ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf105d17 |
|---|---|
| Clone Library Name | barley_pub |
>Q99J62:RFC4_MOUSE Replication factor C subunit 4 - Mus musculus (Mouse)| Length = 364 Score = 352 bits (904), Expect = 2e-96 Identities = 177/322 (54%), Positives = 227/322 (70%), Gaps = 1/322 (0%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+ V +VA Q+EVV VL +LE ADLP++LFYGPPGTGKT+T LA A +L+GP Sbjct: 39 PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 EL++ RVLELNASDERGI VVR K+K+FA + V +R G PCPP+KI+ILDEADSMT Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSA 158 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+ + R+L I +E Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKE 218 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLF-GXXXXXXXXXXXXGAIPDDTVKSLL 904 + + ++ L IS+GDLR+AIT+LQSA RL G G IP T+ + Sbjct: 219 NVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIF 278 Query: 905 VACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 AC SG FD V N+I +G+ +QL++Q D I+ +++ D+HK+ I KL E DKC Sbjct: 279 TACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKC 338 Query: 1085 LVDGADEYLQLLDMASETIRAL 1150 L DGADE+LQL+ + + ++ L Sbjct: 339 LADGADEHLQLMSLCATVMQQL 360
>P35249:RFC4_HUMAN Replication factor C subunit 4 - Homo sapiens (Human)| Length = 363 Score = 346 bits (887), Expect = 2e-94 Identities = 175/322 (54%), Positives = 228/322 (70%), Gaps = 1/322 (0%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+ V +VA QEEVV VL +LE ADLP++LFYGPPGTGKT+T LA A +L+GP Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 EL++ RVLELNASDERGI VVR K+K+FA + V +R G PCPP+KI+ILDEADSMT Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSA 158 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+ + R+L I +E Sbjct: 159 AQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKE 218 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLF-GXXXXXXXXXXXXGAIPDDTVKSLL 904 + + ++ L +S+GDLR+AIT+LQSA RL G G IP + + + Sbjct: 219 NVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVF 278 Query: 905 VACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 AC+SG FD V ++I +G+ +QL++Q DV+V +++ D+ K+ I KL E DKC Sbjct: 279 AACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKC 337 Query: 1085 LVDGADEYLQLLDMASETIRAL 1150 L DGADE+LQL+ + + ++ L Sbjct: 338 LADGADEHLQLISLCATVMQQL 359
>Q09843:RFC2_SCHPO Replication factor C subunit 2 - Schizosaccharomyces pombe (Fission| yeast) Length = 340 Score = 304 bits (779), Expect = 6e-82 Identities = 158/318 (49%), Positives = 218/318 (68%), Gaps = 1/318 (0%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 361 S PWVE YRP+ + V+ QE V+VL TL + +LPHMLFYG PGTGKT+T LA++ +L+ Sbjct: 18 SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELF 77 Query: 362 GPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMT 541 GP+L K+RVLELNASDERGI+++R K+K FA V + + GYPCPP+KIIILDEADSMT Sbjct: 78 GPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN-KVDGYPCPPFKIIILDEADSMT 136 Query: 542 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICS 721 +DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+RFKPL + M R+ I + Sbjct: 137 QDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAA 196 Query: 722 EEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLF-GXXXXXXXXXXXXGAIPDDTVKS 898 ++ ++++ ++ L S GD+R+AIT+LQSAA L G GA+P + ++S Sbjct: 197 DQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRS 256 Query: 899 LLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEAD 1078 LL + ++ A+GY +LSQ DV++ + + K +I KL E D Sbjct: 257 LLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVD 316 Query: 1079 KCLVDGADEYLQLLDMAS 1132 K L DGADE LQLLD+ S Sbjct: 317 KRLNDGADETLQLLDLLS 334
>P40348:RFC2_YEAST Replication factor C subunit 2 - Saccharomyces cerevisiae (Baker's| yeast) Length = 353 Score = 298 bits (762), Expect = 5e-80 Identities = 157/322 (48%), Positives = 209/322 (64%), Gaps = 8/322 (2%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYG 364 QPWVEKYRP+ + +V Q+ V VL TL++A+LPHMLFYGPPGTGKT+T LA+ +LYG Sbjct: 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKG---GYPCPPYKIIILDEADS 535 P+L K+R+LELNASDERGI++VR K+K+FA + V K YPCPPYKIIILDEADS Sbjct: 85 PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 144 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHI 715 MT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L +R+ I Sbjct: 145 MTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFI 204 Query: 716 CSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLF-----GXXXXXXXXXXXXGAIP 880 +E + D L + IS GDLRR IT LQSA++ G G +P Sbjct: 205 SEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP 264 Query: 881 DDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICR 1060 D + ++ KSG+FD K V+ + G+ + +++Q + + D+ K +I Sbjct: 265 HDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISW 324 Query: 1061 KLGEADKCLVDGADEYLQLLDM 1126 L D L +G +E++QLL++ Sbjct: 325 LLFTTDSRLNNGTNEHIQLLNL 346
>O28219:RFCS_ARCFU Replication factor C small subunit - Archaeoglobus fulgidus| Length = 319 Score = 242 bits (618), Expect = 3e-63 Identities = 140/311 (45%), Positives = 192/311 (61%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WVEKYRPR + +V Q+EV++ L +E ++PH+LF GPPGTGKT TA+A+A L+G E Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-E 65 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 ++ +E+NASDERGI+VVR KIK+FA A +G A P+KII LDEAD++T D Sbjct: 66 NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGA--------PFKIIFLDEADALTAD 117 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ ++ M R+L IC +E Sbjct: 118 AQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE 177 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 G+ + L L IS GD R+AI LQ AA + A P++ + + Sbjct: 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQT 237 Query: 908 ACKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 A K G F A + + ++ + G +++Q I++ I D K ++ KLGE D Sbjct: 238 ALK-GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDFR 295 Query: 1085 LVDGADEYLQL 1117 L +GA+E +QL Sbjct: 296 LTEGANERIQL 306
