| Clone Name | FLbaf108n20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT835364.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024J18, full insert sequence Length = 527 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 231 cggcgggaaggcggccgcggacggctcgtcagacatcttggccttcgcgcgctccgtcga 290 ||||| |||| ||||||| || |||||||| |||||| |||||||||| ||| ||||||| Sbjct: 333 cggcgagaagacggccgccgagggctcgtcggacatcctggccttcgctcgcgccgtcga 392 Query: 291 ccgggtggactcc 303 ||||||||||||| Sbjct: 393 ccgggtggactcc 405
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 231 cggcgggaaggcggccgcggacggctcgtcagacatcttggccttcgcgcgctccgtcga 290 ||||| |||| ||||||| || |||||||| |||||| |||||||||| ||| ||||||| Sbjct: 15643696 cggcgagaagacggccgccgagggctcgtcggacatcctggccttcgctcgcgccgtcga 15643637 Query: 291 ccgggtggactcc 303 ||||||||||||| Sbjct: 15643636 ccgggtggactcc 15643624
>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0035A24 Length = 176446 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 231 cggcgggaaggcggccgcggacggctcgtcagacatcttggccttcgcgcgctccgtcga 290 ||||| |||| ||||||| || |||||||| |||||| |||||||||| ||| ||||||| Sbjct: 52383 cggcgagaagacggccgccgagggctcgtcggacatcctggccttcgctcgcgccgtcga 52324 Query: 291 ccgggtggactcc 303 ||||||||||||| Sbjct: 52323 ccgggtggactcc 52311
>gb|AY108817.1| Zea mays PCO124370 mRNA sequence Length = 462 Score = 67.9 bits (34), Expect = 3e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 262 gacatcttggccttcgcgcgctccgtcgaccgggtggactccagcctcgagtagcttt 319 |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 271 gacatcctggccttcgcgcgctccgtcgaccgcgtggactcgcctctcgagtagcttt 328
>gb|CP000459.1| Burkholderia cenocepacia HI2424 chromosome 2, complete genome Length = 2998664 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 227 cggacggcgggaaggcggccgcg 249 ||||||||||||||||||||||| Sbjct: 1699797 cggacggcgggaaggcggccgcg 1699819
>gb|CP000379.1| Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence Length = 2788459 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 227 cggacggcgggaaggcggccgcg 249 ||||||||||||||||||||||| Sbjct: 779870 cggacggcgggaaggcggccgcg 779848
>emb|CR855203.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0219H12, complete sequence Length = 116014 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 cttgcttgtaccgtaggagta 355 ||||||||||||||||||||| Sbjct: 71792 cttgcttgtaccgtaggagta 71812
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 cttgcttgtaccgtaggagta 355 ||||||||||||||||||||| Sbjct: 22977314 cttgcttgtaccgtaggagta 22977334
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 cttgcttgtaccgtaggagta 355 ||||||||||||||||||||| Sbjct: 71770 cttgcttgtaccgtaggagta 71790
>emb|CT830066.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN086D05, full insert sequence Length = 1290 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 599 gccggcggacggcgggaagccggc 576
>ref|NM_001057348.1| Oryza sativa (japonica cultivar-group) Os03g0657100 (Os03g0657100) mRNA, complete cds Length = 2973 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ggcggacggcgggaaggcgg 244 |||||||||||||||||||| Sbjct: 2312 ggcggacggcgggaaggcgg 2331
>ref|NM_001051891.1| Oryza sativa (japonica cultivar-group) Os01g0940700 (Os01g0940700) mRNA, complete cds Length = 1103 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 426 gccggcggacggcgggaagccggc 403
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ccggcggacggcgggaaggc 242 |||||||||||||||||||| Sbjct: 497606 ccggcggacggcgggaaggc 497587
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 aaaatgccggcgagcgcgca 119 |||||||||||||||||||| Sbjct: 1151998 aaaatgccggcgagcgcgca 1151979
>gb|AC158554.6| Mus musculus chromosome 15, clone RP23-353O17, complete sequence Length = 192019 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 acgaggaggtctcctcgctgagcc 181 |||||||||||||||| ||||||| Sbjct: 142031 acgaggaggtctcctccctgagcc 142008
>gb|AC091250.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-315E2, complete sequence Length = 201395 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gatctaccatcccatggagg 85 |||||||||||||||||||| Sbjct: 153943 gatctaccatcccatggagg 153962
>ref|XM_546314.2| PREDICTED: Canis familiaris similar to actin filament associated protein (LOC489196), mRNA Length = 2439 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cgggaaggcggccgcggacg 253 |||||||||||||||||||| Sbjct: 2341 cgggaaggcggccgcggacg 2322
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ggcggacggcgggaaggcgg 244 |||||||||||||||||||| Sbjct: 90027 ggcggacggcgggaaggcgg 90046
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ggcggacggcgggaaggcgg 244 |||||||||||||||||||| Sbjct: 25444642 ggcggacggcgggaaggcgg 25444623
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 41340038 gccggcggacggcgggaagccggc 41340015
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 31531 gccggcggacggcgggaagccggc 31508
>dbj|AK120547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129M03, full insert sequence Length = 2975 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ggcggacggcgggaaggcgg 244 |||||||||||||||||||| Sbjct: 2313 ggcggacggcgggaaggcgg 2332
>dbj|AK104862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E09, full insert sequence Length = 1296 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 602 gccggcggacggcgggaagccggc 579
>dbj|AK070677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063O17, full insert sequence Length = 1295 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 601 gccggcggacggcgggaagccggc 578
>dbj|AK066133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053G17, full insert sequence Length = 757 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ggcggacggcgggaaggcgg 244 |||||||||||||||||||| Sbjct: 75 ggcggacggcgggaaggcgg 94
>dbj|AK060802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F06, full insert sequence Length = 1103 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 426 gccggcggacggcgggaagccggc 403
>ref|XM_556459.1| Anopheles gambiae str. PEST ENSANGP00000028322 (ENSANGG00000003492), partial mRNA Length = 3942 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 219 caagccggcggacggcgggaaggcggccgcgg 250 |||| ||| ||| ||||||||||||||||||| Sbjct: 1728 caagtcggtggatggcgggaaggcggccgcgg 1759
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 cagcacaccatccaccgccacagc 57 ||||||||||||||||| |||||| Sbjct: 97609 cagcacaccatccaccggcacagc 97632
>dbj|AB027428.1| Oryza sativa mRNA for beta 1,3-glucanase, complete cds, clone:E1149 Length = 1280 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 gccggcggacggcgggaaggcggc 245 ||||||||||||||||||| |||| Sbjct: 589 gccggcggacggcgggaagccggc 566 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 53,954,316 Number of extensions: 2546527 Number of successful extensions: 178234 Number of sequences better than 10.0: 29 Number of HSP's gapped: 178233 Number of HSP's successfully gapped: 29 Length of query: 424 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 402 Effective length of database: 18,508,616,841 Effective search space: 7440463970082 Effective search space used: 7440463970082 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)