| Clone Name | FLbaf106c13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC190210.1| Macaca mulatta chromosome UNK clone CH250-35H12, complete sequence Length = 157068 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 407 cctccagctgcttcctcactgtc 429 ||||||||||||||||||||||| Sbjct: 56227 cctccagctgcttcctcactgtc 56249
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 401 ccgccgcctccagctgcttcctc 423 ||||||||||||||||||||||| Sbjct: 8454 ccgccgcctccagctgcttcctc 8432 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 401 ccgccgcctccagctgcttcctc 423 ||||||||||||||||||||||| Sbjct: 8646 ccgccgcctccagctgcttcctc 8624
>emb|AL049738.4|HSJ944N18 Human DNA sequence from clone RP5-944N18 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 122383 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 407 cctccagctgcttcctcactgtc 429 ||||||||||||||||||||||| Sbjct: 60211 cctccagctgcttcctcactgtc 60189
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 tgcgcgaccccgccgccgctgcc 119 ||||||||||||||||||||||| Sbjct: 1711218 tgcgcgaccccgccgccgctgcc 1711196
>ref|NM_212373.1| Eremothecium gossypii AFR689Wp (AFR689W), mRNA Length = 1554 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 97 tgcgcgaccccgccgccgctgcc 119 ||||||||||||||||||||||| Sbjct: 187 tgcgcgaccccgccgccgctgcc 165
>gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23, complete sequence Length = 86113 Score = 44.1 bits (22), Expect = 0.84 Identities = 25/26 (96%) Strand = Plus / Minus Query: 184 atcctcctgcctcggccccaacaccc 209 ||||||||||||| |||||||||||| Sbjct: 35530 atcctcctgcctcagccccaacaccc 35505
>gb|AC069185.7| Homo sapiens chromosome 8, clone RP11-297N6, complete sequence Length = 169079 Score = 44.1 bits (22), Expect = 0.84 Identities = 25/26 (96%) Strand = Plus / Minus Query: 184 atcctcctgcctcggccccaacaccc 209 ||||||||||||| |||||||||||| Sbjct: 164900 atcctcctgcctcagccccaacaccc 164875
>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence Length = 190779 Score = 44.1 bits (22), Expect = 0.84 Identities = 22/22 (100%) Strand = Plus / Minus Query: 183 catcctcctgcctcggccccaa 204 |||||||||||||||||||||| Sbjct: 43090 catcctcctgcctcggccccaa 43069
>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence Length = 175749 Score = 44.1 bits (22), Expect = 0.84 Identities = 25/26 (96%) Strand = Plus / Minus Query: 184 atcctcctgcctcggccccaacaccc 209 ||||||||||||| |||||||||||| Sbjct: 108522 atcctcctgcctcagccccaacaccc 108497
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.84 Identities = 22/22 (100%) Strand = Plus / Minus Query: 263 cgccccagccggccaccgcaac 284 |||||||||||||||||||||| Sbjct: 7239159 cgccccagccggccaccgcaac 7239138 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 ccgtgcgcgaccccgccgccg 114 ||||||||||||||||||||| Sbjct: 957983 ccgtgcgcgaccccgccgccg 958003
>gb|CP000450.1| Nitrosomonas eutropha C71, complete genome Length = 2661057 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 837 ttctgctctgtagattttgct 857 ||||||||||||||||||||| Sbjct: 807106 ttctgctctgtagattttgct 807126
>gb|AC152987.1| Mus musculus 6 BAC RP23-133N21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196532 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 ccccatccccctgactgtgca 358 ||||||||||||||||||||| Sbjct: 108667 ccccatccccctgactgtgca 108687
>gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0024E08, complete sequence Length = 131946 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 cgcgaccccgccgccgctgcccccg 123 |||||||| |||||||||||||||| Sbjct: 56656 cgcgacccggccgccgctgcccccg 56632
>dbj|AK124239.1| Homo sapiens cDNA FLJ42245 fis, clone TKIDN2006525 Length = 2429 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 734 tatttttagctgctatgtttt 754 ||||||||||||||||||||| Sbjct: 123 tatttttagctgctatgtttt 143
>gb|AE012060.1| Xanthomonas axonopodis pv. citri str. 306, section 438 of 469 of the complete genome Length = 15516 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 gcgcgaccccgccgccgctgc 118 ||||||||||||||||||||| Sbjct: 11768 gcgcgaccccgccgccgctgc 11748
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 729 tcttttatttttagctgctat 749 ||||||||||||||||||||| Sbjct: 99449 tcttttatttttagctgctat 99429
>emb|X15903.1|CHECAPO E.gracilis chloroplast psbB gene for chlorophyl a apoprotein (51Kd) photosystem II Length = 3532 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 729 tcttttatttttagctgctat 749 ||||||||||||||||||||| Sbjct: 1077 tcttttatttttagctgctat 1097
>emb|AL135927.14| Human DNA sequence from clone RP11-54H19 on chromosome 1 Contains the 3' end of the LMNA gene for lamin A/C, the gene for a novel protein similar to semaphorins (FLJ12287), a novel gene (KIAA0446), the PMF1 gene for polyamine-modulated factor 1, the BGLAP gene for bone gamma-carboxyglutamate (gla) protein (osteocalcin), the gene for progestin and adipoQ receptor family member VI (PAQR6) and the 3' end of the gene for Est1p-like protein B (EST1B), complete sequence Length = 164168 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 tcatcctcctgcctcggcccc 202 ||||||||||||||||||||| Sbjct: 147320 tcatcctcctgcctcggcccc 147340
