ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf108k24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829118.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA053E06, full insert sequence Length = 825 Score = 281 bits (142), Expect = 2e-72 Identities = 244/278 (87%) Strand = Plus / Plus Query: 132 ccggagctacccaagaggtgccaccactgcgcagggcctctctccaaggacatggaaact 191 |||||| | |||| |||||||||||||||||| || || |||||||||||||||||||| Sbjct: 137 ccggagatccccacgaggtgccaccactgcgccggccccctctccaaggacatggaaacg 196 Query: 192 agcagctggaccgtgactccattggttcgagatagcttctcaatgattggttccgctgtt 251 ||||||||||| ||| ||||| ||||||||||||||||||| ||||||||||| ||| || Sbjct: 197 agcagctggacggtgcctccactggttcgagatagcttctccatgattggttctgctatt 256 Query: 252 gggggtactgcaggcgcgttttatgcatttaatcatgctatgcctgttgttcggcgttac 311 |||||||| || || || ||||||| || || || |||||||| ||||||| || ||| Sbjct: 257 gggggtacagctggagcattttatggtttcaaccacactatgccttttgttcgacggtac 316 Query: 312 ataaaagggccaatgtggatacattttcttgttggtgcccctccagttgttgtattctct 371 |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| Sbjct: 317 ataaaagggccaatgtggatgcattttcttgttggtgcacctccagttattgtcttctct 376 Query: 372 tctgcgtgtgctggattagcagctggtacaataccagc 409 ||||| |||||||| ||||||| ||| ||||||||||| Sbjct: 377 tctgcatgtgctgggttagcaggtgggacaataccagc 414
>ref|NM_001049199.1| Oryza sativa (japonica cultivar-group) Os01g0264500 (Os01g0264500) mRNA, complete cds Length = 801 Score = 281 bits (142), Expect = 2e-72 Identities = 244/278 (87%) Strand = Plus / Plus Query: 132 ccggagctacccaagaggtgccaccactgcgcagggcctctctccaaggacatggaaact 191 |||||| | |||| |||||||||||||||||| || || |||||||||||||||||||| Sbjct: 114 ccggagatccccacgaggtgccaccactgcgccggccccctctccaaggacatggaaacg 173 Query: 192 agcagctggaccgtgactccattggttcgagatagcttctcaatgattggttccgctgtt 251 ||||||||||| ||| ||||| ||||||||||||||||||| ||||||||||| ||| || Sbjct: 174 agcagctggacggtgcctccactggttcgagatagcttctccatgattggttctgctatt 233 Query: 252 gggggtactgcaggcgcgttttatgcatttaatcatgctatgcctgttgttcggcgttac 311 |||||||| || || || ||||||| || || || |||||||| ||||||| || ||| Sbjct: 234 gggggtacagctggagcattttatggtttcaaccacactatgccttttgttcgacggtac 293 Query: 312 ataaaagggccaatgtggatacattttcttgttggtgcccctccagttgttgtattctct 371 |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| Sbjct: 294 ataaaagggccaatgtggatgcattttcttgttggtgcacctccagttattgtcttctct 353 Query: 372 tctgcgtgtgctggattagcagctggtacaataccagc 409 ||||| |||||||| ||||||| ||| ||||||||||| Sbjct: 354 tctgcatgtgctgggttagcaggtgggacaataccagc 391
>dbj|AK062518.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C10, full insert sequence Length = 801 Score = 281 bits (142), Expect = 2e-72 Identities = 244/278 (87%) Strand = Plus / Plus Query: 132 ccggagctacccaagaggtgccaccactgcgcagggcctctctccaaggacatggaaact 191 |||||| | |||| |||||||||||||||||| || || |||||||||||||||||||| Sbjct: 114 ccggagatccccacgaggtgccaccactgcgccggccccctctccaaggacatggaaacg 173 Query: 192 agcagctggaccgtgactccattggttcgagatagcttctcaatgattggttccgctgtt 251 ||||||||||| ||| ||||| ||||||||||||||||||| ||||||||||| ||| || Sbjct: 174 agcagctggacggtgcctccactggttcgagatagcttctccatgattggttctgctatt 233 Query: 252 gggggtactgcaggcgcgttttatgcatttaatcatgctatgcctgttgttcggcgttac 311 |||||||| || || || ||||||| || || || |||||||| ||||||| || ||| Sbjct: 234 gggggtacagctggagcattttatggtttcaaccacactatgccttttgttcgacggtac 293 Query: 312 ataaaagggccaatgtggatacattttcttgttggtgcccctccagttgttgtattctct 371 |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||| Sbjct: 294 ataaaagggccaatgtggatgcattttcttgttggtgcacctccagttattgtcttctct 353 Query: 372 tctgcgtgtgctggattagcagctggtacaataccagc 409 ||||| |||||||| ||||||| ||| ||||||||||| Sbjct: 354 tctgcatgtgctgggttagcaggtgggacaataccagc 391
