41

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>Q9EVI8:LEU1_BUCUN 2-isopropylmalate synthase - Buchnera aphidicola subsp. Uroleucon|
           sonchi
          Length = 502

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 189 DLAKFVDKGVQVKLTGGRQVTGTLKGY-DQLLNLVLDEAVESEREQDDPLKLST 347
           DL   V   +     G RQ+ GT+ G  ++  N  L+E + + + ++D L LST
Sbjct: 193 DLGMAVGNSISAIQAGARQIEGTINGIGERAGNTALEEVIMAIKVREDILGLST 246


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 109,836,545
Number of extensions: 2244277
Number of successful extensions: 6221
Number of sequences better than 10.0: 59
Number of HSP's gapped: 6212
Number of HSP's successfully gapped: 59
Length of query: 231
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 122
Effective length of database: 70,788,284
Effective search space: 8636170648
Effective search space used: 8636170648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result