ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf106i08 |
|---|---|
| Clone Library Name | barley_pub |
>Q6DJE4:CPSF5_XENLA Cleavage and polyadenylation specificity factor 5 - Xenopus laevis| (African clawed frog) Length = 227 Score = 159 bits (403), Expect = 1e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVQQDWVIDDCIGNWWRPNFEP 155 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 216 PQLLSRFNF 224
>Q7T3C6:CPSF5_DANRE Cleavage and polyadenylation specificity factor 5 - Danio rerio| (Zebrafish) (Brachydanio rerio) Length = 228 Score = 159 bits (403), Expect = 1e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 38 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 98 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVKQDWVIDDCIGNWWRPNFEP 156 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 217 PQLLSRFNF 225
>Q4KM65:CPSF5_RAT Cleavage and polyadenylation specificity factor 5 - Rattus| norvegicus (Rat) Length = 227 Score = 158 bits (399), Expect = 3e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 216 PQLLSRFNF 224
>Q5RAI8:CPSF5_PONPY Cleavage and polyadenylation specificity factor 5 - Pongo pygmaeus| (Orangutan) Length = 227 Score = 158 bits (399), Expect = 3e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 216 PQLLSRFNF 224
>Q9CQF3:CPSF5_MOUSE Cleavage and polyadenylation specificity factor 5 - Mus musculus| (Mouse) Length = 227 Score = 158 bits (399), Expect = 3e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 216 PQLLSRFNF 224
>O43809:CPSF5_HUMAN Cleavage and polyadenylation specificity factor 5 - Homo sapiens| (Human) Length = 227 Score = 158 bits (399), Expect = 3e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 216 PQLLSRFNF 224
>Q3ZCA2:CPSF5_BOVIN Cleavage and polyadenylation specificity factor 5 - Bos taurus| (Bovine) Length = 227 Score = 158 bits (399), Expect = 3e-38 Identities = 83/189 (43%), Positives = 113/189 (59%) Frame = +2 Query: 122 VAIYPLCRYYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVLL 301 + +YPL Y FG K+ + A R R++ F G+R V GVL+V PHVLL Sbjct: 37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96 Query: 302 LQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGMWWRSEFDA 481 LQ+ + F LPGG L P E +++GLKR ++ L +D W I +CIG WWR F+ Sbjct: 97 LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQD-GVLQDWVIDDCIGNWWRPNFEP 155 Query: 482 RPFPYPPPNTRASKECVKLFLVRLPMARQFVVPRNLKLLAVPLSQIHDNAQVYGPIISAI 661 +PY P + KE KLFLV+L F VP+N KL+A PL +++DNA YGPIIS++ Sbjct: 156 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 215 Query: 662 PNLLSKFSF 688 P LLS+F+F Sbjct: 216 PQLLSRFNF 224
>Q8CHC4:SYNJ1_MOUSE Synaptojanin-1 - Mus musculus (Mouse)| Length = 1574 Score = 36.6 bits (83), Expect = 0.14 Identities = 41/136 (30%), Positives = 50/136 (36%), Gaps = 6/136 (4%) Frame = +1 Query: 247 LRPWRPAG-RAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRR 423 L P RP R V PAR AP P RPP ARSP P A ++ G G+ Sbjct: 1100 LEPKRPPPPRPVAPPARPAP---------PQRPPPPSGARSPAP---ARKEFGGVGAPPS 1147 Query: 424 PPLADRRVHWHVVEIRIRCQAISISASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQAPSR 603 P +A R I +A K + G G GA P P+R Sbjct: 1148 PGVARR---------EIEAPKSPGTARKDNIGRNQPSPQAGLAGPGPAGYGAARPTIPAR 1198 Query: 604 -----APVPDSRQCSG 636 AP +R C+G Sbjct: 1199 AGVISAPQSQARVCAG 1214
