ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf108k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK102859:Os08g0528700 30 1.3
2Os10g0171400:Os10g0171400 28 3.8
3Os01g0819400:Os01g0819400 28 6.6
4Os01g0303300:Os01g0303300 28 6.6
5AK101592:Os11g0175500 28 6.6
6AK064320:Os11g0175500 28 6.6

>AK102859:Os08g0528700 |
          Length = 187
 Score = 30.0 bits (66), Expect = 1.3
 Identities = 33/93 (35%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
 Frame = +3

Query: 42  SSPPLKVVYSPSS----HPPRELRRSPAHIHGRGGRE*WHMHAHVSWRVRKGLFSAPPFM 209
           S PP +   SPSS     P R   RS    HG          A  S        SA P  
Sbjct: 62  SPPPSRTRCSPSSPGSASPARTSPRSSPPSHGSSAPR---RPASPSASPPSATASACPTP 118

Query: 210 RPTPAS-------RRSWTARWPLGSSRRMPLWD 287
           R +PAS       R S  A WP GSS   P WD
Sbjct: 119 R-SPASSSCPAAPRASTHATWPRGSSSGSPSWD 150



to top

>Os10g0171400:Os10g0171400 |
          Length = 179

 Score = 28.5 bits (62), Expect = 3.8
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 54  LKVVYSPSSHPPRE-LRRSPAHIHGRGGRE*WHMHAH 161
           ++ V + S+   RE L+R+ A I GRGG + WH   H
Sbjct: 73  VRAVVAMSADAAREILQRNNADITGRGGMDSWHACGH 109



to top

>Os01g0819400:Os01g0819400 |
          Length = 368

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 174 VRKGLFSAPPFMRPTPASRRSWTARWPLGSSRRMP 278
           V +G  S PP  RP P    SW    P  S R +P
Sbjct: 274 VVEGCLSVPPLDRPLPLRPASWPLVPPAKSPRDLP 308



to top

>Os01g0303300:Os01g0303300 |
          Length = 263

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 24/90 (26%), Positives = 38/90 (42%)
 Frame = +3

Query: 30  PSYFSSPPLKVVYSPSSHPPRELRRSPAHIHGRGGRE*WHMHAHVSWRVRKGLFSAPPFM 209
           P++ +  P  +  +P   PP  L RSP H      R   H+ A +  RVR+         
Sbjct: 41  PTHVALLPRPLYTNPRQPPPSRLHRSPPHPPPPPLRR-THVAARLVERVRR--------- 90

Query: 210 RPTPASRRSWTARWPLGSSRRMPLWDYGGP 299
           R + +   +WT +  + S  +  L D G P
Sbjct: 91  RMSSSRLDTWTLKEEVASMDKRWLVDLGHP 120



to top

>AK101592:Os11g0175500 |
          Length = 478

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 274 CPCGTTAVQDVPGRGRNNSTHNNIDRWIQAFMGWARS 384
           CP   TAVQ V   GRN+  HN  +  +QAF    RS
Sbjct: 189 CPQCRTAVQSV---GRNHFLHNIEEAILQAFSSLQRS 222



to top

>AK064320:Os11g0175500 |
          Length = 508

 Score = 27.7 bits (60), Expect = 6.6
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +1

Query: 274 CPCGTTAVQDVPGRGRNNSTHNNIDRWIQAFMGWARS 384
           CP   TAVQ V   GRN+  HN  +  +QAF    RS
Sbjct: 189 CPQCRTAVQSV---GRNHFLHNIEEAILQAFSSLQRS 222


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 19,707,395
Number of extensions: 497810
Number of successful extensions: 1550
Number of sequences better than 10.0: 6
Number of HSP's gapped: 1548
Number of HSP's successfully gapped: 6
Length of query: 210
Length of database: 15,399,855
Length adjustment: 96
Effective length of query: 114
Effective length of database: 11,555,919
Effective search space: 1317374766
Effective search space used: 1317374766
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top