>Q6M044:RFCS_METMP Replication factor C small subunit - Methanococcus maripaludis| Length = 315 Score = 234 bits (598), Expect = 6e-61 Identities = 129/313 (41%), Positives = 189/313 (60%), Gaps = 2/313 (0%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYG 364 +PWVEKYRP + +V E+++ LTN +E +PH+LF G PG GKTT ALA+A LYG Sbjct: 3 KPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYG 62 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMT 541 + ++ LELN+SDERGI+V+RTK+KDFA +G A P+K+I LDE+D++T Sbjct: 63 -DTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDA--------PFKVIFLDESDALT 113 Query: 542 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICS 721 DAQNALRRTME YS + RF CNY S+II P+ SRCA FRF PL + + + I Sbjct: 114 SDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISE 173 Query: 722 EEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSL 901 +E L L+ + + +S+GD+R+AI LQ+AA + A PD+ +K + Sbjct: 174 KENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDE-IKKM 232 Query: 902 LVACKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEAD 1078 +G+F A +++ N++ D G +L Q + N DI ++ K + +GE D Sbjct: 233 TQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNL-DISEKEKVHLVEAIGECD 291 Query: 1079 KCLVDGADEYLQL 1117 +V+G++E +QL Sbjct: 292 FRIVEGSNERIQL 304
>Q975D3:RFCS_SULTO Replication factor C small subunit - Sulfolobus tokodaii| Length = 327 Score = 232 bits (591), Expect = 4e-60 Identities = 126/311 (40%), Positives = 192/311 (61%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRPR + D+ +Q+++V L ++ ++PH+LF GPPGTGKTT ALA+ + LYG Sbjct: 9 WAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGDN 68 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 Y+ LELNASDERGI+V+R K+K+FA G P+K+++LDEAD+MT DA Sbjct: 69 -YRQYFLELNASDERGIDVIRNKVKEFARTVAGGN-------VPFKVVLLDEADNMTADA 120 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL ++ + R+ +I E Sbjct: 121 QQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEK 180 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 + D AL T+ I+QGD+R+AI LQ A+ ++G A P + ++ +++ Sbjct: 181 VEYDQKALETIYDITQGDMRKAINILQ-ASSVYGKVTVEAVYKVLGLAQPKE-IREMIML 238 Query: 911 CKSGEFDVANKEVSNIIAD-GYPVSQLLSQF-LDVIVNADDIPDEHKARICRKLGEADKC 1084 G F A +++ ++ + G ++ Q +V N +IPD+ K + +GE + Sbjct: 239 ALQGNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYR 298 Query: 1085 LVDGADEYLQL 1117 +++GAD+ +QL Sbjct: 299 IMEGADDEIQL 309
>Q8ZYK4:RFCS1_PYRAE Replication factor C small subunit 1 - Pyrobaculum aerophilum| Length = 329 Score = 229 bits (583), Expect = 3e-59 Identities = 132/311 (42%), Positives = 184/311 (59%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRPR +V EEV L ++ ++PH+LFYGPPGTGKTT AL +A +LYG E Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 ++ LELNASDERGINV+R ++K+FA A VG A P+K++ILDEAD+MT D Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA--------PFKLVILDEADNMTSD 116 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ I E Sbjct: 117 AQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNE 176 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 G+ L A++ + +S+GD+R+AI LQ AA P D ++ + Sbjct: 177 GVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNL 236 Query: 908 ACKSGEFDVANKEVSNII-ADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 A SG+F A +++ ++ G + + F ++ I D+ KA I L + D Sbjct: 237 AI-SGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRM-PIDDDIKAEIAELLADVDYR 294 Query: 1085 LVDGADEYLQL 1117 L GADE +QL Sbjct: 295 LTQGADEEIQL 305
>Q9YBS7:RFCS_AERPE Replication factor C small subunit - Aeropyrum pernix| Length = 325 Score = 228 bits (581), Expect = 5e-59 Identities = 134/311 (43%), Positives = 188/311 (60%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WVEKYRPR + D+ Q+ VV L ++ ++PH+LF GPPGTGKTT A A+A+ L+G E Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 Y+ +LELNASDERGINV+R K+K+FA R P P+KI++LDEAD+MT DA Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA-------RSRTPPEIPFKIVLLDEADNMTSDA 120 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS+ + R+ +I EG Sbjct: 121 QQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEG 180 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 + + AL + IS+GD+R+AI LQ+A+ L G A P + V+ +L Sbjct: 181 VDYEEEALDAIYEISEGDMRKAINVLQAASYL-GKVTVDAVYRVVGMAKPRE-VREMLAT 238 Query: 911 CKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNAD-DIPDEHKARICRKLGEADKC 1084 G+F A + I+ + G + Q + + + +P+E + LGE Sbjct: 239 ALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYR 298 Query: 1085 LVDGADEYLQL 1117 LV+G+D+ +QL Sbjct: 299 LVEGSDDDIQL 309
>A1RSA2:RFCS1_PYRIL Replication factor C small subunit 1 - Pyrobaculum islandicum (strain| DSM 4184 / JCM 9189) Length = 329 Score = 228 bits (580), Expect = 7e-59 Identities = 130/311 (41%), Positives = 184/311 (59%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRPR +V EEV L +++ ++PH+LFYGPPGTGKTT AL +A +LYG E Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 ++ LELNASDERGINV+R ++K+FA A VG A P+K++ILDEAD+MT D Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA--------PFKLVILDEADNMTSD 116 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRR ME Y++ TRF + NY+SRII+P+ SRCA FRF P+ +M+ R+ +I E Sbjct: 117 AQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSE 176 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 G+ + A+ + +S+GD+R+AI LQ AA P D V+ + Sbjct: 177 GVEVKEDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRPTDIVELFNL 236 Query: 908 ACKSGEFDVANKEVSNII-ADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 A SG++ A +++ ++ G + F ++ + DE KA + L + D Sbjct: 237 AL-SGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRM-SLDDETKAEVAELLADVDYR 294 Query: 1085 LVDGADEYLQL 1117 L GADE +QL Sbjct: 295 LTQGADEEIQL 305
>Q4JAB0:RFCS_SULAC Replication factor C small subunit - Sulfolobus acidocaldarius| Length = 325 Score = 224 bits (571), Expect = 7e-58 Identities = 125/311 (40%), Positives = 188/311 (60%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRP+ + ++ +Q+E+V L ++ ++PH+LF GPPGTGKTT ALA+ LYG Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 Y+ LELNASDERGI+V+R K+K+FA + P+K+I+LDEAD+MT DA Sbjct: 67 -YRQYFLELNASDERGIDVIRNKVKEFARTVASNN-------VPFKVILLDEADNMTADA 118 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL ++ + NR++ I E Sbjct: 119 QQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEK 178 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 + D + T+ I+QGD+R+AI +Q AA +G A P + ++ +L Sbjct: 179 VEFDPKGIETIFDITQGDMRKAINVIQ-AASAYGKITVETVYKVLGLAQPKE-IREMLHL 236 Query: 911 CKSGEFDVANKEVSNIIAD-GYPVSQLLSQ-FLDVIVNADDIPDEHKARICRKLGEADKC 1084 SG+F A ++ ++ + G ++ Q ++ N IPD+ K + GE + Sbjct: 237 ALSGKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFR 296 Query: 1085 LVDGADEYLQL 1117 +++GAD+ +QL Sbjct: 297 IMEGADDEIQL 307
