| Clone Name | FLbaf111g13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001053193.1| Oryza sativa (japonica cultivar-group) Os02g0313700 (Os02g0313700) mRNA, complete cds Length = 2555 Score = 208 bits (105), Expect = 4e-50 Identities = 237/281 (84%) Strand = Plus / Plus Query: 39 caatcttctttctcttcaagttcgagacaaggaccacatctttgatgacccacttggaaa 98 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||| |||| || | Sbjct: 1161 caatcttctctctcttcaagttcgagataaggatcccatctttgacgacacactcggtga 1220 Query: 99 ctgttcaatcagcatcaacaagctgagaggaggacaaagacacgatatgtggattccact 158 |||||| || ||||||||||| ||||||| |||||||| ||||| || |||||| | || Sbjct: 1221 ctgttccataagcatcaacaaattgagaggtggacaaaggcacgacatatggattgctct 1280 Query: 159 aaagcatataaagacagggagggttcatatagctgtgacggtacttgaagatgaaaacgg 218 ||| |||||||||||||| || |||||||||| || || ||||||||||||||||| | Sbjct: 1281 gaagaatataaagacagggcggattcatatagcagtaacagtacttgaagatgaaaatga 1340 Query: 219 aaaggtacctagcgacgaagatgaagtgtgtggaacacccaaggaggggaaagctagcac 278 |||||| || | ||| || ||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 1341 aaaggttccaaacgatgacgatgagcagtgtggaacacccaaggggggtaaagcaagcac 1400 Query: 279 accaagttctagtttttcttccaggaccaacaccgaaagtg 319 |||||| ||||| ||||| ||||||||||||| ||||||| Sbjct: 1401 accaaggtctagcttttcgtccaggaccaacaatgaaagtg 1441 Score = 69.9 bits (35), Expect = 2e-08 Identities = 82/97 (84%), Gaps = 3/97 (3%) Strand = Plus / Plus Query: 851 tgaggaagaaggcggcgcacatggtgaaacacgcgggg---aaagccgctcataacctga 907 ||||||||||||| | ||||||||||||||| |||||| ||| | |||||||| |||| Sbjct: 1946 tgaggaagaaggctgtgcacatggtgaaacatgcggggaacaaaacagctcataatctga 2005 Query: 908 agagcatgctcagcaggaagggccttgacaagggcaa 944 ||| |||| |||||||||| ||| ||||||| |||| Sbjct: 2006 agaacatgttcagcaggaaaggcagtgacaagagcaa 2042 Score = 60.0 bits (30), Expect = 2e-05 Identities = 111/138 (80%) Strand = Plus / Plus Query: 351 tgaatatgaacctgtggacatcaaaggactggaaaaggctggtgtctgggtacaccggcc 410 ||||||||| || || ||||| ||||||||||||||| || ||| ||||| || ||||| Sbjct: 1473 tgaatatgagccagtagacattgaaggactggaaaaggttgatgtttgggtccatcggcc 1532 Query: 411 gggcagcgacgtcgccgctacctgggagcctcggaaggggcgagcgcggtgccaggactc 470 ||||| || ||||| | || |||||||||||||| || || ||| |||| ||||| || Sbjct: 1533 aggcagtgatgtcgcagtcacttgggagcctcggaaaggacgtgcgaggtgtcaggattc 1592 Query: 471 ccaaatactacgggagaa 488 | ||| ||||| ||||| Sbjct: 1593 cagaatcctacgagagaa 1610
>dbj|AK072366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063O05, full insert sequence Length = 3224 Score = 208 bits (105), Expect = 4e-50 Identities = 237/281 (84%) Strand = Plus / Plus Query: 39 caatcttctttctcttcaagttcgagacaaggaccacatctttgatgacccacttggaaa 98 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||| |||| || | Sbjct: 2739 caatcttctctctcttcaagttcgagataaggatcccatctttgacgacacactcggtga 2798 Query: 99 ctgttcaatcagcatcaacaagctgagaggaggacaaagacacgatatgtggattccact 158 |||||| || ||||||||||| ||||||| |||||||| ||||| || |||||| | || Sbjct: 2799 ctgttccataagcatcaacaaattgagaggtggacaaaggcacgacatatggattgctct 2858 Query: 159 aaagcatataaagacagggagggttcatatagctgtgacggtacttgaagatgaaaacgg 218 ||| |||||||||||||| || |||||||||| || || ||||||||||||||||| | Sbjct: 2859 gaagaatataaagacagggcggattcatatagcagtaacagtacttgaagatgaaaatga 2918 Query: 219 aaaggtacctagcgacgaagatgaagtgtgtggaacacccaaggaggggaaagctagcac 278 |||||| || | ||| || ||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 2919 aaaggttccaaacgatgacgatgagcagtgtggaacacccaaggggggtaaagcaagcac 2978 Query: 279 accaagttctagtttttcttccaggaccaacaccgaaagtg 319 |||||| ||||| ||||| ||||||||||||| ||||||| Sbjct: 2979 accaaggtctagcttttcgtccaggaccaacaatgaaagtg 3019 Score = 60.0 bits (30), Expect = 2e-05 Identities = 111/138 (80%) Strand = Plus / Plus Query: 351 tgaatatgaacctgtggacatcaaaggactggaaaaggctggtgtctgggtacaccggcc 410 ||||||||| || || ||||| ||||||||||||||| || ||| ||||| || ||||| Sbjct: 3051 tgaatatgagccagtagacattgaaggactggaaaaggttgatgtttgggtccatcggcc 3110 Query: 411 gggcagcgacgtcgccgctacctgggagcctcggaaggggcgagcgcggtgccaggactc 470 ||||| || ||||| | || |||||||||||||| || || ||| |||| ||||| || Sbjct: 3111 aggcagtgatgtcgcagtcacttgggagcctcggaaaggacgtgcgaggtgtcaggattc 3170 Query: 471 ccaaatactacgggagaa 488 | ||| ||||| ||||| Sbjct: 3171 cagaatcctacgagagaa 3188
>dbj|AK101258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032H14, full insert sequence Length = 2557 Score = 200 bits (101), Expect = 1e-47 Identities = 236/281 (83%) Strand = Plus / Plus Query: 39 caatcttctttctcttcaagttcgagacaaggaccacatctttgatgacccacttggaaa 98 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||| |||| || | Sbjct: 1163 caatcttctctctcttcaagttcgagataaggatcccatctttgacgacacactcggtga 1222 Query: 99 ctgttcaatcagcatcaacaagctgagaggaggacaaagacacgatatgtggattccact 158 |||||| || ||||||||||| ||||||| ||||||| ||||| || |||||| | || Sbjct: 1223 ctgttccataagcatcaacaaattgagaggtagacaaaggcacgacatatggattgctct 1282 Query: 159 aaagcatataaagacagggagggttcatatagctgtgacggtacttgaagatgaaaacgg 218 ||| |||||||||||||| || |||||||||| || || ||||||||||||||||| | Sbjct: 1283 gaagaatataaagacagggcggattcatatagcagtaacagtacttgaagatgaaaatga 1342 Query: 219 aaaggtacctagcgacgaagatgaagtgtgtggaacacccaaggaggggaaagctagcac 278 |||||| || | ||| || ||||| ||||||||||||||||| ||| ||||| ||||| Sbjct: 1343 aaaggttccaaacgatgacgatgagcagtgtggaacacccaaggggggtaaagcaagcac 1402 Query: 279 accaagttctagtttttcttccaggaccaacaccgaaagtg 319 |||||| ||||| ||||| ||||||||||||| ||||||| Sbjct: 1403 accaaggtctagcttttcgtccaggaccaacaatgaaagtg 1443 Score = 69.9 bits (35), Expect = 2e-08 Identities = 82/97 (84%), Gaps = 3/97 (3%) Strand = Plus / Plus Query: 851 tgaggaagaaggcggcgcacatggtgaaacacgcgggg---aaagccgctcataacctga 907 ||||||||||||| | ||||||||||||||| |||||| ||| | |||||||| |||| Sbjct: 1948 tgaggaagaaggctgtgcacatggtgaaacatgcggggaacaaaacagctcataatctga 2007 Query: 908 agagcatgctcagcaggaagggccttgacaagggcaa 944 ||| |||| |||||||||| ||| ||||||| |||| Sbjct: 2008 agaacatgttcagcaggaaaggcagtgacaagagcaa 2044 Score = 60.0 bits (30), Expect = 2e-05 Identities = 111/138 (80%) Strand = Plus / Plus Query: 351 tgaatatgaacctgtggacatcaaaggactggaaaaggctggtgtctgggtacaccggcc 410 ||||||||| || || ||||| ||||||||||||||| || ||| ||||| || ||||| Sbjct: 1475 tgaatatgagccagtagacattgaaggactggaaaaggttgatgtttgggtccatcggcc 1534 Query: 411 gggcagcgacgtcgccgctacctgggagcctcggaaggggcgagcgcggtgccaggactc 470 ||||| || ||||| | || |||||||||||||| || || ||| |||| ||||| || Sbjct: 1535 aggcagtgatgtcgcagtcacttgggagcctcggaaaggacgtgcgaggtgtcaggattc 1594 Query: 471 ccaaatactacgggagaa 488 | ||| ||||| ||||| Sbjct: 1595 cagaatcctacgagagaa 1612
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 101 bits (51), Expect = 7e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 98 actgttcaatcagcatcaacaagctgagaggaggacaaagacacgatatgtggattccac 157 ||||||| || ||||||||||| ||||||| |||||||| ||||| || |||||| | | Sbjct: 12398817 actgttccataagcatcaacaaattgagaggtggacaaaggcacgacatatggattgctc 12398758 Query: 158 taaagcatataaagacagggagggttcatatagctgtgacggtacttgaagatgaaaacg 217 | ||| |||||||||||||| || |||||||||| || || ||||||||||||||||| | Sbjct: 12398757 tgaagaatataaagacagggcggattcatatagcagtaacagtacttgaagatgaaaatg 