ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf106c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC190210.1| Macaca mulatta chromosome UNK clone CH250-35H12, ... 46 0.21
2gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 46 0.21
3emb|AL049738.4|HSJ944N18 Human DNA sequence from clone RP5-944N1... 46 0.21
4gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 46 0.21
5ref|NM_212373.1| Eremothecium gossypii AFR689Wp (AFR689W), mRNA 46 0.21
6gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23,... 44 0.84
7gb|AC069185.7| Homo sapiens chromosome 8, clone RP11-297N6, comp... 44 0.84
8gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, com... 44 0.84
9gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, com... 44 0.84
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.84
11gb|CP000450.1| Nitrosomonas eutropha C71, complete genome 42 3.3
12gb|AC152987.1| Mus musculus 6 BAC RP23-133N21 (Roswell Park Canc... 42 3.3
13gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome... 42 3.3
14dbj|AK124239.1| Homo sapiens cDNA FLJ42245 fis, clone TKIDN2006525 42 3.3
15gb|AE012060.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 3.3
16emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome 42 3.3
17emb|X15903.1|CHECAPO E.gracilis chloroplast psbB gene for chloro... 42 3.3
18emb|AL135927.14| Human DNA sequence from clone RP11-54H19 on chr... 42 3.3
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
22gb|AC087821.5| Homo sapiens chromosome 8, clone RP11-108A14, com... 42 3.3
23emb|AL355504.17| Human DNA sequence from clone RP11-218A18 on ch... 42 3.3
24emb|AL354943.9| Human DNA sequence from clone RP11-160A9 on chro... 42 3.3
25emb|AL035697.19|HS45F6 Human DNA sequence from clone RP1-45F6 on... 42 3.3
26gb|AC009884.8| Homo sapiens chromosome 8, clone RP11-420B22, com... 42 3.3
27emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 ... 42 3.3
28gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 3.3
29emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 42 3.3
30gb|AC064870.5| Homo sapiens BAC clone RP11-575E20 from 2, comple... 42 3.3
31gb|AC127002.3| Homo sapiens 12 BAC RP11-15J22 (Roswell Park Canc... 42 3.3
32dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
33gb|AC092640.3| Homo sapiens BAC clone RP11-387P12 from 2, comple... 42 3.3
34gb|AC007227.3|AC007227 Homo sapiens chromosome 1 clone RPCI-11_5... 42 3.3
35dbj|AP001024.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 3.3

>gb|AC190210.1| Macaca mulatta chromosome UNK clone CH250-35H12, complete sequence
          Length = 157068
 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 407   cctccagctgcttcctcactgtc 429
             |||||||||||||||||||||||
Sbjct: 56227 cctccagctgcttcctcactgtc 56249



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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 401  ccgccgcctccagctgcttcctc 423
            |||||||||||||||||||||||
Sbjct: 8454 ccgccgcctccagctgcttcctc 8432



 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 401  ccgccgcctccagctgcttcctc 423
            |||||||||||||||||||||||
Sbjct: 8646 ccgccgcctccagctgcttcctc 8624



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>emb|AL049738.4|HSJ944N18 Human DNA sequence from clone RP5-944N18 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 122383

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 407   cctccagctgcttcctcactgtc 429
             |||||||||||||||||||||||
Sbjct: 60211 cctccagctgcttcctcactgtc 60189



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 97      tgcgcgaccccgccgccgctgcc 119
               |||||||||||||||||||||||
Sbjct: 1711218 tgcgcgaccccgccgccgctgcc 1711196



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>ref|NM_212373.1| Eremothecium gossypii AFR689Wp (AFR689W), mRNA
          Length = 1554

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 97  tgcgcgaccccgccgccgctgcc 119
           |||||||||||||||||||||||
Sbjct: 187 tgcgcgaccccgccgccgctgcc 165



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>gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23, complete sequence
          Length = 86113

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 184   atcctcctgcctcggccccaacaccc 209
             ||||||||||||| ||||||||||||
Sbjct: 35530 atcctcctgcctcagccccaacaccc 35505



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>gb|AC069185.7| Homo sapiens chromosome 8, clone RP11-297N6, complete sequence
          Length = 169079

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 184    atcctcctgcctcggccccaacaccc 209
              ||||||||||||| ||||||||||||
Sbjct: 164900 atcctcctgcctcagccccaacaccc 164875



