ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf108n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT835364.1| Oryza sativa (indica cultivar-group) cDNA clone:... 82 2e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4gb|AY108817.1| Zea mays PCO124370 mRNA sequence 68 3e-08
5gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, com... 46 0.100
6gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, co... 46 0.100
7emb|CR855203.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 42 1.6
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
9emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
10emb|CT830066.1| Oryza sativa (indica cultivar-group) cDNA clone:... 40 6.1
11ref|NM_001057348.1| Oryza sativa (japonica cultivar-group) Os03g... 40 6.1
12ref|NM_001051891.1| Oryza sativa (japonica cultivar-group) Os01g... 40 6.1
13gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete ... 40 6.1
14gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.1
15gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, co... 40 6.1
16gb|AC091250.2| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 6.1
17ref|XM_546314.2| PREDICTED: Canis familiaris similar to actin fi... 40 6.1
18gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 40 6.1
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
21dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
22dbj|AK120547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
23dbj|AK104862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
24dbj|AK070677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
25dbj|AK066133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
26dbj|AK060802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
27ref|XM_556459.1| Anopheles gambiae str. PEST ENSANGP00000028322 ... 40 6.1
28dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 6.1
29dbj|AB027428.1| Oryza sativa mRNA for beta 1,3-glucanase, comple... 40 6.1

>emb|CT835364.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024J18, full
           insert sequence
          Length = 527
 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                       
Query: 231 cggcgggaaggcggccgcggacggctcgtcagacatcttggccttcgcgcgctccgtcga 290
           ||||| |||| ||||||| || |||||||| |||||| |||||||||| ||| |||||||
Sbjct: 333 cggcgagaagacggccgccgagggctcgtcggacatcctggccttcgctcgcgccgtcga 392

                        
Query: 291 ccgggtggactcc 303
           |||||||||||||
Sbjct: 393 ccgggtggactcc 405



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 231      cggcgggaaggcggccgcggacggctcgtcagacatcttggccttcgcgcgctccgtcga 290
                ||||| |||| ||||||| || |||||||| |||||| |||||||||| ||| |||||||
Sbjct: 15643696 cggcgagaagacggccgccgagggctcgtcggacatcctggccttcgctcgcgccgtcga 15643637

                             
Query: 291      ccgggtggactcc 303
                |||||||||||||
Sbjct: 15643636 ccgggtggactcc 15643624



to top

>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0035A24
          Length = 176446

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                         
Query: 231   cggcgggaaggcggccgcggacggctcgtcagacatcttggccttcgcgcgctccgtcga 290
             ||||| |||| ||||||| || |||||||| |||||| |||||||||| ||| |||||||
Sbjct: 52383 cggcgagaagacggccgccgagggctcgtcggacatcctggccttcgctcgcgccgtcga 52324

                          
Query: 291   ccgggtggactcc 303
             |||||||||||||
Sbjct: 52323 ccgggtggactcc 52311



to top

>gb|AY108817.1| Zea mays PCO124370 mRNA sequence
          Length = 462

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 262 gacatcttggccttcgcgcgctccgtcgaccgggtggactccagcctcgagtagcttt 319
           |||||| ||||||||||||||||||||||||| ||||||||    |||||||||||||
Sbjct: 271 gacatcctggccttcgcgcgctccgtcgaccgcgtggactcgcctctcgagtagcttt 328



to top

>gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, complete genome
          Length = 2998664

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 227     cggacggcgggaaggcggccgcg 249
               |||||||||||||||||||||||
Sbjct: 1699797 cggacggcgggaaggcggccgcg 1699819



to top

>gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence
          Length = 2788459

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 227    cggacggcgggaaggcggccgcg 249
              |||||||||||||||||||||||
Sbjct: 779870 cggacggcgggaaggcggccgcg 779848



to top

>emb|CR855203.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0219H12, complete
             sequence
          Length = 116014

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   cttgcttgtaccgtaggagta 355
             |||||||||||||||||||||
Sbjct: 71792 cttgcttgtaccgtaggagta 71812



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 335      cttgcttgtaccgtaggagta 355
                |||||||||||||||||||||
Sbjct: 22977314 cttgcttgtaccgtaggagta 22977334



to top

>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16,
             complete sequence
          Length = 176383

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   cttgcttgtaccgtaggagta 355
             |||||||||||||||||||||
Sbjct: 71770 cttgcttgtaccgtaggagta 71790



to top

>emb|CT830066.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN086D05, full
           insert sequence
          Length = 1290

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gccggcggacggcgggaaggcggc 245
           ||||||||||||||||||| ||||
Sbjct: 599 gccggcggacggcgggaagccggc 576



to top

>ref|NM_001057348.1| Oryza sativa (japonica cultivar-group) Os03g0657100 (Os03g0657100)
            mRNA, complete cds
          Length = 2973