12398698 Query: 218 gaaaggt 224 |||||| Sbjct: 12398697 aaaaggt 12398691 Score = 83.8 bits (42), Expect = 2e-12 Identities = 66/74 (89%) Strand = Plus / Minus Query: 246 gtgtggaacacccaaggaggggaaagctagcacaccaagttctagtttttcttccaggac 305 ||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||||| Sbjct: 12398429 gtgtggaacacccaaggggggtaaagcaagcacaccaaggtctagcttttcgtccaggac 12398370 Query: 306 caacaccgaaagtg 319 ||||| ||||||| Sbjct: 12398369 caacaatgaaagtg 12398356 Score = 69.9 bits (35), Expect = 2e-08 Identities = 82/97 (84%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 851 tgaggaagaaggcggcgcacatggtgaaacacgcgggg---aaagccgctcataacctga 907 ||||||||||||| | ||||||||||||||| |||||| ||| | |||||||| |||| Sbjct: 12397851 tgaggaagaaggctgtgcacatggtgaaacatgcggggaacaaaacagctcataatctga 12397792 Query: 908 agagcatgctcagcaggaagggccttgacaagggcaa 944 ||| |||| |||||||||| ||| ||||||| |||| Sbjct: 12397791 agaacatgttcagcaggaaaggcagtgacaagagcaa 12397755 Score = 60.0 bits (30), Expect = 2e-05 Identities = 111/138 (80%) Strand = Plus / Minus Query: 351 tgaatatgaacctgtggacatcaaaggactggaaaaggctggtgtctgggtacaccggcc 410 ||||||||| || || ||||| ||||||||||||||| || ||| ||||| || ||||| Sbjct: 12398324 tgaatatgagccagtagacattgaaggactggaaaaggttgatgtttgggtccatcggcc 12398265 Query: 411 gggcagcgacgtcgccgctacctgggagcctcggaaggggcgagcgcggtgccaggactc 470 ||||| || ||||| | || |||||||||||||| || || ||| |||| ||||| || Sbjct: 12398264 aggcagtgatgtcgcagtcacttgggagcctcggaaaggacgtgcgaggtgtcaggattc 12398205 Query: 471 ccaaatactacgggagaa 488 | ||| ||||| ||||| Sbjct: 12398204 cagaatcctacgagagaa 12398187 Score = 60.0 bits (30), Expect = 2e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 39 caatcttctttctcttcaagttcgagacaaggaccacatctttgatgacccact 92 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||| |||| Sbjct: 12399027 caatcttctctctcttcaagttcgagataaggatcccatctttgacgacacact 12398974
>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0705A04 Length = 182468 Score = 101 bits (51), Expect = 7e-18 Identities = 108/127 (85%) Strand = Plus / Minus Query: 98 actgttcaatcagcatcaacaagctgagaggaggacaaagacacgatatgtggattccac 157 ||||||| || ||||||||||| ||||||| |||||||| ||||| || |||||| | | Sbjct: 78954 actgttccataagcatcaacaaattgagaggtggacaaaggcacgacatatggattgctc 78895 Query: 158 taaagcatataaagacagggagggttcatatagctgtgacggtacttgaagatgaaaacg 217 | ||| |||||||||||||| || |||||||||| || || ||||||||||||||||| | Sbjct: 78894 tgaagaatataaagacagggcggattcatatagcagtaacagtacttgaagatgaaaatg 78835 Query: 218 gaaaggt 224 |||||| Sbjct: 78834 aaaaggt 78828 Score = 83.8 bits (42), Expect = 2e-12 Identities = 66/74 (89%) Strand = Plus / Minus Query: 246 gtgtggaacacccaaggaggggaaagctagcacaccaagttctagtttttcttccaggac 305 ||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |||||||| Sbjct: 78566 gtgtggaacacccaaggggggtaaagcaagcacaccaaggtctagcttttcgtccaggac 78507 Query: 306 caacaccgaaagtg 319 ||||| ||||||| Sbjct: 78506 caacaatgaaagtg 78493 Score = 69.9 bits (35), Expect = 2e-08 Identities = 82/97 (84%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 851 tgaggaagaaggcggcgcacatggtgaaacacgcgggg---aaagccgctcataacctga 907 ||||||||||||| | ||||||||||||||| |||||| ||| | |||||||| |||| Sbjct: 77988 tgaggaagaaggctgtgcacatggtgaaacatgcggggaacaaaacagctcataatctga 77929 Query: 908 agagcatgctcagcaggaagggccttgacaagggcaa 944 ||| |||| |||||||||| ||| ||||||| |||| Sbjct: 77928 agaacatgttcagcaggaaaggcagtgacaagagcaa 77892 Score = 60.0 bits (30), Expect = 2e-05 Identities = 111/138 (80%) Strand = Plus / Minus Query: 351 