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>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence
          Length = 190779

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 183   catcctcctgcctcggccccaa 204
             ||||||||||||||||||||||
Sbjct: 43090 catcctcctgcctcggccccaa 43069



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>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence
          Length = 175749

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 184    atcctcctgcctcggccccaacaccc 209
              ||||||||||||| ||||||||||||
Sbjct: 108522 atcctcctgcctcagccccaacaccc 108497



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.84
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 263     cgccccagccggccaccgcaac 284
               ||||||||||||||||||||||
Sbjct: 7239159 cgccccagccggccaccgcaac 7239138



 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 94     ccgtgcgcgaccccgccgccg 114
              |||||||||||||||||||||
Sbjct: 957983 ccgtgcgcgaccccgccgccg 958003



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>gb|CP000450.1| Nitrosomonas eutropha C71, complete genome
          Length = 2661057

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 837    ttctgctctgtagattttgct 857
              |||||||||||||||||||||
Sbjct: 807106 ttctgctctgtagattttgct 807126



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>gb|AC152987.1| Mus musculus 6 BAC RP23-133N21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196532

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 338    ccccatccccctgactgtgca 358
              |||||||||||||||||||||
Sbjct: 108667 ccccatccccctgactgtgca 108687



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>gb|AC129226.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0024E08, complete sequence
          Length = 131946

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 99    cgcgaccccgccgccgctgcccccg 123
             |||||||| ||||||||||||||||
Sbjct: 56656 cgcgacccggccgccgctgcccccg 56632



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>dbj|AK124239.1| Homo sapiens cDNA FLJ42245 fis, clone TKIDN2006525
          Length = 2429

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 734 tatttttagctgctatgtttt 754
           |||||||||||||||||||||
Sbjct: 123 tatttttagctgctatgtttt 143



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>gb|AE012060.1| Xanthomonas axonopodis pv. citri str. 306,  section 438 of 469 of the
             complete genome
          Length = 15516

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    gcgcgaccccgccgccgctgc 118
             |||||||||||||||||||||
Sbjct: 11768 gcgcgaccccgccgccgctgc 11748



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>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome
          Length = 143171

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 729   tcttttatttttagctgctat 749
             |||||||||||||||||||||
Sbjct: 99449 tcttttatttttagctgctat 99429



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>emb|X15903.1|CHECAPO E.gracilis chloroplast psbB gene for chlorophyl a apoprotein (51Kd)
            photosystem II
          Length = 3532

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 729  tcttttatttttagctgctat 749
            |||||||||||||||||||||
Sbjct: 1077 tcttttatttttagctgctat 1097



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>emb|AL135927.14| Human DNA sequence from clone RP11-54H19 on chromosome 1 Contains the 3'
              end of the LMNA gene for lamin A/C, the gene for a novel
              protein similar to semaphorins (FLJ12287), a novel gene
              (KIAA0446), the PMF1 gene for polyamine-modulated factor 1,
              the BGLAP gene for bone gamma-carboxyglutamate (gla)
              protein (osteocalcin), the gene for progestin and adipoQ
              receptor family member VI (PAQR6) and the 3' end of the
              gene for Est1p-like protein B (EST1B), complete sequence
          Length = 164168

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    tcatcctcctgcctcggcccc 202
              |||||||||||||||||||||
Sbjct: 147320 tcatcctcctgcctcggcccc 147340



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 99       cgcgaccccgccgccgctgcccccg 123
                |||||||| ||||||||||||||||
Sbjct: 26033089 cgcgacccggccgccgctgcccccg 26033065



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 94       ccgtgcgcgaccccgccgccgctgc 118
                |||||||||||||||| ||||||||
Sbjct: 28778821 ccgtgcgcgaccccgctgccgctgc 28778845



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 104      ccccgccgccgctgcccccgc 124
                |||||||||||||||||||||
Sbjct: 20336639 ccccgccgccgctgcccccgc 20336619



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>gb|AC087821.5| Homo sapiens chromosome 8, clone RP11-108A14, complete sequence
          Length = 167949

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    catcctcctgcctcggcccca 203
              |||||||||||||||||||||
Sbjct: 167591 catcctcctgcctcggcccca 167571



