ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf114j19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001059169.1| Oryza sativa (japonica cultivar-group) Os04g0388900 (Os04g0388900) mRNA, complete cds Length = 548 Score = 287 bits (145), Expect = 2e-74 Identities = 251/287 (87%), Gaps = 12/287 (4%) Strand = Plus / Plus Query: 49 cgagagagatgagca---gcggcggcgcggacaagtccggcagcggcggcggaggtgctg 105 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct: 48 cgagagagatgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggc-- 105 Query: 106 gtgggccggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcg 165 ||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 106 -------ggtgaagacgccctcggacttcctcaagtcgatcaggggacgccccgtcgtcg 158 Query: 166 ttaaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatga 225 | || |||||||| ||||||||||||||||||||| ||||||||||||| || ||||||| Sbjct: 159 tcaagctcaactccggcgtcgactaccgaggtattttggcttgcctggatgggtatatga 218 Query: 226 acattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtg 285 ||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| ||||||| Sbjct: 219 acattgcaatggagcaaacggaagagtatgtgaatggccaactcaagaacaagtatggtg 278 Query: 286 acgctttcataagaggcaacaacgtcctctacatcagcacgtcgaag 332 | || ||||||||||||||||| || || ||||||||||| |||||| Sbjct: 279 atgccttcataagaggcaacaatgttctatacatcagcacttcgaag 325
>dbj|AK063224.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E09, full insert sequence Length = 548 Score = 287 bits (145), Expect = 2e-74 Identities = 251/287 (87%), Gaps = 12/287 (4%) Strand = Plus / Plus Query: 49 cgagagagatgagca---gcggcggcgcggacaagtccggcagcggcggcggaggtgctg 105 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct: 48 cgagagagatgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggc-- 105 Query: 106 gtgggccggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcg 165 ||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 106 -------ggtgaagacgccctcggacttcctcaagtcgatcaggggacgccccgtcgtcg 158 Query: 166 ttaaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatga 225 | || |||||||| ||||||||||||||||||||| ||||||||||||| || ||||||| Sbjct: 159 tcaagctcaactccggcgtcgactaccgaggtattttggcttgcctggatgggtatatga 218 Query: 226 acattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtg 285 ||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| ||||||| Sbjct: 219 acattgcaatggagcaaacggaagagtatgtgaatggccaactcaagaacaagtatggtg 278 Query: 286 acgctttcataagaggcaacaacgtcctctacatcagcacgtcgaag 332 | || ||||||||||||||||| || || ||||||||||| |||||| Sbjct: 279 atgccttcataagaggcaacaatgttctatacatcagcacttcgaag 325
>gb|DQ244883.1| Zea mays clone 11507 mRNA sequence Length = 680 Score = 240 bits (121), Expect = 5e-60 Identities = 202/229 (88%) Strand = Plus / Plus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || | Sbjct: 91 cggtgaagacgccgtcggacttcctcaagtccatcaggggccgccccgtagtcgtaaagc 150 Query: 172 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 231 ||||||| |||||||||||| ||||||| ||||||| ||||| |||||||||||||| | Sbjct: 151 tcaactccggcgtcgactacagaggtatattggcttgtctggatggttatatgaacatcg 210 Query: 232 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 291 | |||||||| ||||| ||||||||||| ||||| |||||||||| ||||| ||||| | Sbjct: 211 caatggagcagaccgaggagtacgtgaatggccagttgaagaacaagtatggcgacgcct 270 Query: 292 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccct 340 ||||||| ||||||||||| || |||||||||||| |||||||| |||| Sbjct: 271 tcataaggggcaacaacgttctgtacatcagcacgacgaagcggaccct 319 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 52 gagagatgagcagcggcggcgcggacaagtccggcagcggcggcgg 97 ||||||||||| |||||||||||||||| ||||||| |||||||| Sbjct: 43 gagagatgagctccggcggcgcggacaagcccggcagtggcggcgg 88
>ref|NM_001053465.1| Oryza sativa (japonica cultivar-group) Os02g0510100 (Os02g0510100) mRNA, partial cds Length = 474 Score = 190 bits (96), Expect = 4e-45 Identities = 198/232 (85%) Strand = Plus / Plus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 47 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 106 Query: 172 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 231 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 107 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 166 Query: 232 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 291 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 167 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 226 Query: 292 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 343 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 227 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 278
>dbj|AK122107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126F06, full insert sequence Length = 474 Score = 190 bits (96), Expect = 4e-45 Identities = 198/232 (85%) Strand = Plus / Plus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 47 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 106 Query: 172 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 231 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 107 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 166 Query: 232 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 291 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 167 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 226 Query: 292 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 343 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 227 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 278
>dbj|AK058487.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D10, full insert sequence Length = 627 Score = 190 bits (96), Expect = 4e-45 Identities = 198/232 (85%) Strand = Plus / Plus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 106 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 165 Query: 172 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 231 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 166 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 225 Query: 232 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 291 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 226 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 285 Query: 292 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 343 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 286 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 337