>P53016:RFC4_CAEEL Replication factor C subunit 4 - Caenorhabditis elegans| Length = 334 Score = 224 bits (571), Expect = 7e-58 Identities = 132/324 (40%), Positives = 187/324 (57%), Gaps = 8/324 (2%) Frame = +2 Query: 176 PPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 P W EKYRP+ + D+A+Q+EVV +L L+ DLPH+LFYGPPGTGKT+ ALA Q Sbjct: 12 PKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQ 71 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 L+ ++ RVL+LNASDERGI VVR KI+ F+ ++G + + KIIILDE D+ Sbjct: 72 LFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHR--EDVLKLKIIILDEVDA 129 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHI 715 MT +AQ A+RR +E +SK TRF ICNY+SR+I P+ SRCAKFRFK L ++ R+ I Sbjct: 130 MTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTI 189 Query: 716 CSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVK 895 C EG + L + S+GDLRRA+ LQS A + G + Sbjct: 190 CDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNCYLRG-----SSD 244 Query: 896 SLLVA--CKSGEFDVANKEVSNIIADGYPVSQ------LLSQFLDVIVNADDIPDEHKAR 1051 SLL++ CKS + +V IIA +++ + + +++ D I DE+ Sbjct: 245 SLLISNVCKS----ILTADVPQIIALTKDITKSCTGVAFIRRCFQQLMDEDVINDENIGV 300 Query: 1052 ICRKLGEADKCLVDGADEYLQLLD 1123 + + + +K ++DG D LLD Sbjct: 301 MGKLVATCEKRILDGCDLENNLLD 324
>A1RWU7:RFCS_THEPD Replication factor C small subunit - Thermofilum pendens (strain Hrk| 5) Length = 325 Score = 223 bits (568), Expect = 2e-57 Identities = 130/320 (40%), Positives = 197/320 (61%), Gaps = 5/320 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WVEKYRPR + ++ QEE+V+ L ++ ++PH+LF GPPGTGKTT ALA+A+ LYG E Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYG-E 64 Query: 371 LYKARVLELNASDERGINVVRTKIKDFA-AVAVGSARKGGYPCPPYKIIILDEADSMTED 547 ++ LELNASDERGI+V+R++IKD+A + +G P+K++ILDEAD+MT D Sbjct: 65 SWRDNTLELNASDERGIDVIRSRIKDYARTLPIGDV--------PFKLVILDEADNMTGD 116 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME +S+ TRF I NY S+IIEP+ SRCA FRF+PL + R+ I +E Sbjct: 117 AQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQE 176 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 G+T+D AL + SQGDLR+AI LQ+A+ + G + V+ ++ Sbjct: 177 GITVDDGALEAIWEESQGDLRKAINTLQAASAI-SRNVTEEVVYAALGRVKPKEVREMIE 235 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQL-LSQFLDVIVNADD---IPDEHKARICRKLGEA 1075 + G A ++ ++ Y +S + + +F+ V + + D A + +GE Sbjct: 236 SALKGNLLEARDKL-RLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGET 294 Query: 1076 DKCLVDGADEYLQLLDMASE 1135 + +V+G+D+ +QL+ + S+ Sbjct: 295 NYRIVEGSDDEIQLMALLSK 314
>Q8TSX5:RFCS_METAC Replication factor C small subunit - Methanosarcina acetivorans| Length = 338 Score = 223 bits (567), Expect = 2e-57 Identities = 123/319 (38%), Positives = 191/319 (59%), Gaps = 10/319 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRP ++ VA Q+E + L + + T +LPH+LF GPPG GKT +A++IA +++G + Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 L++ ELNASDERGI++VR KIK+FA A +G A P+KII LDEAD++T D Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIGGA--------PFKIIFLDEADALTAD 126 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS++ + R+ +I ++ Sbjct: 127 AQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQ 186 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPD-DTVKSLL 904 GL++ L ++QGD+R+A+ LQ+AA + A + + +K+L+ Sbjct: 187 GLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLI 246 Query: 905 VACKSGEFDVANKEVSNII-ADGYPVSQLLSQFLDVIVNADD-------IPDEHKARICR 1060 G F +A KE++ ++ +G ++ Q V+ D+ + + + Sbjct: 247 ETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVD 306 Query: 1061 KLGEADKCLVDGADEYLQL 1117 +GE D L +GA E +QL Sbjct: 307 VIGETDFRLTEGASEKIQL 325
>Q46C63:RFCS_METBF Replication factor C small subunit - Methanosarcina barkeri (strain| Fusaro / DSM 804) Length = 334 Score = 221 bits (562), Expect = 8e-57 Identities = 129/320 (40%), Positives = 191/320 (59%), Gaps = 11/320 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRP ++ VA QEE + L + + T +LPH+LF GPPG GKT +A++IA +++G + Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 L++ ELNASDERGI+VVRTKIK+FA A +G A +KII LDEAD++T D Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGGAE--------FKIIFLDEADALTSD 122 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS++ + R+ +I ++ Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAI--PDDTVKSL 901 L++ L +SQGD+R+A+ LQ+AA + A P+D +++L Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPED-IRNL 241 Query: 902 LVACKSGEFDVANKEVSNII-ADGYPVSQLLSQFLDVIVNADD-------IPDEHKARIC 1057 + G F VA KE++ ++ +G ++ Q I D+ + ++ + Sbjct: 242 IETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELV 301 Query: 1058 RKLGEADKCLVDGADEYLQL 1117 +GE D L +GA E +QL Sbjct: 302 DIIGEIDFRLTEGATEKIQL 321
>Q9UXF5:RFCS_SULSO Replication factor C small subunit - Sulfolobus solfataricus| Length = 330 Score = 219 bits (559), Expect = 2e-56 Identities = 123/311 (39%), Positives = 186/311 (59%), Gaps = 2/311 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRP+ + D+ +Q E++ L ++ ++PH+LF GPPGTGKTT ALA+ + LYG Sbjct: 10 WAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDN 69 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 Y LELNASDERGI+V+R K+K+FA + P+K+++LDEAD+MT DA Sbjct: 70 -YTEYFLELNASDERGIDVIRNKVKEFARTVIPGDI-------PFKVVLLDEADNMTADA 121 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q ALRRTME Y++ TRF CNY+S+IIEP+ SR A FRF PL ++ + NR+++I E Sbjct: 122 QQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEK 181 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 D AL T+ I+ GD+R++I LQ AA +G A P + V+ ++ Sbjct: 182 AEYDQKALETIYDITMGDMRKSINILQ-AASAYGKISVEAVFKVLGLAQPKE-VREMINL 239 Query: 911 CKSGEFDVANKEVSN-IIADGYPVSQLLSQFLDVIVNAD-DIPDEHKARICRKLGEADKC 1084 G+F A ++ +I G ++ Q I +++ I +E + + +GE + Sbjct: 240 ALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFR 299 Query: 1085 LVDGADEYLQL 1117 +++GAD+ +QL Sbjct: 300 IIEGADDEIQL 310