>Q86SH2:ZAR1_HUMAN Zygote arrest 1 - Homo sapiens (Human)| Length = 424 Score = 35.4 bits (80), Expect = 0.32 Identities = 42/165 (25%), Positives = 59/165 (35%), Gaps = 14/165 (8%) Frame = +1 Query: 256 WRPAGRAVGSPARAAPAGQEL---LLPAPGRPPQACRARSPRPETQALQQASG*GSKRRP 426 W P R A G+ L +PG+PP A RAR +A G S R P Sbjct: 253 WEQPADGPELPPREAQEGEAAPRSALRSPGQPPSAGRARDGGDGREAAVAGEG-PSPRSP 311 Query: 427 PLADRRVHWHVVEIR---IRCQAISI--SASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQ 591 L R+ + +E + C+ +I ++ C+QG K Q R ++ Sbjct: 312 ELGKERLRFQFLEQKYGYYHCKDCNIRWESAYVWCVQGTNKVYFKQFC-----RTCQKSY 366 Query: 592 APSRAPVPDSRQCS------GVWANHICNSESALQVLLQRCKGLR 708 P R + C V H+ Q L RCKG R Sbjct: 367 NPYRVEDITCQSCKQTRCSCPVKLRHVDPKRPHRQDLCGRCKGKR 411
>O14994:SYN3_HUMAN Synapsin-3 - Homo sapiens (Human)| Length = 580 Score = 35.0 bits (79), Expect = 0.42 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Frame = +1 Query: 229 GSRAPD-LRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQA--CRARSPRPE 378 G AP LRPW P ++ SP + A G +L P P PPQ +A+SP+P+ Sbjct: 400 GGTAPSPLRPWAPQIKSAKSPGQ-AQLGPQLGQPQPRPPPQGGPRQAQSPQPQ 451 Score = 32.7 bits (73), Expect = 2.1 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Frame = +1 Query: 262 PAGRAVGSPA--RAAPAGQELLLPAPGRP--------PQACRARSPRPETQALQQASG*G 411 P + GSP+ R +P GQ+ L P G P PQ RA S QA + + Sbjct: 448 PQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLA 507 Query: 412 SKRRPPLADR 441 S+ RPP+ R Sbjct: 508 SQPRPPVQGR 517
>Q8IYR2:SMYD4_HUMAN SET and MYND domain-containing protein 4 - Homo sapiens (Human)| Length = 804 Score = 34.7 bits (78), Expect = 0.55 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = +2 Query: 146 YYFGAKDARPCAGETAADRALRLKANFAARGLRTCVHGVLLVELSGHPHVL--LLQVRNS 319 Y G +RP + + A R A F TC+ + + + G+P L + +R + Sbjct: 91 YSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINIAQTHGYPERLQPKIMLRKA 150 Query: 320 SFLLPGGRLRPAEQDLQGLKRKLSSKLAAED 412 L+ GRL+ A Q + L+R ++ A D Sbjct: 151 ECLVALGRLQEASQTISDLERNFTATPALAD 181
>O95602:RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 - Homo sapiens (Human)| Length = 1717 Score = 33.5 bits (75), Expect = 1.2 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +2 Query: 278 SGHPHVLLLQVRNSSFLLPGGRLRPAEQDLQGLKRKLSSKLAAEDRNGDHHWQIGECIGM 457 S HP+ LL R +FL +++ A + L KL +E+RNG W G + M Sbjct: 1077 SKHPNTLL---RRGAFLSYSQKIQEAVKAL---------KLESENRNGRRPWDSGRMLRM 1124 Query: 458 WWRSEFDAR 484 W+ + ++R Sbjct: 1125 WYELDEESR 1133
>Q791T5:MTCH1_MOUSE Mitochondrial carrier homolog 1 - Mus musculus (Mouse)| Length = 389 Score = 32.3 bits (72), Expect = 2.7 Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 10/62 (16%) Frame = +1 Query: 229 GSRAPDLRPWRP------AGRAVGSPAR-AAPAGQELLLPAPGR-PPQACRA--RSPRPE 378 G+ P++ PW P AG G+ AR APAG E A R PP A RA R PRP Sbjct: 2 GASDPEVAPWAPGGAAGMAGAGAGAGARGGAPAGVE----ARARDPPPAHRAHPRHPRPA 57 Query: 379 TQ 384 Q Sbjct: 58 AQ 59