>emb|CT828157.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI010E04, full insert sequence Length = 599 Score = 182 bits (92), Expect = 1e-42 Identities = 197/232 (84%) Strand = Plus / Plus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| ||||| ||||| |||||||| ||||| |||||||| |||||||||||||| || | Sbjct: 74 cggtgaagacaccgtccgacttccttaagtccatcagggggcgccccgtcgtcgtcaagc 133 Query: 172 tcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacattg 231 ||||||| |||||||||||||| |||||| ||||||| || || ||||| |||||||||| Sbjct: 134 tcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacattg 193 Query: 232 cgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctt 291 | ||||||||||| ||||| || || || || || ||||||||||| || |||||||||| Sbjct: 194 caatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgctt 253 Query: 292 tcataagaggcaacaacgtcctctacatcagcacgtcgaagcggcccctcac 343 ||||| |||| ||||| || | ||||||||||| || ||||| ||||||| Sbjct: 254 tcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcac 305
>emb|CR855099.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0096P03, complete sequence Length = 88065 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 194 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 253 ||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 31174 aggtattttggcttgcctggatgggtatatgaacattgcaatggagcaaacggaagagta 31115 Query: 254 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 307 ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 31114 tgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggcaacaa 31061 Score = 139 bits (70), Expect = 1e-29 Identities = 131/152 (86%), Gaps = 12/152 (7%) Strand = Plus / Minus Query: 49 cgagagagatgagca---gcggcggcgcggacaagtccggcagcggcggcggaggtgctg 105 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct: 35842 cgagagagatgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggc-- 35785 Query: 106 gtgggccggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcg 165 ||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 35784 -------ggtgaagacgccctcggacttcctcaagtcgatcaggggacgccccgtcgtcg 35732 Query: 166 ttaaactcaactcgggcgtcgactaccgaggt 197 | || |||||||| |||||||||||||||||| Sbjct: 35731 tcaagctcaactccggcgtcgactaccgaggt 35700
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 194 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 253 ||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 19145723 aggtattttggcttgcctggatgggtatatgaacattgcaatggagcaaacggaagagta 19145664 Query: 254 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 307 ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 19145663 tgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggcaacaa 19145610 Score = 139 bits (70), Expect = 1e-29 Identities = 131/152 (86%), Gaps = 12/152 (7%) Strand = Plus / Minus Query: 49 cgagagagatgagca---gcggcggcgcggacaagtccggcagcggcggcggaggtgctg 105 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct: 19150391 cgagagagatgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggc-- 19150334 Query: 106 gtgggccggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcg 165 ||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 19150333 -------ggtgaagacgccctcggacttcctcaagtcgatcaggggacgccccgtcgtcg 19150281 Query: 166 ttaaactcaactcgggcgtcgactaccgaggt 197 | || |||||||| |||||||||||||||||| Sbjct: 19150280 tcaagctcaactccggcgtcgactaccgaggt 19150249 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 11867429 cggcagcggcggcggaggtg 11867410 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctggtggg 110 |||| ||||||||||||||| ||||||| Sbjct: 30167554 cggcggcggcggcggaggtggtggtggg 30167581
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 194 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 253 ||||||| ||||||||||||| || |||||||||||||| ||||||||||| |||||||| Sbjct: 79243 aggtattttggcttgcctggatgggtatatgaacattgcaatggagcaaacggaagagta 79184 Query: 254 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 307 ||||| |||||||| |||||||| |||||||| || ||||||||||||||||| Sbjct: 79183 tgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggcaacaa 79130 Score = 139 bits (70), Expect = 1e-29 Identities = 131/152 (86%), Gaps = 12/152 (7%) Strand = Plus / Minus Query: 49 cgagagagatgagca---gcggcggcgcggacaagtccggcagcggcggcggaggtgctg 105 ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct: 83911 cgagagagatgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggc-- 83854 Query: 106 gtgggccggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcg 165 ||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct: 83853 -------ggtgaagacgccctcggacttcctcaagtcgatcaggggacgccccgtcgtcg 83801 Query: 166 ttaaactcaactcgggcgtcgactaccgaggt 197 | || |||||||| |||||||||||||||||| Sbjct: 83800 tcaagctcaactccggcgtcgactaccgaggt 83769
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 18335458 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 18335399 Query: 172 tcaactcgggcgtcgactaccgaggta 198 ||||||| |||||||||||||| |||| Sbjct: 18335398 tcaactccggcgtcgactaccgcggta 18335372 Score = 91.7 bits (46), Expect = 3e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 194 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 253 ||||||| ||||||| || || ||||| ||||||||||| ||||||||||| ||||| || Sbjct: 18331791 aggtattttggcttgtcttgatggttacatgaacattgcaatggagcaaacggaagaata 18331732 Query: 254 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 307 || || || || ||||||||||| || ||||||||||||||| |||| ||||| Sbjct: 18331731 tgtcaatggtcagctgaagaacaagtacggtgacgctttcatacgaggaaacaa 18331678 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctgg 106 ||||||||||||||| |||||||| Sbjct: 4423365 cggcagcggcggcggcggtgctgg 4423388
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 101 bits (51), Expect = 3e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 112 cggtcaagacgccgtcagacttcctcaagtcgatcaggggccgccccgtcgtcgttaaac 171 |||| |||||||| || |||||||||||||| |||||||| |||||||||||||| || | Sbjct: 136671 cggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaagc 136612 Query: 172 tcaactcgggcgtcgactaccgaggta 198 ||||||| |||||||||||||| |||| Sbjct: 136611 tcaactccggcgtcgactaccgcggta 136585 Score = 91.7 bits (46), Expect = 3e-15 Identities = 97/114 (85%) Strand = Plus / Minus Query: 194 aggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagta 253 ||||||| ||||||| || || ||||| ||||||||||| ||||||||||| ||||| || Sbjct: 133004 aggtattttggcttgtcttgatggttacatgaacattgcaatggagcaaacggaagaata 132945 Query: 254 cgtgaacggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 307 || || || || ||||||||||| || ||||||||||||||| |||| ||||| Sbjct: 132944 tgtcaatggtcagctgaagaacaagtacggtgacgctttcatacgaggaaacaa 132891