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 288 gctatgcctgttgttcggcgttacataaaagggccaatgtggatacattttcttgttggt 347 ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 8989450 gctatgccttttgttcgacggtacataaaagggccaatgtggatgcattttcttgttggt 8989509 Query: 348 g 348 | Sbjct: 8989510 g 8989510 Score = 63.9 bits (32), Expect = 8e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 185 ggaaactagcagctggaccgtgactccattggttcgagatagcttctc 232 |||||| ||||||||||| ||| ||||| ||||||||||||||||||| Sbjct: 8988479 ggaaacgagcagctggacggtgcctccactggttcgagatagcttctc 8988526 Score = 61.9 bits (31), Expect = 3e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 132 ccggagctacccaagaggtgccaccactgcgcagggcctctctccaaggacatgg 186 |||||| | |||| |||||||||||||||||| || || |||||||||||||||| Sbjct: 8988024 ccggagatccccacgaggtgccaccactgcgccggccccctctccaaggacatgg 8988078 Score = 54.0 bits (27), Expect = 8e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 351 cctccagttgttgtattctcttctgcgtgtgctggattagcag 393 ||||||||| |||| ||||||||||| |||||||| ||||||| Sbjct: 8990332 cctccagttattgtcttctcttctgcatgtgctgggttagcag 8990374
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 288 gctatgcctgttgttcggcgttacataaaagggccaatgtggatacattttcttgttggt 347 ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 97205 gctatgccttttgttcgacggtacataaaagggccaatgtggatgcattttcttgttggt 97264 Query: 348 g 348 | Sbjct: 97265 g 97265 Score = 63.9 bits (32), Expect = 8e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 185 ggaaactagcagctggaccgtgactccattggttcgagatagcttctc 232 |||||| ||||||||||| ||| ||||| ||||||||||||||||||| Sbjct: 96234 ggaaacgagcagctggacggtgcctccactggttcgagatagcttctc 96281 Score = 61.9 bits (31), Expect = 3e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 132 ccggagctacccaagaggtgccaccactgcgcagggcctctctccaaggacatgg 186 |||||| | |||| |||||||||||||||||| || || |||||||||||||||| Sbjct: 95779 ccggagatccccacgaggtgccaccactgcgccggccccctctccaaggacatgg 95833 Score = 54.0 bits (27), Expect = 8e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 351 cctccagttgttgtattctcttctgcgtgtgctggattagcag 393 ||||||||| |||| ||||||||||| |||||||| ||||||| Sbjct: 98087 cctccagttattgtcttctcttctgcatgtgctgggttagcag 98129
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Plus Query: 288 gctatgcctgttgttcggcgttacataaaagggccaatgtggatacattttcttgttggt 347 ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 18457 gctatgccttttgttcgacggtacataaaagggccaatgtggatgcattttcttgttggt 18516 Query: 348 g 348 | Sbjct: 18517 g 18517 Score = 63.9 bits (32), Expect = 8e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 185 ggaaactagcagctggaccgtgactccattggttcgagatagcttctc 232 |||||| ||||||||||| ||| ||||| ||||||||||||||||||| Sbjct: 17486 ggaaacgagcagctggacggtgcctccactggttcgagatagcttctc 17533 Score = 61.9 bits (31), Expect = 3e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 132 ccggagctacccaagaggtgccaccactgcgcagggcctctctccaaggacatgg 186 |||||| | |||| |||||||||||||||||| || || |||||||||||||||| Sbjct: 17031 ccggagatccccacgaggtgccaccactgcgccggccccctctccaaggacatgg 17085 Score = 54.0 bits (27), Expect = 8e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 351 cctccagttgttgtattctcttctgcgtgtgctggattagcag 393 ||||||||| |||| ||||||||||| |||||||| ||||||| Sbjct: 19339 cctccagttattgtcttctcttctgcatgtgctgggttagcag 19381
>ref|NM_111275.3| Arabidopsis thaliana unknown protein (AT3G04040) mRNA, complete cds Length = 765 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 222 gatagcttctcaatgattggttccgctgttgggggtactgca 263 ||||||||||| |||||||| || |||||||| ||||||||| Sbjct: 232 gatagcttctctatgattggatcagctgttggtggtactgca 273
>gb|BT011280.1| Arabidopsis thaliana At3g04040 gene, complete cds Length = 417 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 222 gatagcttctcaatgattggttccgctgttgggggtactgca 263 ||||||||||| |||||||| || |||||||| ||||||||| Sbjct: 118 gatagcttctctatgattggatcagctgttggtggtactgca 159
>gb|BT010806.1| Arabidopsis thaliana At3g04040 mRNA, complete cds Length = 605 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 222 gatagcttctcaatgattggttccgctgttgggggtactgca 263 ||||||||||| |||||||| || |||||||| ||||||||| Sbjct: 146 gatagcttctctatgattggatcagctgttggtggtactgca 187