>Q9H5J0:ZBTB3_HUMAN Zinc finger and BTB domain-containing protein 3 - Homo sapiens| (Human) Length = 574 Score = 32.0 bits (71), Expect = 3.5 Identities = 44/185 (23%), Positives = 68/185 (36%), Gaps = 8/185 (4%) Frame = +1 Query: 214 QGQLRGSRAPDLRPWRPAGRAVGSPARAAPAGQELLLP---APGRPPQACRARSPRPETQ 384 +G+ +GS AP P + S A G E+ P AP P SP T+ Sbjct: 218 KGEWKGSAAPSPTVRPPDEPPMSSGADTTQPGMEVDAPHLRAPHPPVADVSLASPSSSTE 277 Query: 385 ALQQ---ASG*GSKRRPPLADRRVHWHVVEIRIRCQAISISASKHTC--IQGMRKAVLGQ 549 + +SG + PL + + +++ + K +QG Sbjct: 278 TIPTNYFSSGISAVSLEPLPS---------LDVGPESLRVVEPKDPGGPLQGFYPPASAP 328 Query: 550 VAHGSPVRGAEEPQAPSRAPVPDSRQCSGVWANHICNSESALQVLLQRCKGLRRCFVSGG 729 + +PV PS+AP P + V I S+ V ++ +G R F SGG Sbjct: 329 TSAPAPVSAP----VPSQAPAPAEAELVQVKVEAIVISDEETDVSDEQPQGPERAFPSGG 384 Query: 730 FVQGA 744 V GA Sbjct: 385 AVYGA 389
>Q6P1N0:C2D1A_HUMAN Coiled-coil and C2 domain-containing protein 1A - Homo sapiens| (Human) Length = 951 Score = 32.0 bits (71), Expect = 3.5 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 16/122 (13%) Frame = +1 Query: 301 PAGQELLLPAPGRP-PQACRARSPR-----PETQALQQASG*GSKRRPP----------L 432 PA PAP +P P+ A PR P A + G + PP L Sbjct: 201 PASTPTYSPAPTQPAPRIASAPEPRVTLEGPSATAPASSPGLAKPQMPPGPCSPGPLAQL 260 Query: 433 ADRRVHWHVVEIRIRCQAISISASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQAPSRAPV 612 R+ + + + + Q + +A++H + AVL ++ G PV + P P + P Sbjct: 261 QSRQRDYKLAALHAKQQGDTTAAARHFRVAKSFDAVLEALSRGEPVDLSCLPPPPDQLP- 319 Query: 613 PD 618 PD Sbjct: 320 PD 321
>P52506:UNG_PRVIF Uracil-DNA glycosylase - Pseudorabies virus (strain| Indiana-Funkhauser / Becker) (PRV) Length = 315 Score = 31.6 bits (70), Expect = 4.6 Identities = 18/47 (38%), Positives = 20/47 (42%) Frame = +1 Query: 265 AGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG 405 A A + A AAPAG P RPP A R P A A+G Sbjct: 28 ASNAATAAAAAAPAGAGAGASKPARPPAAARPAKGTPAASAATTATG 74
>Q62910:SYNJ1_RAT Synaptojanin-1 - Rattus norvegicus (Rat)| Length = 1574 Score = 31.6 bits (70), Expect = 4.6 Identities = 34/122 (27%), Positives = 43/122 (35%) Frame = +1 Query: 262 PAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPPLADR 441 P R V PAR AP P RPP ARSP P A ++ G G+ P + R Sbjct: 1106 PPPRPVAPPARPAP---------PQRPPPPSGARSPAP---ARKEFGGVGAPPSPGVTRR 1153 Query: 442 RVHWHVVEIRIRCQAISISASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQAPSRAPVPDS 621 + +A K + G G GA P P+RA V + Sbjct: 1154 ---------EMEAPKSPGTARKDNIGRNQPSPQAGLAGPGPSGYGAARPTIPARAGVISA 1204 Query: 622 RQ 627 Q Sbjct: 1205 PQ 1206
>P10569:MYSC_ACACA Myosin IC heavy chain - Acanthamoeba castellanii (Amoeba)| Length = 1168 Score = 31.6 bits (70), Expect = 4.6 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 262 PAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRP 375 P GR + +P AAP G+ P G PP R +P P Sbjct: 1095 PGGRGMPAPGGAAPRGRGAPPPGAGGPPGGGRGGAPPP 1132