>dbj|AK227857.1| Arabidopsis thaliana mRNA for putative small nuclear ribonucleoprotein polypeptide F, complete cds, clone: RAFL14-42-M15 Length = 791 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 229 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 288 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 325 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 289 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 335
>ref|NM_129943.2| Arabidopsis thaliana unknown protein (AT2G43810) mRNA, complete cds Length = 781 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 229 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 288 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 325 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 289 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 335
>gb|BT008305.1| Arabidopsis thaliana At2g43810 gene, complete cds Length = 276 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 139 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 198 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 325 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 199 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 245
>emb|BX821421.1|CNS0A8BJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZC05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 662 Score = 85.7 bits (43), Expect = 2e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 215 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 274 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcagcac 325 ||||| |||||||| | | |||||||| || || ||||||||||| Sbjct: 275 tatggcgacgcttttgtccgtggcaacaatgttctttacatcagcac 321
>gb|AC002333.3| Arabidopsis thaliana chromosome 2 clone F18O19 map CIC10F02, complete sequence Length = 98734 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||||||||||||||| || || ||||| |||||||||| | Sbjct: 23235 tatatgaacatcgcaatggagcaaaccgaagagtatgtaaatggccagctgaagaacaca 23176 Query: 279 tatggtgacgcttt 292 ||||| |||||||| Sbjct: 23175 tatggcgacgcttt 23162
>gb|AY433311.1| Aedes aegypti ASAP ID: 34253 small nuclear ribonucleoprotein mRNA sequence Length = 429 Score = 75.8 bits (38), Expect = 2e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 202 tggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaacg 261 |||||||||| || || || |||||||| || |||| || || || |||||||| |||| Sbjct: 206 tggcttgcctcgatggctacatgaacatcgccctggatcagacggaggagtacgttaacg 265 Query: 262 gccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacat 319 | || ||||||||||||||||| ||||| ||||| ||||||||||||| || ||||| Sbjct: 266 gtcagctgaagaacaaatatggcgacgcgttcattcgaggcaacaacgtgctgtacat 323
>gb|BC078551.1| Xenopus laevis MGC85411 protein, mRNA (cDNA clone MGC:85411 IMAGE:6933188), complete cds Length = 612 Score = 73.8 bits (37), Expect = 7e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 171 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 230 |||||||| || ||||| || |||||| ||||||| || | || ||||||||||| ||| Sbjct: 177 ctcaactctggagtcgattatcgaggtgttctggcatgtttagatggttatatgaatatt 236 Query: 231 gcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 283 || |||| ||||| |||||||| ||||| || || ||||||||||||||||| Sbjct: 237 gctttggaacaaactgaagagtatgtgaatggacagctgaagaacaaatatgg 289
>gb|AY314955.1| Herdmania curvata clone 712 Sm protein-like mRNA, partial sequence Length = 730 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| || || ||||| ||||||||||| |||| ||||| |||||||| || || Sbjct: 99 ctggcttgtctcgatggttacatgaacattgccctggaacaaacagaagagtatgtcaat 158 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaa 307 || ||| |||| ||||||||||| || |||||||| ||||| ||||| Sbjct: 159 ggacaattgaaaaacaaatatggcgatgctttcatcagagggaacaa 205
>gb|AC135160.22| Medicago truncatula clone mth2-20m5, complete sequence Length = 120202 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 |||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||||| Sbjct: 33718 tatatgaatattgcaatggaacaaacagaagagtacgttaatggacagctgaagaacaag 33659 Query: 279 tatggtgacgctttcat 295 |||||||| || ||||| Sbjct: 33658 tatggtgatgcattcat 33642
>gb|AC137667.18| Medicago truncatula clone mth2-30h5, complete sequence Length = 111249 Score = 65.9 bits (33), Expect = 2e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 |||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||||| Sbjct: 90293 tatatgaatattgcaatggaacaaacagaagagtacgttaatggacagctgaagaacaag 90352 Query: 279 tatggtgacgctttcat 295 |||||||| || ||||| Sbjct: 90353 tatggtgatgcattcat 90369
>gb|AY231994.1| Drosophila yakuba clone yak-ad_CG9344 mRNA sequence Length = 237 Score = 65.9 bits (33), Expect = 2e-07 Identities = 116/141 (82%), Gaps = 2/141 (1%) Strand = Plus / Plus Query: 180 ggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacat-tgcgatgga 238 ||||| |||||||||||| | ||||| || ||||| || || |||||||| ||| |||| Sbjct: 76 ggcgtggactaccgaggtgtgctggcctgtctggatggctacatgaacatctgcc-tgga 134 Query: 239 gcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttcataag 298 ||| || || ||||||||||| || || ||||||||||| || || ||||| || || | Sbjct: 135 gcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgcctttatccg 194 Query: 299 aggcaacaacgtcctctacat 319 |||||||||||||||||||| Sbjct: 195 cggcaacaacgtcctctacat 215
>emb|CR719116.2|CNS0GHTE Tetraodon nigroviridis full-length cDNA Length = 461 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 180 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 239 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 240 ggccagctcaagaacaagtatggcgatgcttttctgagaggaaacaatgttctctacatc 299 Query: 321 agcac 325 ||||| Sbjct: 300 agcac 304
>emb|CR715593.2|CNS0GF3P Tetraodon nigroviridis full-length cDNA Length = 453 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 172 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 231 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 232 ggccagctcaagaacaagtatggcgatgcttttctgagaggaaacaatgttctctacatc 291 Query: 321 agcac 325 ||||| Sbjct: 292 agcac 296
>emb|CR713592.2|CNS0GDK4 Tetraodon nigroviridis full-length cDNA Length = 421 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 136 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 195 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 196 ggccagctcaagaacaagtatggggatgcttttctgagaggaaacaatgttctctacatc 255 Query: 321 agcac 325 ||||| Sbjct: 256 agcac 260
>emb|CR712519.2|CNS0GCQB Tetraodon nigroviridis full-length cDNA Length = 421 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 136 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 195 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 196 ggccagctcaagaacaagtatggggatgcttttctgagaggaaacaatgttctctacatc 255 Query: 321 agcac 325 ||||| Sbjct: 256 agcac 260
