ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf106f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q5BIW4:ALS2_PANTR Alsin - Pan troglodytes (Chimpanzee) 34 1.2
2Q96Q42:ALS2_HUMAN Alsin - Homo sapiens (Human) 34 1.2
3Q62240:JAD1D_MOUSE Histone demethylase JARID1D - Mus musculus (M... 33 2.0
4Q9ZV53:ATL2C_ARATH Putative RING-H2 finger protein ATL2C - Arabi... 33 3.5
5P51175:PPOX_MOUSE Protoporphyrinogen oxidase - Mus musculus (Mouse) 32 5.9
6Q07175:VKGC_BOVIN Vitamin K-dependent gamma-carboxylase - Bos ta... 32 7.7

>Q5BIW4:ALS2_PANTR Alsin - Pan troglodytes (Chimpanzee)|
          Length = 1657
 Score = 34.3 bits (77), Expect = 1.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 779 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKASTPASQETE 645
           ++L+  T  + H   + SH CP G +L   +AE  AST  S  TE
Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHASTALSPSTE 281



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>Q96Q42:ALS2_HUMAN Alsin - Homo sapiens (Human)|
          Length = 1657

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 779 RILLVQTSLQCHTSQNRSHACPCGCSLYGLKAEGKASTPASQETE 645
           ++L+  T  + H   + SH CP G +L   +AE  AST  S  TE
Sbjct: 237 QLLITMTDKEDHVIISDSHCCPLGVTLTESQAENHASTALSPSTE 281



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>Q62240:JAD1D_MOUSE Histone demethylase JARID1D - Mus musculus (Mouse)|
          Length = 1548

 Score = 33.5 bits (75), Expect = 2.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 475 TQPVNSYYCY-----SHEDKFMLLPACSDSYHLYSSFLPEDHV 588
           TQ +NSY C         DKF+L   CSD+YH++    P   V
Sbjct: 318 TQFMNSYVCRICSRGDEVDKFLLCDGCSDNYHIFCLLPPLSEV 360



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>Q9ZV53:ATL2C_ARATH Putative RING-H2 finger protein ATL2C - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 423

 Score = 32.7 bits (73), Expect = 3.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 502 YSHEDKFMLLPACSDSYHL--YSSFLPEDHVTLFCKRYLIFSVKKHTNLSS 648
           +  EDK  LLP CS ++H+    ++L        C+  L+     H NLSS
Sbjct: 133 FETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHNLSS 183



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>P51175:PPOX_MOUSE Protoporphyrinogen oxidase - Mus musculus (Mouse)|
          Length = 477

 Score = 32.0 bits (71), Expect = 5.9
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -3

Query: 986 GCHRRRPSRFLAAKGLLYPLPPCAATSIRGWLRPSP 879
           G H    +RFL   G L+PLP    + +RG LRPSP
Sbjct: 89  GDHPAAQNRFLYVGGTLHPLP----SGLRGLLRPSP 120



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>Q07175:VKGC_BOVIN Vitamin K-dependent gamma-carboxylase - Bos taurus (Bovine)|
          Length = 758

 Score = 31.6 bits (70), Expect = 7.7
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = -2

Query: 909 FHSRLAAAQPRKSYILRLCLSMALISSSDKAFGRVRPNLLNIASNFAGSNLPSVSYVSES 730
           FH RL     RK +I R    M  IS  + AFG  RP+L  +A     +NL       E 
Sbjct: 677 FHERLVRFLLRKLFIFRRSFLMTCISLRNLAFG--RPSLEQLAQEVTYANLRPFEPAGEP 734

Query: 729 LP 724
            P
Sbjct: 735 SP 736


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 227,401,358
Number of extensions: 5220962
Number of successful extensions: 15754
Number of sequences better than 10.0: 6
Number of HSP's gapped: 15745
Number of HSP's successfully gapped: 6
Length of query: 437
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 321
Effective length of database: 68,868,219
Effective search space: 22106698299
Effective search space used: 22106698299
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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