tgaatatgaacctgtggacatcaaaggactggaaaaggctggtgtctgggtacaccggcc 410 ||||||||| || || ||||| ||||||||||||||| || ||| ||||| || ||||| Sbjct: 78461 tgaatatgagccagtagacattgaaggactggaaaaggttgatgtttgggtccatcggcc 78402 Query: 411 gggcagcgacgtcgccgctacctgggagcctcggaaggggcgagcgcggtgccaggactc 470 ||||| || ||||| | || |||||||||||||| || || ||| |||| ||||| || Sbjct: 78401 aggcagtgatgtcgcagtcacttgggagcctcggaaaggacgtgcgaggtgtcaggattc 78342 Query: 471 ccaaatactacgggagaa 488 | ||| ||||| ||||| Sbjct: 78341 cagaatcctacgagagaa 78324 Score = 60.0 bits (30), Expect = 2e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 39 caatcttctttctcttcaagttcgagacaaggaccacatctttgatgacccact 92 ||||||||| ||||||||||||||||| ||||| | ||||||||| ||| |||| Sbjct: 79164 caatcttctctctcttcaagttcgagataaggatcccatctttgacgacacact 79111
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Minus Query: 969 ggaggaagacgatctcgatgcgg 991 ||||||||||||||||||||||| Sbjct: 2281594 ggaggaagacgatctcgatgcgg 2281572
>emb|CT025671.10| Mouse DNA sequence from clone RP24-358N22 on chromosome 17, complete sequence Length = 114374 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaagg 928 ||||||||||||||||||||||| Sbjct: 8632 gaagagcatgctcagcaggaagg 8654
>gb|AC119957.9| Mus musculus chromosome 17, clone RP24-466G23, complete sequence Length = 153209 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Minus Query: 906 gaagagcatgctcagcaggaagg 928 ||||||||||||||||||||||| Sbjct: 176 gaagagcatgctcagcaggaagg 154
>gb|AC007200.1| Homo sapiens chromosome 5 Bac clone CTB-54K3, complete sequence Length = 99670 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1337 tgcgtaaaatgaaaatatatatg 1359 ||||||||||||||||||||||| Sbjct: 70580 tgcgtaaaatgaaaatatatatg 70558
>gb|AC140770.1| Homo sapiens chromosome 5 clone RP11-78J4, complete sequence Length = 156513 Score = 46.1 bits (23), Expect = 0.34 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1337 tgcgtaaaatgaaaatatatatg 1359 ||||||||||||||||||||||| Sbjct: 106697 tgcgtaaaatgaaaatatatatg 106719
>ref|XM_001070646.1| PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) (Ddx11_predicted), mRNA Length = 4831 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 1419 gaagagcatgctcagcaggaag 1440
>ref|XM_237570.4| PREDICTED: Rattus norvegicus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (predicted) (Ddx11_predicted), mRNA Length = 4912 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 1482 gaagagcatgctcagcaggaag 1503
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 408 gccgggcagcgacgtcgccgct 429 |||||||||||||||||||||| Sbjct: 2627643 gccgggcagcgacgtcgccgct 2627664
>gb|BC049929.1| Mus musculus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae), mRNA (cDNA clone IMAGE:5309846), partial cds Length = 1971 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 104 gaagagcatgctcagcaggaag 125
>ref|NM_001003919.1| Mus musculus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) (Ddx11), mRNA gb|BC079656.1| Mus musculus DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae), mRNA (cDNA clone MGC:90809 IMAGE:6854039), complete cds Length = 4167 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 1590 gaagagcatgctcagcaggaag 1611
>dbj|AK152868.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830087P18 product:similar to DDX11 protein [Homo sapiens], full insert sequence Length = 3420 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 1578 gaagagcatgctcagcaggaag 1599
>dbj|AK049419.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430005N23 product:similar to CHL1 POTENTIAL HELICASE [Homo sapiens], full insert sequence Length = 3523 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 1596 gaagagcatgctcagcaggaag 1617