>Q8PVY4:RFCS_METMA Replication factor C small subunit - Methanosarcina mazei| (Methanosarcina frisia) Length = 338 Score = 219 bits (558), Expect = 2e-56 Identities = 125/319 (39%), Positives = 189/319 (59%), Gaps = 10/319 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRP ++ VA QEE + L + + T +LPH+LF GPPG GKT +A++IA +++G + Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 L++ ELNASDERGI++VR KIK+FA A +G A P+KII LDEAD++T D Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMGGA--------PFKIIFLDEADALTSD 126 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ+ALRRTME +S RF CNY S+IIEP+ SRCA +RF+ LS+ + R+ +I E+ Sbjct: 127 AQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQ 186 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPD-DTVKSLL 904 L++ L ++QGD+R+A+ LQ+AA + A + + +K+L+ Sbjct: 187 DLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLI 246 Query: 905 VACKSGEFDVANKEVSNII-ADGYPVSQLLSQFLDVIVNADD-------IPDEHKARICR 1060 G F VA KE++ ++ +G ++ Q V+ D+ + + + Sbjct: 247 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVD 306 Query: 1061 KLGEADKCLVDGADEYLQL 1117 +GE D L +GA E +QL Sbjct: 307 IIGETDFRLTEGASEKIQL 325
>P34429:RFC5_CAEEL Putative replication factor C subunit 5 - Caenorhabditis elegans| Length = 368 Score = 219 bits (558), Expect = 2e-56 Identities = 124/324 (38%), Positives = 176/324 (54%), Gaps = 4/324 (1%) Frame = +2 Query: 158 EMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTA 337 +M + PWVEKYRP ++ ++ E++V+ LT +E LPH+LFYGPPGTGKTTT Sbjct: 20 KMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 79 Query: 338 LAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAV----AVGSARKGGYPCPPY 505 LA A Q+Y P + VLELNASDERGI+VVR I +FA A ++ G P+ Sbjct: 80 LAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG--TVPF 137 Query: 506 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 685 K++ILDEAD+MT+DAQNALRR +E Y+ RF ICNY++ I+ + SRC +FRF PL + Sbjct: 138 KLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQ 197 Query: 686 DVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXX 865 ++ R+ +I E L + L +S+GD+R I LQS A F Sbjct: 198 KLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCI 257 Query: 866 XGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHK 1045 P + + + N + + +GY + +++ D + DIPDE Sbjct: 258 GQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTL-DIPDEAM 316 Query: 1046 ARICRKLGEADKCLVDGADEYLQL 1117 + I LGE ++ L G QL Sbjct: 317 SAIITGLGEVEENLSTGCSNETQL 340
>P60374:RFCS_NANEQ Replication factor C small subunit - Nanoarchaeum equitans| Length = 322 Score = 217 bits (552), Expect = 1e-55 Identities = 126/312 (40%), Positives = 186/312 (59%), Gaps = 3/312 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRP+++ D+ +QEE+ + L + +E ++PH+LF GPPGTGKTT ALA+A++LYG + Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYG-D 62 Query: 371 LYKARVLELNASDERGINVVRTKIKDFA-AVAVGSARKGGYPCPPYKIIILDEADSMTED 547 ++ LELNASDERGI+V+R K+K+FA A +G P+KI+ LDEAD++T D Sbjct: 63 AWRENFLELNASDERGIDVIRHKVKEFARAKPIGDV--------PFKIVFLDEADALTRD 114 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRR ME YS+ TRF CNY S+IIEP+ SR F+FKPL ++ I I E Sbjct: 115 AQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGE 174 Query: 728 GLTL--DAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSL 901 GL L + ++ L I++GDLR+AI LQ+AA + A P + + + Sbjct: 175 GLILENEDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKE-IDEV 233 Query: 902 LVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADK 1081 L G F A + +++ + + + + V + I D K I K+G+ + Sbjct: 234 LNKAMQGNFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEF 293 Query: 1082 CLVDGADEYLQL 1117 +V+GAD+ +QL Sbjct: 294 RIVEGADDLVQL 305
>O94449:RFC4_SCHPO Replication factor C subunit 4 - Schizosaccharomyces pombe (Fission| yeast) Length = 342 Score = 216 bits (550), Expect = 2e-55 Identities = 126/321 (39%), Positives = 179/321 (55%) Frame = +2 Query: 155 GEMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 334 GE V PWVEKYRP + D+ EE + L + ++PH++ G PG GKTT+ Sbjct: 11 GEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTS 70 Query: 335 ALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKII 514 L +A+ L GP YK VLELNASDERGI+VVR +IK FA +K P +KII Sbjct: 71 ILCLAHALLGPA-YKEGVLELNASDERGIDVVRNRIKAFAQ------KKVILPPGRHKII 123 Query: 515 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVM 694 ILDEADSMT AQ ALRRTME YS TRF CN ++IIEP+ SRCA R+ L++ + Sbjct: 124 ILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQV 183 Query: 695 SNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGA 874 R+L+IC E + L+ L ++GD+R+A+ LQS FG Sbjct: 184 LQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQP 243 Query: 875 IPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARI 1054 P + ++L AC+SG DVA +++ I G+ +++ V+ D IP+ + + Sbjct: 244 SP-VAIHAMLTACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEM 302 Query: 1055 CRKLGEADKCLVDGADEYLQL 1117 +++G+ +++G LQL Sbjct: 303 LKEIGQTHMIILEGVQTLLQL 323
>Q0W037:RFCS_UNCMA Replication factor C small subunit - Uncultured methanogenic archaeon| RC-I Length = 322 Score = 215 bits (547), Expect = 5e-55 Identities = 124/310 (40%), Positives = 181/310 (58%), Gaps = 1/310 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRPR+++DV +++ R L + +++ +LPH+LF GPPG GKT A+A+A +LYG E Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYG-E 65 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 + + +ELNASDERGI+VVR IK+FA A +G A+ +KII LDEAD++T D Sbjct: 66 TWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK--------FKIIFLDEADALTSD 117 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ+ALRRTME Y+ RF CNY S+IIEP+ SRCA +RF PL+ ++ I I E Sbjct: 118 AQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNE 177 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 GL ++ + L +++GD+RRAI LQSAA + A P + L + Sbjct: 178 GLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKL 237 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 A D NK +I G + ++ Q + + ++ + ++GEAD L Sbjct: 238 ALNGQFMDSRNKLDELLITYGLSGTDIIDQIYRSMFEL-GLDEDVLVALVDRIGEADFRL 296 Query: 1088 VDGADEYLQL 1117 +GA E +Q+ Sbjct: 297 TEGASERIQI 306