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  ggcggacggcgggaaggcgg 244
            ||||||||||||||||||||
Sbjct: 2312 ggcggacggcgggaaggcgg 2331



to top

>ref|NM_001051891.1| Oryza sativa (japonica cultivar-group) Os01g0940700 (Os01g0940700)
           mRNA, complete cds
          Length = 1103

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gccggcggacggcgggaaggcggc 245
           ||||||||||||||||||| ||||
Sbjct: 426 gccggcggacggcgggaagccggc 403



to top

>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence
          Length = 2646969

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    ccggcggacggcgggaaggc 242
              ||||||||||||||||||||
Sbjct: 497606 ccggcggacggcgggaaggc 497587



to top

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     aaaatgccggcgagcgcgca 119
               ||||||||||||||||||||
Sbjct: 1151998 aaaatgccggcgagcgcgca 1151979



to top

>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence
          Length = 192019

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    acgaggaggtctcctcgctgagcc 181
              |||||||||||||||| |||||||
Sbjct: 142031 acgaggaggtctcctccctgagcc 142008



to top

>gb|AC091250.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-315E2, complete
              sequence
          Length = 201395

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     gatctaccatcccatggagg 85
              ||||||||||||||||||||
Sbjct: 153943 gatctaccatcccatggagg 153962



to top

>ref|XM_546314.2| PREDICTED: Canis familiaris similar to actin filament associated
            protein (LOC489196), mRNA
          Length = 2439

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  cgggaaggcggccgcggacg 253
            ||||||||||||||||||||
Sbjct: 2341 cgggaaggcggccgcggacg 2322



to top

>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete
             sequence
          Length = 152828

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   ggcggacggcgggaaggcgg 244
             ||||||||||||||||||||
Sbjct: 90027 ggcggacggcgggaaggcgg 90046



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 225      ggcggacggcgggaaggcgg 244
                ||||||||||||||||||||
Sbjct: 25444642 ggcggacggcgggaaggcgg 25444623



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 222      gccggcggacggcgggaaggcggc 245
                ||||||||||||||||||| ||||
Sbjct: 41340038 gccggcggacggcgggaagccggc 41340015



to top

>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0432C03
          Length = 164394

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   gccggcggacggcgggaaggcggc 245
             ||||||||||||||||||| ||||
Sbjct: 31531 gccggcggacggcgggaagccggc 31508



to top

>dbj|AK120547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129M03, full
            insert sequence
          Length = 2975

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  ggcggacggcgggaaggcgg 244
            ||||||||||||||||||||
Sbjct: 2313 ggcggacggcgggaaggcgg 2332



to top

>dbj|AK104862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E09, full
           insert sequence
          Length = 1296

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gccggcggacggcgggaaggcggc 245
           ||||||||||||||||||| ||||
Sbjct: 602 gccggcggacggcgggaagccggc 579



to top

>dbj|AK070677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063O17, full
           insert sequence
          Length = 1295

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gccggcggacggcgggaaggcggc 245
           ||||||||||||||||||| ||||
Sbjct: 601 gccggcggacggcgggaagccggc 578



to top

>dbj|AK066133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053G17, full
           insert sequence
          Length = 757

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 ggcggacggcgggaaggcgg 244
           ||||||||||||||||||||
Sbjct: 75  ggcggacggcgggaaggcgg 94



to top

>dbj|AK060802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F06, full
           insert sequence
          Length = 1103

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gccggcggacggcgggaaggcggc 245
           ||||||||||||||||||| ||||
Sbjct: 426 gccggcggacggcgggaagccggc 403



to top

>ref|XM_556459.1| Anopheles gambiae str. PEST ENSANGP00000028322 (ENSANGG00000003492),
            partial mRNA
          Length = 3942

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 219  caagccggcggacggcgggaaggcggccgcgg 250
            |||| ||| ||| |||||||||||||||||||
Sbjct: 1728 caagtcggtggatggcgggaaggcggccgcgg 1759



to top

>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    cagcacaccatccaccgccacagc 57
             ||||||||||||||||| ||||||
Sbjct: 97609 cagcacaccatccaccggcacagc 97632



to top

>dbj|AB027428.1| Oryza sativa mRNA for beta 1,3-glucanase, complete cds, clone:E1149
          Length = 1280

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 222 gccggcggacggcgggaaggcggc 245
           ||||||||||||||||||| ||||
Sbjct: 589 gccggcggacggcgggaagccggc 566


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 53,954,316
Number of extensions: 2546527
Number of successful extensions: 178234
Number of sequences better than 10.0: 29
Number of HSP's gapped: 178233
Number of HSP's successfully gapped: 29
Length of query: 424
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 402
Effective length of database: 18,508,616,841
Effective search space: 7440463970082
Effective search space used: 7440463970082
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
to top