>dbj|AK076357.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732462I11 product:weakly similar to HELICASE [Homo sapiens], full insert sequence Length = 4486 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 906 gaagagcatgctcagcaggaag 927 |||||||||||||||||||||| Sbjct: 1620 gaagagcatgctcagcaggaag 1641
>ref|XM_001026984.1| Tetrahymena thermophila SB210 Beige/BEACH domain containing protein (TTHERM_00688820) mRNA, complete cds Length = 10635 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 cttctttctcttcaagttcga 63 ||||||||||||||||||||| Sbjct: 9412 cttctttctcttcaagttcga 9392
>ref|XM_001197759.1| PREDICTED: Strongylocentrotus purpuratus similar to 13S condensin XCAP-D2 subunit (LOC757264), partial mRNA Length = 1847 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 962 acgaggaggaggaagacgatc 982 ||||||||||||||||||||| Sbjct: 1501 acgaggaggaggaagacgatc 1521
>ref|XM_001196394.1| PREDICTED: Strongylocentrotus purpuratus similar to 13S condensin XCAP-D2 subunit (LOC765457), partial mRNA Length = 1847 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 962 acgaggaggaggaagacgatc 982 ||||||||||||||||||||| Sbjct: 1501 acgaggaggaggaagacgatc 1521
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 aagaacgcgagcgacgacgaa 672 ||||||||||||||||||||| Sbjct: 728409 aagaacgcgagcgacgacgaa 728429
>emb|AM260479.1| Ralstonia eutropha H16 chromosome 1 Length = 4052032 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 caagaacgcgagcgacgacga 671 ||||||||||||||||||||| Sbjct: 3342626 caagaacgcgagcgacgacga 3342606
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 caagaacgcgagcgacgacga 671 ||||||||||||||||||||| Sbjct: 2837833 caagaacgcgagcgacgacga 2837813
>gb|DQ493943.1| Magnaporthe grisea 70-15 clone 72H05 telomere region, partial sequence Length = 45496 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 956 ggagaaacgaggaggaggaagacga 980 ||||| ||||||||||||||||||| Sbjct: 25540 ggagagacgaggaggaggaagacga 25516
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 caagaacgcgagcgacgacga 671 ||||||||||||||||||||| Sbjct: 3176368 caagaacgcgagcgacgacga 3176348
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 aagaacgcgagcgacgacgaa 672 ||||||||||||||||||||| Sbjct: 567370 aagaacgcgagcgacgacgaa 567390
>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence Length = 221662 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 cgggagaacgacggctgcagc 501 ||||||||||||||||||||| Sbjct: 192038 cgggagaacgacggctgcagc 192018
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 652 aagaacgcgagcgacgacgaa 672 ||||||||||||||||||||| Sbjct: 2421859 aagaacgcgagcgacgacgaa 2421839
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 652 aagaacgcgagcgacgacgaa 672 ||||||||||||||||||||| Sbjct: 3637005 aagaacgcgagcgacgacgaa 3636985
>gb|AC127337.4| Mus musculus BAC clone RP23-168F21 from 12, complete sequence Length = 209066 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 cgggagaacgacggctgcagc 501 ||||||||||||||||||||| Sbjct: 22066 cgggagaacgacggctgcagc 22046
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 caagaacgcgagcgacgacga 671 ||||||||||||||||||||| Sbjct: 3053981 caagaacgcgagcgacgacga 3053961
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 tccaatcttctttctcttcaagttc 61 ||||||||||||||| ||||||||| Sbjct: 19408 tccaatcttctttctgttcaagttc 19384