>Q5UZE5:RFCS_HALMA Replication factor C small subunit - Haloarcula marismortui| (Halobacterium marismortui) Length = 325 Score = 214 bits (545), Expect = 8e-55 Identities = 124/310 (40%), Positives = 179/310 (57%), Gaps = 1/310 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRP+ + DV E +V L + + DL HMLF GP GTGKTT A AIA +LYG + Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 ++ LELNASDERGI+VVR +IK+FA + G Y+II LDEAD++T DA Sbjct: 76 -WREHFLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDA 126 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q+ALRRTME +S RF CNY S+II+P+ SRCA FRF PL++D ++ I I +EE Sbjct: 127 QSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEED 186 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 + L L L + GD+R+AI LQ AA + G + +++++ + Sbjct: 187 IELTEDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQS 245 Query: 911 CKSGEFDVANKEVSNIIA-DGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 G+F + + ++ +G ++ Q L + DI D+ R+ ++GE D + Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQ-LHRSIWEFDIDDDAAVRVLERIGETDYRI 304 Query: 1088 VDGADEYLQL 1117 GA+E +QL Sbjct: 305 TRGANERVQL 314
>Q3ITJ2:RFCS_NATPD Replication factor C small subunit - Natronomonas pharaonis (strain| DSM 2160 / ATCC 35678) Length = 325 Score = 213 bits (542), Expect = 2e-54 Identities = 123/310 (39%), Positives = 178/310 (57%), Gaps = 1/310 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRP+ + D+ E + L + DLPH+LF GP G GKTT A AIA ++YG + Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 ++ LELNASD+RGI+VVR +IK FA + G GY ++II LDEAD++T DA Sbjct: 74 -WRENFLELNASDQRGIDVVRDRIKSFARASFG-----GYD---HRIIFLDEADALTSDA 124 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q+ALRRTME +S TRF CNY S+II+P+ SRCA FRF PL + + +I I EG Sbjct: 125 QSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEG 184 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 + L + L + GD+R+AI LQ+AA + G A P++ ++ ++ Sbjct: 185 IELTDDGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEE-IREMVTE 243 Query: 911 CKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 G+F A ++ ++ D G ++ Q L V D+ + ++ ++GEAD + Sbjct: 244 AMDGDFTAARSQLETLLTDVGIAGGDIIDQ-LHRSVWEFDLEEREAVQLMERIGEADYRI 302 Query: 1088 VDGADEYLQL 1117 GA E LQL Sbjct: 303 TAGASEQLQL 312
>Q2FQT9:RFCS_METHJ Replication factor C small subunit - Methanospirillum hungatei| (strain JF-1 / DSM 864) Length = 323 Score = 213 bits (542), Expect = 2e-54 Identities = 119/318 (37%), Positives = 187/318 (58%), Gaps = 1/318 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRPR ++D+ Q+E++ L + + ++PH+LF G GTGKTT A+A+A + +G + Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGED 67 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 ++ ELNASDERGI+VVR +IK FA R + +KI+ LDEAD++T DA Sbjct: 68 -WQMNFRELNASDERGIDVVRNQIKQFA-------RTSPFGGSTFKILFLDEADALTTDA 119 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q+ALRRTMETY++ RF CNY ++II+P+ SRCA +RF+PL +S + I +++ Sbjct: 120 QSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQN 179 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 LT+ + + ++QGD+R+AI LQ AA L A P++ + L+ Sbjct: 180 LTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEE-IDDLIDL 238 Query: 911 CKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 +G F A + ++ D G +L+SQ +V D+P+ K R+ LGE D L Sbjct: 239 SLAGNFLGAGSSLQALLHDRGIAPQELISQLYRAVVKR-DLPEAVKVRLIDSLGETDFRL 297 Query: 1088 VDGADEYLQLLDMASETI 1141 +GA +Q+ + ++ + Sbjct: 298 SEGAGSDIQMQSLIAKFV 315
>A1RV38:RFCS2_PYRIL Replication factor C small subunit 2 - Pyrobaculum islandicum (strain| DSM 4184 / JCM 9189) Length = 320 Score = 213 bits (541), Expect = 2e-54 Identities = 126/321 (39%), Positives = 178/321 (55%), Gaps = 1/321 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRPR +V EEV L +++ ++PH+LFYGPPGTGKTT AL +A +LYG E Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 ++ LELNASDERGINV+R ++K+FA A VG A P+K++ILDEAD+MT D Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA--------PFKLVILDEADNMTSD 116 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRR ME Y++ TRF + NYIS IIEP+ SR RF PL ++ + +R+ +I E Sbjct: 117 AQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENE 176 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 G+ + AL T+ +QGD+R+AI LQ AA G + ++ L Sbjct: 177 GVKISDDALETIYEFTQGDMRKAINALQIAAAT-EKEITEDVVARALGMVSPRLLRETLQ 235 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 G F A ++ + DG + + + V D+P+ K + + EA Sbjct: 236 EALKGNFSKAMTQIYGFVVDGGVGELEIIRQIHREVLRLDVPEYVKPELAYIIAEAHYAT 295 Query: 1088 VDGADEYLQLLDMASETIRAL 1150 + GA Q+ ++ R L Sbjct: 296 LRGARGLTQIFGALAKIRRLL 316
>Q8ZWS2:RFCS2_PYRAE Replication factor C small subunit 2 - Pyrobaculum aerophilum| Length = 319 Score = 211 bits (538), Expect = 5e-54 Identities = 127/329 (38%), Positives = 181/329 (55%), Gaps = 6/329 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRPR +V EEV L ++ ++PH+LFYGPPGTGKTT AL +A +LYG E Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-E 64 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTED 547 ++ LELNASDERGINV+R ++K+FA A VG A P+K++ILDEAD+MT D Sbjct: 65 YWRENTLELNASDERGINVIRERVKEFARTAPVGKA--------PFKLVILDEADNMTSD 116 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRR ME Y++ TRF + NY+S IIEP+ SR RF PL ++ + R+ +I E Sbjct: 117 AQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENE 176 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 G+ + AL + +QGD+RRAI LQ AA + G + ++ L Sbjct: 177 GVKVSDDALEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVVAKALGMVSPRLLRETLY 235 Query: 908 ACKSGEFDVANKEVSNIIADG-----YPVSQLLSQFLDVIVNADDIPDEHKARICRKLGE 1072 G F A ++ +ADG + Q+ + L + D+ + K I + E Sbjct: 236 EAVKGSFGKAATQIYGFVADGGVGELEIIKQIHREMLRL-----DVQEYVKPEIAYIIAE 290 Query: 1073 ADKCLVDGADEYLQLLDMASETIRALFNI 1159 A ++ GA Q+ ++ R L ++ Sbjct: 291 AHYAILRGAHGLTQIYGALAKVRRLLKSV 319