>P53410:ISL2_CHICK Insulin gene enhancer protein ISL-2 - Gallus gallus (Chicken)| Length = 319 Score = 31.6 bits (70), Expect = 4.6 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +1 Query: 262 PAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPPLADR 441 P G A P AP L P PGRPP PRP++ + + ++ R L ++ Sbjct: 110 PDGAAARGPRSPAPPPAHLAEPVPGRPP------GPRPQSHKAAEKT---TRVRTVLNEK 160 Query: 442 RVH 450 ++H Sbjct: 161 QLH 163
>P73374:Y1967_SYNY3 Uncharacterized RNA methyltransferase sll1967 - Synechocystis sp.| (strain PCC 6803) Length = 463 Score = 31.2 bits (69), Expect = 6.0 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +1 Query: 481 QAISISASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQAPSRAPVPD 618 QAI+I ++ + QG R A + Q+A+ + G E P+ + +PD Sbjct: 340 QAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEIPD 385
>P52507:UNG_PRVKA Uracil-DNA glycosylase - Pseudorabies virus (strain Kaplan) (PRV)| Length = 316 Score = 31.2 bits (69), Expect = 6.0 Identities = 19/55 (34%), Positives = 22/55 (40%) Frame = +1 Query: 265 AGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPP 429 A A + A AAPAG P RP A R P A A+G + PP Sbjct: 29 ASNAATAAAAAAPAGAGAGASKPARPSAAARPAKGTPAASAATTATGADASAPPP 83
>P10220:TEGU_HHV11 Large tegument protein - Human herpesvirus 1 (strain 17) (HHV-1)| (Human herpes simplex virus 1) Length = 3164 Score = 31.2 bits (69), Expect = 6.0 Identities = 38/127 (29%), Positives = 46/127 (36%), Gaps = 1/127 (0%) Frame = +1 Query: 238 APDLRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQA-LQQASG*GS 414 A + RP PA PA P LP+P P A +PRP + AS GS Sbjct: 2623 AREARPGVPAEST--RPAPVGPRDDFRRLPSPQSSPAPPDATAPRPPASSRASAASSSGS 2680 Query: 415 KRRPPLADRRVHWHVVEIRIRCQAISISASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQA 594 + R R R A + AS T QG R L +PV P A Sbjct: 2681 RARR------------HRRARSLARATQASATT--QGWRPPALPDTV--APVTDFARPPA 2724 Query: 595 PSRAPVP 615 P + P P Sbjct: 2725 PPKPPEP 2731
>Q16849:PTPRN_HUMAN Receptor-type tyrosine-protein phosphatase-like N precursor - Homo| sapiens (Human) Length = 979 Score = 31.2 bits (69), Expect = 6.0 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +1 Query: 235 RAPDLRPW--RPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRP 375 R P LRP RP R+ +P R PAG+ LL P A + R P+P Sbjct: 112 RIPRLRPPEPRPRDRSGLAPKRPGPAGELLLQDIPTGSAPAAQHRLPQP 160
>P08392:ICP4_HHV11 Trans-acting transcriptional protein ICP4 - Human herpesvirus 1| (strain 17) (HHV-1) (Human herpes simplex virus 1) Length = 1298 Score = 31.2 bits (69), Expect = 6.0 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +1 Query: 271 RAVG-SPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRR 423 RAVG P+ AAPA P PG PP + A PR + ++G +RR Sbjct: 218 RAVGRGPSSAAPAAPGRTPPPPGPPPLSEAAPKPRAAARTPAASAGRIERRR 269