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>emb|AL355504.17| Human DNA sequence from clone RP11-218A18 on chromosome 13 Contains a
            mitochondrial import receptor Tom22 pseudogene, complete
            sequence
          Length = 60159

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 182  tcatcctcctgcctcggcccc 202
            |||||||||||||||||||||
Sbjct: 5338 tcatcctcctgcctcggcccc 5318



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>emb|AL354943.9| Human DNA sequence from clone RP11-160A9 on chromosome 6 Contains a
              solute carrier family 25 (mitochondrial carrier, adenine
              nucleotide translocator) member 6 (SLC25A6) pseudogene, an
              NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1
              (8kD, SDAP) (NDUFAB1) pseudogene, the 5' end of the gene
              for stromal membrane-associated protein SMAP1 and a CpG
              island, complete sequence
          Length = 151445

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 734    tatttttagctgctatgtttt 754
              |||||||||||||||||||||
Sbjct: 123611 tatttttagctgctatgtttt 123591



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>emb|AL035697.19|HS45F6 Human DNA sequence from clone RP1-45F6 on chromosome 6q25.3-27 Contains
              part of the PARK2 gene for Parkinson disease (autosomal
              recessive, juvenile) 2, parkin (PDJ, PRKN, AR-JP), complete
              sequence
          Length = 134780

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 578    ttctgtttccttttcagtttc 598
              |||||||||||||||||||||
Sbjct: 120229 ttctgtttccttttcagtttc 120209



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>gb|AC009884.8| Homo sapiens chromosome 8, clone RP11-420B22, complete sequence
          Length = 161443

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    catcctcctgcctcggcccca 203
              |||||||||||||||||||||
Sbjct: 121323 catcctcctgcctcggcccca 121343



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>emb|Z92540.1|HS179I15A Human DNA sequence from clone RP1-179I15 on chromosome 13. Contains a
             novel gene, a mitochondrial import receptor TOM22
             pseudogene, the 5' end of the KL gene for klotho, ESTs,
             STSs and a CpG island, complete sequence
          Length = 146810

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   tcatcctcctgcctcggcccc 202
             |||||||||||||||||||||
Sbjct: 37092 tcatcctcctgcctcggcccc 37072



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 99      cgcgaccccgccgccgctgcc 119
               |||||||||||||||||||||
Sbjct: 2792024 cgcgaccccgccgccgctgcc 2792004



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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   ccccgccgccgctgcccccgc 124
             |||||||||||||||||||||
Sbjct: 67272 ccccgccgccgctgcccccgc 67252



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>gb|AC064870.5| Homo sapiens BAC clone RP11-575E20 from 2, complete sequence
          Length = 133478

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 840   tgctctgtagattttgctttt 860
             |||||||||||||||||||||
Sbjct: 15099 tgctctgtagattttgctttt 15079



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>gb|AC127002.3| Homo sapiens 12 BAC RP11-15J22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 128829

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 576    tgttctgtttccttttcagtt 596
              |||||||||||||||||||||
Sbjct: 117742 tgttctgtttccttttcagtt 117722



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>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 94    ccgtgcgcgaccccgccgccgctgc 118
             |||||||||||||||| ||||||||
Sbjct: 86596 ccgtgcgcgaccccgctgccgctgc 86620



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>gb|AC092640.3| Homo sapiens BAC clone RP11-387P12 from 2, complete sequence
          Length = 161788

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   catcctcctgcctcggcccca 203
             |||||||||||||||||||||
Sbjct: 73282 catcctcctgcctcggcccca 73302



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>gb|AC007227.3|AC007227 Homo sapiens chromosome 1 clone RPCI-11_54H19, complete sequence
          Length = 164179

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   tcatcctcctgcctcggcccc 202
             |||||||||||||||||||||
Sbjct: 16849 tcatcctcctgcctcggcccc 16829



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>dbj|AP001024.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-832N8, complete
              sequence
          Length = 183444

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    tcatcctcctgcctcggcccc 202
              |||||||||||||||||||||
Sbjct: 147043 tcatcctcctgcctcggcccc 147023


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 151,032,799
Number of extensions: 9130370
Number of successful extensions: 252063
Number of sequences better than 10.0: 35
Number of HSP's gapped: 252063
Number of HSP's successfully gapped: 37
Length of query: 884
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 862
Effective length of database: 18,508,616,841
Effective search space: 15954427716942
Effective search space used: 15954427716942
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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