>Q9D0F6:RFC5_MOUSE Replication factor C subunit 5 - Mus musculus (Mouse)| Length = 339 Score = 211 bits (538), Expect = 5e-54 Identities = 121/330 (36%), Positives = 189/330 (57%), Gaps = 1/330 (0%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+ + D+ ++++ + + LPH+L YGPPGTGKT+T LA A QLY Sbjct: 20 PWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 79 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 + + + VLELNASD+RGI++VR I FA+ +KG +K++ILDEAD+MT+D Sbjct: 80 KEFGSMVLELNASDDRGIDIVRGPILSFASTRT-IFKKG------FKLVILDEADAMTQD 132 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ ++M R+ H+ EE Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 192 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 + + + L T+S GD+RRA+ LQS FG + D + ++L Sbjct: 193 NVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKTD-IANILD 251 Query: 908 ACKSGEFDVANKEVSNI-IADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 + +F A K + + G + +L++ + + V+ D P + + K+ + + Sbjct: 252 WMLNQDFTTAYKNIMELKTLKGLALHDILTE-VHLFVHRVDFPSSVRIHLLTKMADIEYR 310 Query: 1085 LVDGADEYLQLLDMASETIRALFNIPQGLV 1174 L G E +QL ++ A F + + L+ Sbjct: 311 LSVGTSEKIQL-----SSLIAAFQVTRDLI 335
>P40937:RFC5_HUMAN Replication factor C subunit 5 - Homo sapiens (Human)| Length = 340 Score = 211 bits (538), Expect = 5e-54 Identities = 119/330 (36%), Positives = 191/330 (57%), Gaps = 1/330 (0%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+ + D+ ++++ + + LPH+L YGPPGTGKT+T LA A QLY Sbjct: 21 PWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKD 80 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 + + + VLELNASD+RGI+++R I FA+ +KG +K++ILDEAD+MT+D Sbjct: 81 KEFGSMVLELNASDDRGIDIIRGPILSFASTRT-IFKKG------FKLVILDEADAMTQD 133 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQNALRR +E +++ TRF ICNY+S+II L SRC +FRF PL+ ++M R+ H+ EE Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 + + + L T+S GD+RRA+ LQS FG + D + ++L Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSD-IANILD 252 Query: 908 ACKSGEFDVANKEVSNI-IADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 + +F A + ++ + G + +L++ + + V+ D P + + K+ + + Sbjct: 253 WMLNQDFTTAYRNITELKTLKGLALHDILTE-IHLFVHRVDFPSSVRIHLLTKMADIEYR 311 Query: 1085 LVDGADEYLQLLDMASETIRALFNIPQGLV 1174 L G +E +QL ++ A F + + L+ Sbjct: 312 LSVGTNEKIQL-----SSLIAAFQVTRDLI 336
>Q9HN27:RFCS_HALSA Replication factor C small subunit - Halobacterium salinarium| (Halobacterium halobium) Length = 322 Score = 209 bits (533), Expect = 2e-53 Identities = 120/310 (38%), Positives = 183/310 (59%), Gaps = 1/310 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WVEKYRP +++DV ++ L + ++ DLPH+LF GP GTGKT ++++IA +LYG + Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 ++ LELNASDERGI+VVR +IKDFA + G Y++I LDEAD++T+DA Sbjct: 72 -WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDA 122 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q+ALRRTME +S TRF CNY S+II+P+ SRCA FRF L +D ++ + I EG Sbjct: 123 QSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEG 182 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 L + L + GD+RRAI LQ+A+ A P++ +++++ Sbjct: 183 LEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEE-IETMVTE 241 Query: 911 CKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 G+F A + +++ + G ++ Q + V D+ + R+ +LGEAD + Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQ-VHRSVWEFDVEEAAAVRLLDRLGEADYRI 300 Query: 1088 VDGADEYLQL 1117 +GA+E +QL Sbjct: 301 AEGANERVQL 310
>O26343:RFCS_METTH Replication factor C small subunit - Methanobacterium| thermoautotrophicum Length = 321 Score = 204 bits (520), Expect = 6e-52 Identities = 121/314 (38%), Positives = 177/314 (56%), Gaps = 4/314 (1%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+++ D+ QE ++ L +E +P+++F GP G GKTT ALA+A ++ G Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILG- 65 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 E ++ LELNASD RGI+ VRT IK+F + A P++II LDE D+MT+D Sbjct: 66 EYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGA--------PFRIIFLDEVDNMTKD 117 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ+ALRR ME Y+K + F CNY S+II+P+ SRCA FRF PL + R+ +I +E Sbjct: 118 AQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKE 177 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 L +AHAL T+ ++GDLR+AI LQSAA L A P D V+ ++ Sbjct: 178 NLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKD-VRKMIK 236 Query: 908 ACKSGEFDVANKEVSNIIA----DGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEA 1075 G+F A + I+ G + + Q L + ++ + + +GE Sbjct: 237 TILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEY 296 Query: 1076 DKCLVDGADEYLQL 1117 D + +GA+ +QL Sbjct: 297 DFRIREGANPRIQL 310
>A3CUX9:RFCS_METMJ Replication factor C small subunit - Methanoculleus marisnigri| (strain ATCC 35101 / DSM 1498 / JR1) Length = 322 Score = 203 bits (516), Expect = 2e-51 Identities = 120/310 (38%), Positives = 180/310 (58%), Gaps = 1/310 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+EKYRPR++ ++ Q+++V L + ++T +LPH+LF G G GKTT A+A+A + +G + Sbjct: 8 WIEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFG-D 66 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 ++ E+NASDERGI+VVR +IK+FA R +KI+ LDEAD++T DA Sbjct: 67 SWQTNFREMNASDERGIDVVRNQIKEFA-------RTSPLAGATFKILFLDEADALTTDA 119 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q ALRRTMETY++ RF CNY S+II+P+ SRCA +RF+PL + + I + EG Sbjct: 120 QAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEG 179 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 LT+ AL + ++ GD+R+AI LQ AA L A P++ + LL Sbjct: 180 LTVTEGALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARPEE-IDELLDL 238 Query: 911 CKSGEFDVANKEVSNII-ADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 G FD A + + + G ++L++Q +V DI K ++ LGE D L Sbjct: 239 SIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQR-DIDRTLKVKLIDALGETDFRL 297 Query: 1088 VDGADEYLQL 1117 +GA +Q+ Sbjct: 298 SEGASSDIQM 307