>emb|CR706927.2|CNS0G8EZ Tetraodon nigroviridis full-length cDNA Length = 424 Score = 65.9 bits (33), Expect = 2e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 139 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 198 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | ||||| ||||| || ||||||||| Sbjct: 199 ggccagctcaagaacaagtatggggatgcttttctgagaggaaacaatgttctctacatc 258 Query: 321 agcac 325 ||||| Sbjct: 259 agcac 263
>ref|NM_115843.2| Arabidopsis thaliana unknown protein (AT3G59810) mRNA, complete cds Length = 625 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 246 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 305 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 306 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 349
>ref|NM_058482.2| Caenorhabditis elegans LSM Sm-like protein family member (lsm-6) (lsm-6) mRNA, complete cds Length = 288 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 171 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 230 |||||||| |||||||||||||| || ||||| || || || ||||| ||||||||||| Sbjct: 81 ctcaactctggcgtcgactaccgtggcattctcgcatgtctcgacggatatatgaacatc 140 Query: 231 gcgatggagcaaaccgaaga 250 ||| | || ||||||||||| Sbjct: 141 gcgctcgaacaaaccgaaga 160
>gb|AY086430.1| Arabidopsis thaliana clone 25079 mRNA, complete sequence Length = 597 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 246 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 305 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 306 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 349
>gb|BT004433.1| Arabidopsis thaliana clone U20298 putative U6 snRNA-associated Sm protein (At3g59810) mRNA, complete cds Length = 307 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 139 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 198 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 199 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 242
>gb|BT002850.1| Arabidopsis thaliana clone RAFL14-80-I08 (R20298) putative U6 snRNA-associated Sm protein (At3g59810) mRNA, complete cds Length = 629 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 233 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 292 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 293 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 336
>emb|BX825935.1|CNS0A591 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL74ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 556 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 211 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 270 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 271 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 314
>emb|BX825807.1|CNS0A528 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL64ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 514 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 167 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 226 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||||||||| || || | || |||||||| || |||||||| Sbjct: 227 tatggtgacgcctttatccgtggaaacaacgttctttacatcag 270
>emb|AL138647.1|ATF24G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F24G16 Length = 100906 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 ||||||||||| || |||||||| || || ||||| || ||||| || || ||||||||| Sbjct: 30274 tatatgaacatagcaatggagcagacggaggagtatgtaaacgggcagctcaagaacaaa 30333 Query: 279 tatggtgacgc 289 ||||||||||| Sbjct: 30334 tatggtgacgc 30344
>emb|AJ292366.1|EMU292366 Echinococcus multilocularis mRNA for putative U6-snRNA-associated protein (smlp gene) Length = 358 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 235 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgcttt 292 ||||||| || ||||||||||| | || |||||||||||||||||||||||| |||| Sbjct: 174 tggagcagacagaagagtacgtcgagggtcaactgaagaacaaatatggtgacacttt 231
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 235 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 294 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 16864861 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 16864920 Query: 295 taagaggcaacaacgtcctctacat 319 | | |||||||| ||||||||||| Sbjct: 16864921 tccgcggcaacaatgtcctctacat 16864945
>gb|AC189297.1| Brassica rapa subsp. pekinensis clone KBrB027O09, complete sequence Length = 149009 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 198 attctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtg 257 ||||| ||||| || || || ||||||||||| || |||||||| || || ||||| || Sbjct: 51805 attcttgcttgtcttgatgggtatatgaacatagcaatggagcagacagaggagtatgtc 51864 Query: 258 aacggccaactgaagaacaaatatggtga 286 |||||||| || ||||||||||| ||||| Sbjct: 51865 aacggccagctcaagaacaaatacggtga 51893
>gb|BC118889.1| Xenopus tropicalis hypothetical protein MGC147213, mRNA (cDNA clone MGC:147213 IMAGE:7826818), complete cds Length = 592 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 171 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 230 |||||||| || ||||| || |||||| ||||||| || | || ||||| ||||| ||| Sbjct: 172 ctcaactctggagtcgattatcgaggtgttctggcatgtttagatggttacatgaatatt 231 Query: 231 gcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 283 || |||| ||||| |||||||| ||||| || || ||||||||||| ||||| Sbjct: 232 gctttggaacaaacagaagagtatgtgaatggacagctgaagaacaagtatgg 284
>ref|NM_137684.1| Drosophila melanogaster CG9344-RA (CG9344), mRNA Length = 471 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 235 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 294 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 230 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 289 Query: 295 taagaggcaacaacgtcctctacat 319 | | |||||||| ||||||||||| Sbjct: 290 tccgcggcaacaatgtcctctacat 314
>emb|CT025429.2| Xenopus tropicalis finished cDNA, clone TGas070i08 Length = 571 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 171 ctcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaacatt 230 |||||||| || ||||| || |||||| ||||||| || | || ||||| ||||| ||| Sbjct: 97 ctcaactctggagtcgattatcgaggtgttctggcatgtttagatggttacatgaatatt 156 Query: 231 gcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 283 || |||| ||||| |||||||| ||||| || || ||||||||||| ||||| Sbjct: 157 gctttggaacaaacagaagagtatgtgaatggacagctgaagaacaagtatgg 209
>gb|AY113474.1| Drosophila melanogaster RE43665 full insert cDNA Length = 490 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 235 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 294 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 230 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 289 Query: 295 taagaggcaacaacgtcctctacat 319 | | |||||||| ||||||||||| Sbjct: 290 tccgcggcaacaatgtcctctacat 314