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 cgcgaccccgccgccgctgcccccg 123 |||||||| |||||||||||||||| Sbjct: 26033089 cgcgacccggccgccgctgcccccg 26033065
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 ccgtgcgcgaccccgccgccgctgc 118 |||||||||||||||| |||||||| Sbjct: 28778821 ccgtgcgcgaccccgctgccgctgc 28778845
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 ccccgccgccgctgcccccgc 124 ||||||||||||||||||||| Sbjct: 20336639 ccccgccgccgctgcccccgc 20336619
>gb|AC087821.5| Homo sapiens chromosome 8, clone RP11-108A14, complete sequence Length = 167949 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 183 catcctcctgcctcggcccca 203 ||||||||||||||||||||| Sbjct: 167591 catcctcctgcctcggcccca 167571
>emb|AL355504.17| Human DNA sequence from clone RP11-218A18 on chromosome 13 Contains a mitochondrial import receptor Tom22 pseudogene, complete sequence Length = 60159 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tcatcctcctgcctcggcccc 202 ||||||||||||||||||||| Sbjct: 5338 tcatcctcctgcctcggcccc 5318
>emb|AL354943.9| Human DNA sequence from clone RP11-160A9 on chromosome 6 Contains a solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator) member 6 (SLC25A6) pseudogene, an NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1 (8kD, SDAP) (NDUFAB1) pseudogene, the 5' end of the gene for stromal membrane-associated protein SMAP1 and a CpG island, complete sequence Length = 151445 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 734 tatttttagctgctatgtttt 754 ||||||||||||||||||||| Sbjct: 123611 tatttttagctgctatgtttt 123591
>emb|AL035697.19|HS45F6 Human DNA sequence from clone RP1-45F6 on chromosome 6q25.3-27 Contains part of the PARK2 gene for Parkinson disease (autosomal recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP), complete sequence Length = 134780 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 578 ttctgtttccttttcagtttc 598 ||||||||||||||||||||| Sbjct: 120229 ttctgtttccttttcagtttc 120209
>gb|AC009884.8| Homo sapiens chromosome 8, clone RP11-420B22, complete sequence Length = 161443 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 catcctcctgcctcggcccca 203 ||||||||||||||||||||| Sbjct: 121323 catcctcctgcctcggcccca 121343
>emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 on chromosome 13. Contains a novel gene, a mitochondrial import receptor TOM22 pseudogene, the 5' end of the KL gene for klotho, ESTs, STSs and a CpG island, complete sequence Length = 146810 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tcatcctcctgcctcggcccc 202 ||||||||||||||||||||| Sbjct: 37092 tcatcctcctgcctcggcccc 37072
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 cgcgaccccgccgccgctgcc 119 ||||||||||||||||||||| Sbjct: 2792024 cgcgaccccgccgccgctgcc 2792004
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 ccccgccgccgctgcccccgc 124 ||||||||||||||||||||| Sbjct: 67272 ccccgccgccgctgcccccgc 67252
>gb|AC064870.5| Homo sapiens BAC clone RP11-575E20 from 2, complete sequence Length = 133478 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 840 tgctctgtagattttgctttt 860 ||||||||||||||||||||| Sbjct: 15099 tgctctgtagattttgctttt 15079
>gb|AC127002.3| Homo sapiens 12 BAC RP11-15J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 128829 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 tgttctgtttccttttcagtt 596 ||||||||||||||||||||| Sbjct: 117742 tgttctgtttccttttcagtt 117722
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 ccgtgcgcgaccccgccgccgctgc 118 |||||||||||||||| |||||||| Sbjct: 86596 ccgtgcgcgaccccgctgccgctgc 86620
>gb|AC092640.3| Homo sapiens BAC clone RP11-387P12 from 2, complete sequence Length = 161788 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 catcctcctgcctcggcccca 203 ||||||||||||||||||||| Sbjct: 73282 catcctcctgcctcggcccca 73302
>gb|AC007227.3|AC007227 Homo sapiens chromosome 1 clone RPCI-11_54H19, complete sequence Length = 164179 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tcatcctcctgcctcggcccc 202 ||||||||||||||||||||| Sbjct: 16849 tcatcctcctgcctcggcccc 16829
>dbj|AP001024.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832N8, complete sequence Length = 183444 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tcatcctcctgcctcggcccc 202 ||||||||||||||||||||| Sbjct: 147043 tcatcctcctgcctcggcccc 147023 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 151,032,799 Number of extensions: 9130370 Number of successful extensions: 252063 Number of sequences better than 10.0: 35 Number of HSP's gapped: 252063 Number of HSP's successfully gapped: 37 Length of query: 884 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 862 Effective length of database: 18,508,616,841 Effective search space: 15954427716942 Effective search space used: 15954427716942 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)