>Q977Z9:RFCS_THEVO Replication factor C small subunit - Thermoplasma volcanium| Length = 318 Score = 202 bits (515), Expect = 2e-51 Identities = 118/312 (37%), Positives = 183/312 (58%), Gaps = 3/312 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRP+ + ++ ++E ++ L + +E +LPH+LF G GTGKT+TA+A+A +L+G E Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG-E 63 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPP--YKIIILDEADSMTE 544 +K +E+NAS+E GI+V+R KIKD A + P P +KI+ LDEAD +T Sbjct: 64 SWKENFIEMNASNENGIDVIRNKIKDIARIR---------PSNPLGFKILFLDEADQLTA 114 Query: 545 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSE 724 +AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ ++ + ++ I Sbjct: 115 EAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKN 174 Query: 725 EGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLL 904 EG T+D ++ + +S GD+R+AI LQ A G A P ++V L+ Sbjct: 175 EGFTIDDESMEAMVEVSGGDMRKAINVLQ-AVYTSGEISPKKIYEIIGYASP-ESVNKLI 232 Query: 905 VACKSGEFDVANKEVSN-IIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADK 1081 +G FD A + V +I DG ++ + IV A +P + K I + L +A+ Sbjct: 233 SRAINGLFDEARQIVDKMMIEDGLSGIDIVKS-VHSIVRASVVPPKQKIEIIKALADAEF 291 Query: 1082 CLVDGADEYLQL 1117 +V+G+++ +QL Sbjct: 292 RIVEGSNDRIQL 303
>O74111:RFC3_ARXAD Replication factor C subunit 3 - Arxula adeninivorans (Yeast)| Length = 338 Score = 202 bits (514), Expect = 3e-51 Identities = 123/314 (39%), Positives = 179/314 (57%), Gaps = 3/314 (0%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 361 S PWVEKYRP + +VA E V+ + +E LPH+LF+GPPGTGKTTT +A+A Q+Y Sbjct: 16 SLPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIY 75 Query: 362 GPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMT 541 G Y+ +LELNASDERGI+VVR +IK FA+ G+ K++ILDEAD+MT Sbjct: 76 GKN-YRNMILELNASDERGIDVVRDQIKTFASTR--QIFSSGF-----KLVILDEADAMT 127 Query: 542 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICS 721 AQNALRR +E YS TRF + NY ++ L SRC +FRF PL ED + +R+ H+ Sbjct: 128 NAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIE 187 Query: 722 EEGLTLDAHALSTLSTISQGDLRRAITYLQS--AARLFGXXXXXXXXXXXXGAIPDDTVK 895 +E + L A +L +S GD+RRA+ LQ+ A+ G G+ ++ Sbjct: 188 QESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIR 247 Query: 896 SLLVACKSGEFDVANKEVSNI-IADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGE 1072 ++L A G ++ A S I + G ++ +L+ F V D+ ++ + + L E Sbjct: 248 TVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFA-VEFQKLDLQNKTRIALLDGLSE 306 Query: 1073 ADKCLVDGADEYLQ 1114 + L G +E +Q Sbjct: 307 IEWRLSSGGNESIQ 320
>P38629:RFC3_YEAST Replication factor C subunit 3 - Saccharomyces cerevisiae (Baker's| yeast) Length = 340 Score = 197 bits (500), Expect = 1e-49 Identities = 113/314 (35%), Positives = 176/314 (56%), Gaps = 5/314 (1%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP + +V Q EV+ + ++ LPH+LFYGPPGTGKT+T +A+A ++YG Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 Y VLELNASD+RGI+VVR +IKDFA+ ++ +K+IILDEAD+MT Sbjct: 74 N-YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-------FKLIILDEADAMTNA 125 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQNALRR +E Y+K TRF + NY ++ L SRC +FRF+PL ++ + RI ++ E Sbjct: 126 AQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHE 185 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG----XXXXXXXXXXXXGAIPDDTVK 895 L L +A L +S GD+RR + LQS GA +K Sbjct: 186 KLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLK 245 Query: 896 SLLVACKSGEFDVANKEVSNI-IADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGE 1072 ++L + ++ A+ ++ + A G + L+ + ++ + + +E + + KL + Sbjct: 246 AVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLAD 305 Query: 1073 ADKCLVDGADEYLQ 1114 + + G ++ +Q Sbjct: 306 IEYSISKGGNDQIQ 319
>Q6L1I0:RFCS_PICTO Replication factor C small subunit - Picrophilus torridus| Length = 318 Score = 196 bits (499), Expect = 2e-49 Identities = 113/310 (36%), Positives = 174/310 (56%), Gaps = 1/310 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRP+++ DV ++E + L + ++ DLPH++F GP GTGKT+TA+A+ +L+G + Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 +K LELNASDERGI+++R IKDFA + + K G+ KII LDEAD +T +A Sbjct: 65 -WKENFLELNASDERGIDIIRNNIKDFAKIR--PSNKLGF-----KIIFLDEADQLTNEA 116 Query: 551 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEG 730 Q ALRRTME + TRF F CNY S+II P+ SRC RF+PL ++ M ++ I E Sbjct: 117 QAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEK 176 Query: 731 LTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVA 910 +D +L + IS GD+R+AI +Q+ G I + K+L+ Sbjct: 177 FDIDDDSLDAIYEISDGDMRKAINVMQAIQST--GEIKPSKIYEISGEINKNEYKNLISL 234 Query: 911 CKSGEFDVANKEVSNIIADGYPVSQL-LSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 +G F A + ++ D Y +S + + + + + + I + K I L E + + Sbjct: 235 SLNGAFSDAKSLLDKMLVD-YGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRI 293 Query: 1088 VDGADEYLQL 1117 G + +Q+ Sbjct: 294 SQGGSDNVQM 303
>Q5UQ72:RFCS4_MIMIV Putative replication factor C small subunit L510 - Mimivirus| Length = 363 Score = 195 bits (496), Expect = 4e-49 Identities = 122/346 (35%), Positives = 190/346 (54%), Gaps = 32/346 (9%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 361 S PW+EKYRP++++D+ + ++ + N+ + ++ H LFYGPPGTGKT+ LA+ +++ Sbjct: 6 SVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIF 65 Query: 362 GPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSAR-KGGYPCPPYKIIILDEADSM 538 E ++ RV+E NASD+RGIN VR KI + A V + + G P YKIIILDEADSM Sbjct: 66 -KEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSM 124 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 T++AQ+ALR +E YS TRF FICNYI++I + + SRC+ FK LS++ M ++ I Sbjct: 125 TDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDIS 184 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTV-- 892 +E + L + L T+ +S GD+R+AI LQ+ + + T+ Sbjct: 185 LKESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTYNFKKNLTKKLKDMTLLELKTILF 244 Query: 893 ---KSLLVACKSGE---------------------FDVAN-KEVSN----IIADGYPVSQ 985 KS + + S E D N EVSN IIA G+P+ Sbjct: 245 MTKKSSITSTISEEDVYEISASITLDKAKGIIDDTIDCNNIVEVSNLSKKIIAMGFPIDN 304 Query: 986 LLSQFLDVIVNADDIPDEHKARICRKLGEADKCLVDGADEYLQLLD 1123 +L+Q I+ ++ + ++I G+ + + +EY+QLL+ Sbjct: 305 ILTQLNKCILESNKLDVNQISKIIIYSGDILLKMKECGNEYIQLLN 350