>emb|CR708819.2|CNS0G9VJ Tetraodon nigroviridis full-length cDNA Length = 395 Score = 58.0 bits (29), Expect = 4e-05 Identities = 101/125 (80%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 110 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 169 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | || || ||||| || ||||||||| Sbjct: 170 ggccagctcaagaacaagtatggcgatgcttttctgaggggaaacaatgttctctacatc 229 Query: 321 agcac 325 ||||| Sbjct: 230 agcac 234
>gb|AC007888.7|AC007888 Drosophila melanogaster, chromosome 2R, region 57B6-57B13, BAC clone BACR10P11, complete sequence Length = 164035 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 235 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 294 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 58785 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 58726 Query: 295 taagaggcaacaacgtcctctacat 319 | | |||||||| ||||||||||| Sbjct: 58725 tccgcggcaacaatgtcctctacat 58701
>gb|AC005268.1|AC005268 Drosophila melanogaster DNA sequence (P1s DS03550 (D225) and DS02397 (D206)), complete sequence Length = 89791 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 235 tggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatggtgacgctttca 294 ||||||| || || ||||||||||| || || ||||||||||| || || ||||| |||| Sbjct: 87246 tggagcagacggaggagtacgtgaatgggcagctgaagaacaagtacggcgacgccttca 87187 Query: 295 taagaggcaacaacgtcctctacat 319 | | |||||||| ||||||||||| Sbjct: 87186 tccgcggcaacaatgtcctctacat 87162
>ref|NM_001002077.1| Danio rerio zgc:92379 (zgc:92379), mRNA gb|BC072549.1| Danio rerio zgc:92379, mRNA (cDNA clone MGC:92379 IMAGE:7036390), complete cds Length = 485 Score = 56.0 bits (28), Expect = 2e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 168 aaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaac 227 ||||| ||||| || ||||| ||| |||| | ||||| ||||| ||||| || ||||| Sbjct: 99 aaactgaactctggtgtcgattacagaggagtcctggcctgccttgacggctacatgaat 158 Query: 228 attgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 283 |||||| |||| || || || || || || |||||||||||||||||||| ||||| Sbjct: 159 attgcggtggaacagacagaggaatatgtcaacggccaactgaagaacaagtatgg 214
>ref|XM_689037.1| PREDICTED: Danio rerio similar to U6 snRNA-associated Sm-like protein LSm6 (LOC573495), mRNA Length = 477 Score = 56.0 bits (28), Expect = 2e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 168 aaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttatatgaac 227 ||||| ||||| || ||||| ||| |||| | ||||| ||||| ||||| || ||||| Sbjct: 118 aaactgaactctggtgtcgattacagaggagtcctggcctgccttgacggctacatgaat 177 Query: 228 attgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatatgg 283 |||||| |||| || || || || || || |||||||||||||||||||| ||||| Sbjct: 178 attgcggtggaacagacagaggaatatgtcaacggccaactgaagaacaagtatgg 233
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1, complete sequence Length = 214471 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 ||||| ||||| ||||| || ||||| |||||| |||| || || || || || || ||| Sbjct: 184334 ctggcctgccttgacggctacatgaatattgcggtggaacagacagaggaatatgtcaac 184393 Query: 261 ggccaactgaagaacaaatatgg 283 ||||||||||||||||| ||||| Sbjct: 184394 ggccaactgaagaacaagtatgg 184416
>emb|CR701911.1|CNS0G4JN Tetraodon nigroviridis full-length cDNA Length = 898 Score = 50.1 bits (25), Expect = 0.010 Identities = 100/125 (80%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 |||||||| |||| ||||| ||||||||||| || || ||||| ||||| || || || Sbjct: 652 ctggcttgtttggatggttacatgaacattgccatcgaacaaactgaagaatatgtaaat 711 Query: 261 ggccaactgaagaacaaatatggtgacgctttcataagaggcaacaacgtcctctacatc 320 ||||| || |||||||| ||||| || ||||| | || || ||||| || ||||||||| Sbjct: 712 ggccagctcaagaacaagtatggggatgcttttctgaggggaaacaatgttctctacatc 771 Query: 321 agcac 325 |||| Sbjct: 772 cgcac 776
>ref|XM_001177002.1| PREDICTED: Strongylocentrotus purpuratus similar to Lsm6 protein (LOC594723), mRNA Length = 839 Score = 48.1 bits (24), Expect = 0.038 Identities = 84/104 (80%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 |||||||||||||| ||||||| || || ||||| || || || || || || |||||| Sbjct: 312 tatatgaacattgccttggagcagacggaggagtatgtcaatggtcagctcaaaaacaaa 371 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||| || |||||||| ||||| || || || || |||||||| Sbjct: 372 tatggagatgctttcatcagaggaaataatgtgctatacatcag 415
>ref|XM_794153.2| PREDICTED: Strongylocentrotus purpuratus similar to Lsm6 protein (LOC594723), mRNA Length = 839 Score = 48.1 bits (24), Expect = 0.038 Identities = 84/104 (80%) Strand = Plus / Plus Query: 219 tatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaa 278 |||||||||||||| ||||||| || || ||||| || || || || || || |||||| Sbjct: 312 tatatgaacattgccttggagcagacggaggagtatgtcaatggtcagctcaaaaacaaa 371 Query: 279 tatggtgacgctttcataagaggcaacaacgtcctctacatcag 322 ||||| || |||||||| ||||| || || || || |||||||| Sbjct: 372 tatggagatgctttcatcagaggaaataatgtgctatacatcag 415
>ref|XM_969082.1| PREDICTED: Tribolium castaneum similar to CG9344-PA (LOC663017), mRNA Length = 240 Score = 48.1 bits (24), Expect = 0.038 Identities = 63/76 (82%) Strand = Plus / Plus Query: 193 gaggtattctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagt 252 ||||| || ||||||| || || || || |||||||| ||| ||||||||||||| || | Sbjct: 89 gaggtgttttggcttgtctcgatggctacatgaacatagcgttggagcaaaccgaggaat 148 Query: 253 acgtgaacggccaact 268 |||| ||||| ||||| Sbjct: 149 acgtcaacggacaact 164
>ref|XM_420431.2| PREDICTED: Gallus gallus LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae), transcript variant 2 (LSM6), mRNA Length = 764 Score = 46.1 bits (23), Expect = 0.15 Identities = 86/107 (80%) Strand = Plus / Plus Query: 183 gtcgactaccgaggtattctggcttgcctggacggttatatgaacattgcgatggagcaa 242 ||||| || |||||| | |||||||||||||| || |||||||| || || |||| || Sbjct: 390 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaatatagctctggaacag 449 Query: 243 accgaagagtacgtgaacggccaactgaagaacaaatatggtgacgc 289 || ||||| ||||| || || ||| | |||||||| ||||| ||||| Sbjct: 450 acagaagaatacgtaaatggacaattaaagaacaagtatggggacgc 496
>ref|XM_001232749.1| PREDICTED: Gallus gallus LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae), transcript variant 1 (LSM6), mRNA Length = 492 Score = 46.1 bits (23), Expect = 0.15 Identities = 86/107 (80%) Strand = Plus / Plus Query: 183 gtcgactaccgaggtattctggcttgcctggacggttatatgaacattgcgatggagcaa 242 ||||| || |||||| | |||||||||||||| || |||||||| || || |||| || Sbjct: 118 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaatatagctctggaacag 177 Query: 243 accgaagagtacgtgaacggccaactgaagaacaaatatggtgacgc 289 || ||||| ||||| || || ||| | |||||||| ||||| ||||| Sbjct: 178 acagaagaatacgtaaatggacaattaaagaacaagtatggggacgc 224
