ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf108n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9ESR9:ABCA2_RAT ATP-binding cassette sub-family A member 2 - Ra... 33 1.8
2P41234:ABCA2_MOUSE ATP-binding cassette sub-family A member 2 - ... 33 1.8
3Q9BZC7:ABCA2_HUMAN ATP-binding cassette sub-family A member 2 - ... 32 4.1
4Q01745:GAOA_GIBZE Galactose oxidase precursor - Gibberella zeae ... 32 5.3

>Q9ESR9:ABCA2_RAT ATP-binding cassette sub-family A member 2 - Rattus norvegicus|
           (Rat)
          Length = 2434
 Score = 33.5 bits (75), Expect = 1.8
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 231 LHIHHLLPDLWFACAVMA-AGLLYCAILLAVYIAAEFSSGC--CFYFYTGLASVMILLEE 401
           +H H L+  +W   AV A A +++C ++  +Y  A+ +S C    YF + +  + + + E
Sbjct: 778 MHSHVLI--IWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIRE 835

Query: 402 AVAHN 416
            VAH+
Sbjct: 836 EVAHD 840



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>P41234:ABCA2_MOUSE ATP-binding cassette sub-family A member 2 - Mus musculus (Mouse)|
          Length = 2434

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 231 LHIHHLLPDLWFACAVMA-AGLLYCAILLAVYIAAEFSSGC--CFYFYTGLASVMILLEE 401
           +H H L+  +W   AV A A +++C ++  +Y  A+ +S C    YF + +  + + + E
Sbjct: 777 MHSHVLI--IWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIRE 834

Query: 402 AVAHN 416
            VAH+
Sbjct: 835 EVAHD 839



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>Q9BZC7:ABCA2_HUMAN ATP-binding cassette sub-family A member 2 - Homo sapiens (Human)|
          Length = 2436

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +3

Query: 231 LHIHHLLPDLWFACAVMA-AGLLYCAILLAVYIAAEFSSGC--CFYFYTGLASVMILLEE 401
           +H H ++  +W   AV A A +++C ++  +Y  A+ +S C    YF + +  + + + E
Sbjct: 779 MHSHVVI--IWLFLAVYAVATIMFCFLVSVLYSKAKLASACGGIIYFLSYVPYMYVAIRE 836

Query: 402 AVAHN 416
            VAH+
Sbjct: 837 EVAHD 841



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>Q01745:GAOA_GIBZE Galactose oxidase precursor - Gibberella zeae (Fusarium|
           graminearum)
          Length = 680

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +3

Query: 600 SSDYDNNEDFVVIRKPLLIAQGAPSYLPTTADPKGVHPNLWSSSMRQKYG-LSSSRDYTY 776
           +S YD++ D  +    + +A+G  S    +          WS  + +K G + S    T+
Sbjct: 291 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 350

Query: 777 NTLDQNAVRPQ*EASVRQVMKKEGHAWLY-WK 869
            +L    V P   A  + + + + HAWL+ WK
Sbjct: 351 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK 382


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 179,916,820
Number of extensions: 3731622
Number of successful extensions: 10030
Number of sequences better than 10.0: 4
Number of HSP's gapped: 10004
Number of HSP's successfully gapped: 4
Length of query: 407
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 291
Effective length of database: 68,868,219
Effective search space: 20040651729
Effective search space used: 20040651729
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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