>Q86UW7:CAPS2_HUMAN Calcium-dependent secretion activator 2 - Homo sapiens (Human)| Length = 1296 Score = 31.2 bits (69), Expect = 6.0 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Frame = +1 Query: 274 AVGSPARAAPAG-QELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRPPLADRRVH 450 A GS RA PA +E APGR ARS P L + ++ +RR+ Sbjct: 25 AAGSSQRAPPAPTREGRRDAPGRAGGGGAARSVSPSPSVLSEGRDEPQRQLDDEQERRIR 84 Query: 451 WHVVEIRIRCQAISISASKHT 513 + +RC A +A + T Sbjct: 85 LQLYVFVVRCIAYPFNAKQPT 105
>Q9BYE2:TMPSD_HUMAN Transmembrane protease, serine 13 - Homo sapiens (Human)| Length = 581 Score = 30.8 bits (68), Expect = 7.9 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = +1 Query: 262 PAGRAVGSPARAAPAGQELLLPAPGR--PPQACRARSPRPETQALQQASG*GSKRR 423 P GRA SPA+A+PAG +PGR P QA AR+ + +SG S R Sbjct: 50 PPGRA--SPAQASPAGTPPGRASPGRASPAQASPARASPALASLSRSSSGRSSSAR 103
>Q73VV4:IF2_MYCPA Translation initiation factor IF-2 - Mycobacterium paratuberculosis| Length = 925 Score = 30.8 bits (68), Expect = 7.9 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +1 Query: 262 PAGRAVG-SPARAAPAGQELLLPAPGRPPQACRARSPRP 375 PA +A +PAR PA PAPG+P + PRP Sbjct: 118 PAAQATPEAPARPGPAAARPSAPAPGQPKPPAPGQPPRP 156
>Q8WXD9:CSKI1_HUMAN Caskin-1 - Homo sapiens (Human)| Length = 1431 Score = 30.8 bits (68), Expect = 7.9 Identities = 33/122 (27%), Positives = 46/122 (37%), Gaps = 3/122 (2%) Frame = +1 Query: 259 RPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPR---PETQALQQASG*GSKRRPP 429 RPA G P P P P PP A P PE +A + A +PP Sbjct: 1180 RPASEQAGPPELPPP-------PPPAEPPPTDLAHLPPLPPPEGEARKPA-------KPP 1225 Query: 430 LADRRVHWHVVEIRIRCQAISISASKHTCIQGMRKAVLGQVAHGSPVRGAEEPQAPSRAP 609 ++ + V V + Q SK + G + + AHG+P + +P P AP Sbjct: 1226 VSPKPVLTQPVP---KLQGSPTPTSKKVPLPGPGSPEVKR-AHGTPPPVSPKPPPPPTAP 1281 Query: 610 VP 615 P Sbjct: 1282 KP 1283
>P27884:CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A -| Oryctolagus cuniculus (Rabbit) Length = 2424 Score = 30.8 bits (68), Expect = 7.9 Identities = 21/56 (37%), Positives = 29/56 (51%) Frame = +1 Query: 229 GSRAPDLRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQ 396 G R P + G +V A PAG + LLP P R QA RAR P+ +++Q+ Sbjct: 2309 GPREPLAQDSPGRGPSVCLARAARPAGPQRLLPGP-RTGQAPRARLPQKPARSVQR 2363
>P18090:ADRB1_RAT Beta-1 adrenergic receptor - Rattus norvegicus (Rat)| Length = 466 Score = 30.8 bits (68), Expect = 7.9 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = +1 Query: 247 LRPWRPAGRAVGSPARAAPAGQELLLPAPGRPPQACRARSPRPETQALQQASG*GSKRRP 426 LR +R A + V + + + L P RPP + SP P A A+G SKRRP Sbjct: 245 LRVFREAQKQV----KKIDSCERRFLTGPPRPPSPAPSPSPGPPRPADSLANGRSSKRRP 300 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 165,267,930 Number of extensions: 3977776 Number of successful extensions: 12972 Number of sequences better than 10.0: 30 Number of HSP's gapped: 12893 Number of HSP's successfully gapped: 31 Length of query: 304 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 191 Effective length of database: 69,691,104 Effective search space: 13311000864 Effective search space used: 13311000864 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