>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene, complete cds Length = 147386 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 632 tgcgccacaacaagaactcca 652 ||||||||||||||||||||| Sbjct: 121772 tgcgccacaacaagaactcca 121792
>ref|NM_001008423.1| Mus musculus gene model 1568, (NCBI) (Gm1568), mRNA gb|BC067044.1| Mus musculus gene model 1568, (NCBI), mRNA (cDNA clone MGC:91363 IMAGE:30531780), complete cds Length = 4032 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 cgggagaacgacggctgcagc 501 ||||||||||||||||||||| Sbjct: 2088 cgggagaacgacggctgcagc 2108
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 37 tccaatcttctttctcttcaagttc 61 ||||||||||||||| ||||||||| Sbjct: 27068 tccaatcttctttctgttcaagttc 27092
>dbj|AK147473.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1049E04 product:hypothetical Glutamic acid-rich region profile/Arginine-rich region profile/Serine-rich region profile containing protein, full insert sequence Length = 5628 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 cgggagaacgacggctgcagc 501 ||||||||||||||||||||| Sbjct: 1943 cgggagaacgacggctgcagc 1963
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12 Length = 306250 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 916 ctcagcaggaagggccttgac 936 ||||||||||||||||||||| Sbjct: 242316 ctcagcaggaagggccttgac 242336
>emb|CR956382.7| Pig DNA sequence from clone CH242-231E9 on chromosome 6, complete sequence Length = 186091 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 632 tgcgccacaacaagaactccaagaa 656 |||||||| |||||||||||||||| Sbjct: 112295 tgcgccactacaagaactccaagaa 112319
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 37 tccaatcttctttctcttcaagttc 61 ||||||||||||||| ||||||||| Sbjct: 11110474 tccaatcttctttctgttcaagttc 11110498
>dbj|AB197125.1| Burkholderia multivorans genes for GrpE, putative thioredoxin, DnaK, DnaJ, para-aminobenzoate synthetase component, complete and partial cds Length = 5596 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 652 aagaacgcgagcgacgacgaa 672 ||||||||||||||||||||| Sbjct: 3598 aagaacgcgagcgacgacgaa 3618
>emb|Z73967.1|HS315B17 Human DNA sequence from clone RP1-315B17 on chromosome Xq22.2-22.3, complete sequence Length = 53185 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 atccaatcttctttctcttca 56 ||||||||||||||||||||| Sbjct: 21409 atccaatcttctttctcttca 21429
>emb|AL392185.10| Human DNA sequence from clone RP11-332M4 on chromosome 9 Contain a novel gene, complete sequence Length = 69582 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 159 aaagcatataaagacagggagggtt 183 |||| |||||||||||||||||||| Sbjct: 22945 aaaggatataaagacagggagggtt 22921
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 5.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 652 aagaacgcgagcgacgacgaa 672 ||||||||||||||||||||| Sbjct: 3379713 aagaacgcgagcgacgacgaa 3379693
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 42.1 bits (21), Expect = 5.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 435 ggagcctcggaaggggcgagcgcgg 459 |||||||||||||| |||||||||| Sbjct: 243366 ggagcctcggaaggcgcgagcgcgg 243390 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 233,037,908 Number of extensions: 13403279 Number of successful extensions: 308260 Number of sequences better than 10.0: 45 Number of HSP's gapped: 308260 Number of HSP's successfully gapped: 58 Length of query: 1385 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1362 Effective length of database: 18,503,978,556 Effective search space: 25202418793272 Effective search space used: 25202418793272 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)