>emb|AL161498.2|ATCHRIV10 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 10 Length = 196296 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 170 tctctccaaggacatggaaactag 193 |||||||||||||||||||||||| Sbjct: 48057 tctctccaaggacatggaaactag 48034 Score = 44.1 bits (22), Expect = 0.77 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactagc 194 |||||||||||||||||||||| Sbjct: 34580 ctccaaggacatggaaactagc 34559 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 7325 ctccaaggacatggaaactag 7305 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 11192 ctccaaggacatggaaactag 11172 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 13141 ctccaaggacatggaaactag 13121 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 15098 ctccaaggacatggaaactag 15078 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 17058 ctccaaggacatggaaactag 17038 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 18995 ctccaaggacatggaaactag 18975 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 20944 ctccaaggacatggaaactag 20924 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 22892 ctccaaggacatggaaactag 22872 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 24840 ctccaaggacatggaaactag 24820 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 26789 ctccaaggacatggaaactag 26769 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 30685 ctccaaggacatggaaactag 30665 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 32631 ctccaaggacatggaaactag 32611
>gb|AF096372.1|T5H22 Arabidopsis thaliana BAC T5H22 Length = 69752 Score = 48.1 bits (24), Expect = 0.049 Identities = 24/24 (100%) Strand = Plus / Minus Query: 170 tctctccaaggacatggaaactag 193 |||||||||||||||||||||||| Sbjct: 64957 tctctccaaggacatggaaactag 64934 Score = 44.1 bits (22), Expect = 0.77 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactagc 194 |||||||||||||||||||||| Sbjct: 51480 ctccaaggacatggaaactagc 51459 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 24225 ctccaaggacatggaaactag 24205 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 28092 ctccaaggacatggaaactag 28072 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 30041 ctccaaggacatggaaactag 30021 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 31998 ctccaaggacatggaaactag 31978 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 33958 ctccaaggacatggaaactag 33938 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 35895 ctccaaggacatggaaactag 35875 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 37844 ctccaaggacatggaaactag 37824 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 39792 ctccaaggacatggaaactag 39772 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 41740 ctccaaggacatggaaactag 41720 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 43689 ctccaaggacatggaaactag 43669 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 47585 ctccaaggacatggaaactag 47565 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctccaaggacatggaaactag 193 ||||||||||||||||||||| Sbjct: 49531 ctccaaggacatggaaactag 49511
>emb|CR724170.2|CNS0GLPS Tetraodon nigroviridis full-length cDNA Length = 1688 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 caccactgcgcagggcctctc 173 ||||||||||||||||||||| Sbjct: 1357 caccactgcgcagggcctctc 1337 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 130,154,315 Number of extensions: 6589061 Number of successful extensions: 115523 Number of sequences better than 10.0: 12 Number of HSP's gapped: 115520 Number of HSP's successfully gapped: 47 Length of query: 807 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 785 Effective length of database: 18,508,616,841 Effective search space: 14529264220185 Effective search space used: 14529264220185 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