>gb|AC124494.4| Mus musculus BAC clone RP23-464P12 from chromosome 13, complete sequence Length = 204177 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 83 cggcagcggcggcggaggtgctggtgg 109 |||||||||||||||||||| |||||| Sbjct: 54012 cggcagcggcggcggaggtgatggtgg 53986
>gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's Hospital Oakland Research Institute) complete sequence Length = 210385 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Minus Query: 83 cggcagcggcggcggaggtgctggtgg 109 |||||||||||||||||||| |||||| Sbjct: 150983 cggcagcggcggcggaggtggtggtgg 150957
>ref|XM_954642.1| Neurospora crassa OR74A hypothetical protein (NCU05760.1) partial mRNA Length = 699 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctggtgg 109 |||| |||||||||||||||||||||| Sbjct: 546 cggcggcggcggcggaggtgctggtgg 572
>gb|DQ213792.1| Taeniopygia guttata clone 0065P0015B08 LSM6-like U6 small nuclear RNA associated-like mRNA, complete sequence Length = 455 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Plus Query: 192 cgaggtattctggcttgcctggacggttatatgaacat 229 |||||| | |||||||||||||| || ||||||||||| Sbjct: 148 cgaggtgtcctggcttgcctggatggatatatgaacat 185
>gb|AC140433.3| Mus musculus BAC clone RP23-96L16 from chromosome 16, complete sequence Length = 231593 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacacaa 47 |||||||||||||||||||||| Sbjct: 62898 cctcccagtcccacccacacaa 62877
>gb|AC122381.2| Mus musculus BAC clone RP23-477C4 from chromosome 16, complete sequence Length = 188889 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacacaa 47 |||||||||||||||||||||| Sbjct: 160986 cctcccagtcccacccacacaa 160965
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 catcagcacgtcgaagcggcc 337 ||||||||||||||||||||| Sbjct: 2092564 catcagcacgtcgaagcggcc 2092584
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 catcagcacgtcgaagcggcc 337 ||||||||||||||||||||| Sbjct: 2012329 catcagcacgtcgaagcggcc 2012349
>gb|CP000380.1| Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence Length = 1196094 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 catcagcacgtcgaagcggcc 337 ||||||||||||||||||||| Sbjct: 799139 catcagcacgtcgaagcggcc 799119
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 catcagcacgtcgaagcggcc 337 ||||||||||||||||||||| Sbjct: 2233337 catcagcacgtcgaagcggcc 2233357
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 427 tgtggtgaactggtgatctga 447 ||||||||||||||||||||| Sbjct: 36212 tgtggtgaactggtgatctga 36192
>gb|AC128768.4| Rattus norvegicus 1 BAC CH230-445L3 (Children's Hospital Oakland Research Institute) complete sequence Length = 156228 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 463 tcactctcgtacctgctgtctgcta 487 |||||| |||||||||||||||||| Sbjct: 117712 tcactcacgtacctgctgtctgcta 117688
>dbj|AK158587.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K230019E24 product:unclassifiable, full insert sequence Length = 1695 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 23 cagcctcccagtcccacccacacaa 47 ||||||||||||||||||| ||||| Sbjct: 740 cagcctcccagtcccaccctcacaa 764
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ccggcagcggcggcggaggtg 102 ||||||||||||||||||||| Sbjct: 10066120 ccggcagcggcggcggaggtg 10066100 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tccggcagcggcggcggagg 100 |||||||||||||||||||| Sbjct: 17032174 tccggcagcggcggcggagg 17032193 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 gatgagcagcggcggcgcgg 75 |||||||||||||||||||| Sbjct: 19113222 gatgagcagcggcggcgcgg 19113241
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 427 tgtggtgaactggtgatctga 447 ||||||||||||||||||||| Sbjct: 2586192 tgtggtgaactggtgatctga 2586212
>dbj|AP000056.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 27/28, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacaca 46 ||||||||||||||||||||| Sbjct: 12518 cctcccagtcccacccacaca 12498
>emb|X79146.1|SLLINC S.lincolnensis (78-11) Lincomycin production genes Length = 36270 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 gcggcggcgcggacaagtccggcag 88 ||||||||||||||| ||||||||| Sbjct: 24022 gcggcggcgcggacaggtccggcag 24046
>dbj|BS000192.1| Pan troglodytes chromosome 22 clone:PTB-125M11, map 22, complete sequences Length = 189269 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacaca 46 ||||||||||||||||||||| Sbjct: 37015 cctcccagtcccacccacaca 36995
>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete sequence Length = 205757 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 cagcctcccagtcccacccacacaa 47 ||||||||||||||||||| ||||| Sbjct: 62363 cagcctcccagtcccaccctcacaa 62339
>ref|XM_315329.2| Anopheles gambiae str. PEST ENSANGP00000021121 (ENSANGG00000018632), mRNA Length = 380 Score = 42.1 bits (21), Expect = 2.3 Identities = 87/109 (79%) Strand = Plus / Plus Query: 211 tggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactga 270 ||||||| || ||||||||||| |||| || || ||||||||||| || || || |||| Sbjct: 189 tggacggctacatgaacattgccctggaccagacggaagagtacgtaaatgggcagctga 248 Query: 271 agaacaaatatggtgacgctttcataagaggcaacaacgtcctctacat 319 | ||||| || || || || ||||| | |||||||| || |||||||| Sbjct: 249 aaaacaagtacggcgatgcgttcatccgcggcaacaatgtactctacat 297
>ref|XM_310462.2| Anopheles gambiae str. PEST ENSANGP00000007331 (ENSANGG00000005528), partial mRNA Length = 621 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 85 gcagcggcggcggaggtgctggtgg 109 |||||||||||||||||| |||||| Sbjct: 383 gcagcggcggcggaggtggtggtgg 359
>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacaca 46 ||||||||||||||||||||| Sbjct: 294727 cctcccagtcccacccacaca 294707
>dbj|AP000330.3| Homo sapiens genomic DNA, chromosome 21 clone:RP1-140K16, complete sequence Length = 170368 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacaca 46 ||||||||||||||||||||| Sbjct: 40316 cctcccagtcccacccacaca 40296
>gb|AY609906.1| Sus scrofa clone Clu_4190.scr.msk.p1.Contig2, mRNA sequence Length = 753 Score = 42.1 bits (21), Expect = 2.3 Identities = 63/77 (81%) Strand = Plus / Plus Query: 201 ctggcttgcctggacggttatatgaacattgcgatggagcaaaccgaagagtacgtgaac 260 ||||| ||||||||||| || |||||||| || |||| || || || ||||| || ||| Sbjct: 278 ctggcgtgcctggacggctacatgaacatagccttggaacagacggaggagtatgtaaac 337 Query: 261 ggccaactgaagaacaa 277 || || ||||||||||| Sbjct: 338 ggacagctgaagaacaa 354
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ccggcagcggcggcggaggtg 102 ||||||||||||||||||||| Sbjct: 96501 ccggcagcggcggcggaggtg 96521
>emb|Y00661.1|HSBCR Human bcr mRNA (break point cluster gene) Length = 4714 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctggtgggccggt 115 ||||||||||||||| || ||||||||| |||| Sbjct: 219 cggcagcggcggcggcggggctggtggggcggt 251
>dbj|AP000171.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B2344F14-f50E8, segment 7/9, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacaca 46 ||||||||||||||||||||| Sbjct: 4486 cctcccagtcccacccacaca 4466
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 2944673 cggcagcggcggcggaggtg 2944654
>emb|CR855081.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0113C11, complete sequence Length = 80243 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 23943 cggcagcggcggcggaggtg 23924
>ref|XM_001224606.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_06951) mRNA, complete cds Length = 1353 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 ccggcagcggcggcggaggtgctggtgg 109 |||||||||||||||| |||| |||||| Sbjct: 1025 ccggcagcggcggcggcggtggtggtgg 998
>ref|NM_001073352.1| Oryza sativa (japonica cultivar-group) Os12g0500800 (Os12g0500800) mRNA, complete cds Length = 2507 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gatgagcagcggcggcgcgg 75 |||||||||||||||||||| Sbjct: 92 gatgagcagcggcggcgcgg 73
>ref|NM_001073285.1| Oryza sativa (japonica cultivar-group) Os12g0472500 (Os12g0472500) mRNA, complete cds Length = 1050 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tccggcagcggcggcggagg 100 |||||||||||||||||||| Sbjct: 482 tccggcagcggcggcggagg 501
>ref|NM_001058895.1| Oryza sativa (japonica cultivar-group) Os04g0278900 (Os04g0278900) mRNA, partial cds Length = 1523 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 13 cggcagcggcggcggaggtg 32
>ref|NM_001052619.1| Oryza sativa (japonica cultivar-group) Os02g0179500 (Os02g0179500) mRNA, complete cds Length = 1080 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctgg 106 ||||||||||||||| |||||||| Sbjct: 223 cggcagcggcggcggcggtgctgg 246
>gb|CP000442.1| Burkholderia cepacia AMMD chromosome 3, complete sequence Length = 1281472 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 agcagcggcggcgcggacaa 79 |||||||||||||||||||| Sbjct: 1126421 agcagcggcggcgcggacaa 1126440
>ref|XR_020147.1| PREDICTED: Pan troglodytes hypothetical protein LOC738498 (LOC738498), mRNA Length = 3698 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctgg 106 ||||||||||||||| |||||||| Sbjct: 1223 cggcagcggcggcggcggtgctgg 1246
>ref|XR_020221.1| PREDICTED: Pan troglodytes hypothetical protein LOC737148 (LOC737148), mRNA Length = 2154 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctgg 106 ||||||||||||||| |||||||| Sbjct: 3 cggcagcggcggcggcggtgctgg 26
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gcgatggagcaaaccgaaga 250 |||||||||||||||||||| Sbjct: 3360919 gcgatggagcaaaccgaaga 3360900 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 13405322 ggcggcggaggtgctggtgg 13405303
>tpg|BK005040.1| TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 37 (WRKY37) gene, complete cds Length = 3091 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctggtggg 110 |||| ||||||||||||||| ||||||| Sbjct: 345 cggcggcggcggcggaggtggtggtggg 372
>ref|XM_001003036.1| PREDICTED: Mus musculus mucin 19 (Muc19), mRNA Length = 10223 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 3795 ggcggcggaggtgctggtgg 3776
>ref|XM_909167.2| PREDICTED: Mus musculus mucin 19 (Muc19), mRNA Length = 6838 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 3516 ggcggcggaggtgctggtgg 3497
>ref|XM_992108.1| PREDICTED: Mus musculus similar to mucin 19 (LOC667734), mRNA Length = 8317 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 3615 ggcggcggaggtgctggtgg 3596
>ref|NM_207243.2| Mus musculus mucin 19 (Muc19), mRNA gb|AY570293.2| Mus musculus Muc19 precursor mRNA, complete cds Length = 22806 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 4138 ggcggcggaggtgctggtgg 4119
>gb|AC166156.4| Mus musculus BAC clone RP24-274H19 from chromosome 3, complete sequence Length = 176294 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 60205 cctcccagtcccaccctcacaacc 60228
>gb|AC164958.3| Mus musculus BAC clone RP23-359G24 from chromosome 3, complete sequence Length = 230133 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 144267 cctcccagtcccaccctcacaacc 144290
>gb|AC163637.4| Mus musculus BAC clone RP23-186O3 from chromosome 9, complete sequence Length = 215370 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ctcccagtcccacccacaca 46 |||||||||||||||||||| Sbjct: 119963 ctcccagtcccacccacaca 119982
>gb|AC025726.2| Caenorhabditis elegans cosmid Y71G12B, complete sequence Length = 191954 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 171 ctcaactcgggcgtcgactaccgaggtattct 202 |||||||| |||||||||||||| || ||||| Sbjct: 61011 ctcaactctggcgtcgactaccgtggcattct 61042
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 3399150 cggcagcggcggcggaggtg 3399169
>gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosome 7, complete sequence Length = 213870 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 46661 cctcccagtcccaccctcacaacc 46638
>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175996 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gcgatggagcaaaccgaaga 250 |||||||||||||||||||| Sbjct: 76916 gcgatggagcaaaccgaaga 76935
>dbj|AK084991.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430021P20 product:unclassifiable, full insert sequence Length = 3702 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ctcccagtcccacccacaca 46 |||||||||||||||||||| Sbjct: 2378 ctcccagtcccacccacaca 2397
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tccggcagcggcggcggagg 100 |||||||||||||||||||| Sbjct: 170822 tccggcagcggcggcggagg 170841 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tccggcagcggcggcggagg 100 |||||||||||||||||||| Sbjct: 170849 tccggcagcggcggcggagg 170868
>gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190024 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 65470 cctcccagtcccaccctcacaacc 65447
>gb|AC151970.5| Mus musculus BAC clone RP24-255F16 from chromosome 15, complete sequence Length = 181163 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 82012 cctcccagtcccaccctcacaacc 82035
>emb|BX294155.1| Rhodopirellula baltica SH 1 complete genome; segment 23/24 Length = 306550 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcggcggcggaggtgctggt 107 |||||||||||||||||||| Sbjct: 80044 gcggcggcggaggtgctggt 80063
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 gcggcggcggaggtgctggtgggc 111 |||||||||| ||||||||||||| Sbjct: 227139 gcggcggcggtggtgctggtgggc 227162
>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16, complete sequence Length = 157801 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 36024 cggcagcggcggcggaggtg 36005
>emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome 5, BAC clone T7H20 (ESSA project) Length = 87581 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 atgttatctgtgttttttag 550 |||||||||||||||||||| Sbjct: 32998 atgttatctgtgttttttag 33017
>gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR08A22, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 101018 ggcggcggaggtgctggtgg 100999
>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the gene for a novel protein (3732413I11Rik), a novel gene (4930597A21Rik), the 5' end of the Ebf1 gene for early B-cell factor 1, a novel gene and a CpG island, complete sequence Length = 215524 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 157403 cctcccagtcccaccctcacaacc 157426
>gb|AC010995.11|AC010995 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR30C16, complete sequence Length = 185810 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 3356 ggcggcggaggtgctggtgg 3337
>gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, complete sequence Length = 200069 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aggtattctggcttgcctgg 213 |||||||||||||||||||| Sbjct: 118093 aggtattctggcttgcctgg 118112
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctgg 106 ||||||||||||||| |||||||| Sbjct: 106929 cggcagcggcggcggcggtgctgg 106952
>emb|CR390394.1| Gallus gallus finished cDNA, clone ChEST423j16 Length = 762 Score = 40.1 bits (20), Expect = 9.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 183 gtcgactaccgaggtattctggcttgcctggacggttatatgaa 226 ||||| || |||||| | |||||||||||||| || |||||||| Sbjct: 399 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaa 442
>dbj|AK110722.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-E01, full insert sequence Length = 1079 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctgg 106 ||||||||||||||| |||||||| Sbjct: 222 cggcagcggcggcggcggtgctgg 245
>dbj|AK108886.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-D12, full insert sequence Length = 932 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 52 cggcagcggcggcggaggtg 71
>dbj|AK108523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B06, full insert sequence Length = 1050 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tccggcagcggcggcggagg 100 |||||||||||||||||||| Sbjct: 482 tccggcagcggcggcggagg 501
>emb|CR354038.1| Gallus gallus finished cDNA, clone ChEST463i2 Length = 753 Score = 40.1 bits (20), Expect = 9.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 183 gtcgactaccgaggtattctggcttgcctggacggttatatgaa 226 ||||| || |||||| | |||||||||||||| || |||||||| Sbjct: 390 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaa 433
>emb|CR353169.1| Gallus gallus finished cDNA, clone ChEST781b6 Length = 482 Score = 40.1 bits (20), Expect = 9.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 183 gtcgactaccgaggtattctggcttgcctggacggttatatgaa 226 ||||| || |||||| | |||||||||||||| || |||||||| Sbjct: 117 gtcgattatcgaggtgtcctggcttgcctggatgggtatatgaa 160
>dbj|AK073070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033013H23, full insert sequence Length = 1524 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtg 102 |||||||||||||||||||| Sbjct: 14 cggcagcggcggcggaggtg 33
>dbj|AK067652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113E18, full insert sequence Length = 2509 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gatgagcagcggcggcgcgg 75 |||||||||||||||||||| Sbjct: 94 gatgagcagcggcggcgcgg 75
>dbj|AP004625.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT14E05b, TM0089b, complete sequence Length = 126514 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 gattattggttgtggtgaac 436 |||||||||||||||||||| Sbjct: 53236 gattattggttgtggtgaac 53217
>dbj|AK115117.1| Ciona intestinalis cDNA, clone:cieg032o21, full insert sequence Length = 1224 Score = 40.1 bits (20), Expect = 9.2 Identities = 128/164 (78%) Strand = Plus / Plus Query: 162 gtcgttaaactcaactcgggcgtcgactaccgaggtattctggcttgcctggacggttat 221 ||||| ||||||||||| || || || ||| ||||| |||| || ||| |||| || || Sbjct: 758 gtcgtcaaactcaactctggggttgattacagaggtgttcttgcgtgcttggatggctac 817 Query: 222 atgaacattgcgatggagcaaaccgaagagtacgtgaacggccaactgaagaacaaatat 281 |||||||| || | || ||||| ||||| || ||||| || || | |||||||| || Sbjct: 818 atgaacatagctcttgaacaaacagaagaatatgtgaatggtcagttaaagaacaagtac 877 Query: 282 ggtgacgctttcataagaggcaacaacgtcctctacatcagcac 325 || || || || || ||||||||||| || ||||||||||||| Sbjct: 878 ggagatgcatttatcagaggcaacaatgtgttctacatcagcac 921
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gatgagcagcggcggcgcgg 75 |||||||||||||||||||| Sbjct: 112757 gatgagcagcggcggcgcgg 112738
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 cggcagcggcggcggaggtgctggtggg 110 |||| ||||||||||||||| ||||||| Sbjct: 63845 cggcggcggcggcggaggtggtggtggg 63872
>emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa0006M08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136254 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tccggcagcggcggcggagg 100 |||||||||||||||||||| Sbjct: 116569 tccggcagcggcggcggagg 116550
>emb|AL450395.7| Mouse DNA sequence from clone RP23-145O4 on chromosome X, complete sequence Length = 198602 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 cctcccagtcccacccacacaacc 49 |||||||||||||||| ||||||| Sbjct: 67900 cctcccagtcccaccctcacaacc 67923
>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 45567 ggcggcggaggtgctggtgg 45586
>dbj|AB070343.1| Volvox carteri f. nagariensis lsg1 mRNA for PR-1 like protein, complete cds Length = 2560 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ggcggcggaggtgctggtgg 109 |||||||||||||||||||| Sbjct: 883 ggcggcggaggtgctggtgg 864 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 88,964,028 Number of extensions: 4597875 Number of successful extensions: 106132 Number of sequences better than 10.0: 134 Number of HSP's gapped: 106121 Number of HSP's successfully gapped: 152 Length of query: 626 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 604 Effective length of database: 18,508,616,841 Effective search space: 11179204571964 Effective search space used: 11179204571964 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