>Q9HI47:RFCS_THEAC Replication factor C small subunit - Thermoplasma acidophilum| Length = 318 Score = 195 bits (495), Expect = 5e-49 Identities = 114/312 (36%), Positives = 183/312 (58%), Gaps = 3/312 (0%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W EKYRP+ + ++ ++E ++ L + +E ++PH+LF G GTGKT+TA+A+A +L+G + Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFG-D 63 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPP--YKIIILDEADSMTE 544 +K ++E+NAS+E GI+V+R KIKD A + P P +KI+ LDEAD +T Sbjct: 64 SWKENMVEMNASNENGIDVIRNKIKDIARIK---------PSNPLGFKILFLDEADQLTA 114 Query: 545 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSE 724 +AQ ALRRTME YS+ TRF F CNY S+II P+ SR RF+P+ ++ +S ++ I Sbjct: 115 EAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKN 174 Query: 725 EGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLL 904 EG +D ++ L +S GD+R+AI LQ A G A P + ++ ++ Sbjct: 175 EGFQIDEESMHALVEVSAGDMRKAINVLQ-AVYTSGEISPKKIYEIIGYASP-EKIQKMI 232 Query: 905 VACKSGEFDVANKEVSN-IIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADK 1081 +G FD A + V +I DG ++ + L V + I + K I + L +A+ Sbjct: 233 SRAINGLFDEAREIVDGMLIYDGLSGIDIV-RSLHSYVRSSMISPKQKIEIIKALADAEF 291 Query: 1082 CLVDGADEYLQL 1117 +V+G+++ +QL Sbjct: 292 RIVEGSNDRIQL 303
>Q2NH89:RFCS_METST Replication factor C small subunit - Methanosphaera stadtmanae| (strain DSM 3091) Length = 321 Score = 195 bits (495), Expect = 5e-49 Identities = 119/320 (37%), Positives = 174/320 (54%), Gaps = 4/320 (1%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+ + DV QE++V L +E LP+++F G G GKTT ALA+A L G Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG- 62 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAV-AVGSARKGGYPCPPYKIIILDEADSMTE 544 E ++ LELNASD RGI+ VR +IK F + AVG+ P++II LDE D+MT+ Sbjct: 63 EYWQQNFLELNASDARGIDTVRNEIKSFCKLKAVGA---------PFRIIFLDEVDNMTK 113 Query: 545 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSE 724 DAQ ALRR ME Y+K + F CNY S+II+P+ SRCA FRF P+ + R+ +I SE Sbjct: 114 DAQQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASE 173 Query: 725 EGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLL 904 EG+ + AL + +QGD+R++I LQ++ A P D K + Sbjct: 174 EGIEAEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIIN 233 Query: 905 VACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADD---IPDEHKARICRKLGEA 1075 A + + +I +G L++QF + IP+ ++ + E Sbjct: 234 KALNHDFMEARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSEC 293 Query: 1076 DKCLVDGADEYLQLLDMASE 1135 D + +G++ LQL + S+ Sbjct: 294 DYRIREGSNPRLQLEALLSK 313
>O14003:RFC3_SCHPO Replication factor C subunit 3 - Schizosaccharomyces pombe (Fission| yeast) Length = 342 Score = 194 bits (494), Expect = 6e-49 Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 1/314 (0%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP ++DV ++++ L + + +PHMLFYGPPGTGKT+T LA A ++YGP Sbjct: 24 PWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP 83 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 Y+ +++ELNASD+RGI+ VR +IK+FA+ A +K+IILDEAD+MT Sbjct: 84 N-YRNQLMELNASDDRGIDAVREQIKNFASTRQIFAST-------FKMIILDEADAMTLA 135 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQNALRR +E Y+K RF ICNYI++I + SRC +FRF+PL + + H+ E Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 +D A + +S+GD+R+A+ LQ+ + P D + L Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSD-IDYFLK 254 Query: 908 ACKSGEFDVANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKC 1084 + + EF +A +S+I G + +L+ + + + P+ K I +L + Sbjct: 255 SIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNA-KIFILDQLATIEHR 313 Query: 1085 LVDGADEYLQLLDM 1126 + G E +QL M Sbjct: 314 MSFGCSEKIQLSAM 327
>P53033:RFC2_CHICK Replication factor C subunit 2 - Gallus gallus (Chicken)| Length = 359 Score = 189 bits (479), Expect = 3e-47 Identities = 119/310 (38%), Positives = 169/310 (54%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP ++ +V E+ V L + ++P+++ GPPGTGKTT+ L +A L GP Sbjct: 42 PWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGP 101 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 L K VLELNAS++RGI+VVR KIK FA +K P +KIIILDEADSMT+ Sbjct: 102 AL-KDAVLELNASNDRGIDVVRNKIKMFAQ------QKVTLPKGRHKIIILDEADSMTDG 154 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + R+L I +E Sbjct: 155 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKE 214 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 + L + +QGD+R+A+ LQS FG P VK ++ Sbjct: 215 DVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHP-LLVKEMIQ 273 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 C + D A K ++++ GY ++ V +P+ K +++G + Sbjct: 274 HCINANIDEAYKILAHLWRLGYSPEDVIGNIFRV-CKTFQMPEYLKLEFIKEIGYTHMKI 332 Query: 1088 VDGADEYLQL 1117 +G + LQ+ Sbjct: 333 AEGVNSLLQM 342
>P53034:RFC2_DROME Replication factor C subunit 2 - Drosophila melanogaster (Fruit fly)| Length = 331 Score = 187 bits (474), Expect = 1e-46 Identities = 118/311 (37%), Positives = 167/311 (53%), Gaps = 1/311 (0%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PW+EKYRP + K++ E+ V L+ + P+++ GPPG GKTTT +A L G Sbjct: 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG- 75 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 + YK VLELNAS+ERGI+VVR KIK FA +K P +KI+ILDEADSMTE Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQ------QKVTLPRGRHKIVILDEADSMTEG 129 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME YS TRF CN +IIEP+ SRCA RF LS+ + +++ + E Sbjct: 130 AQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWE 189 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 L L + +QGD+R+ + LQS A+ FG P ++ ++ Sbjct: 190 KLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHP-KLLEEMIH 248 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEH-KARICRKLGEADKC 1084 C + + A K ++ + GY +++ V + DEH K R++G Sbjct: 249 HCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRIN--IDEHLKLDFIREIGITHMK 306 Query: 1085 LVDGADEYLQL 1117 ++DG + LQL Sbjct: 307 IIDGINSLLQL 317
>P40339:RFC4_YEAST Replication factor C subunit 4 - Saccharomyces cerevisiae (Baker's| yeast) Length = 323 Score = 186 bits (473), Expect = 2e-46 Identities = 114/316 (36%), Positives = 166/316 (52%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+ + D+ +E + L + ++PHM+ G PG GKTT+ +A++L G Sbjct: 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 Y VLELNASD+RGI+VVR +IK FA +K P +KI+ILDEADSMT Sbjct: 70 S-YADGVLELNASDDRGIDVVRNQIKHFAQ------KKLHLPPGKHKIVILDEADSMTAG 122 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME YS TRF F CN ++IIEPL SRCA R+ LS++ + R+L I E Sbjct: 123 AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLE 182 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 + L + ++GD+R+AI LQS G P K LL Sbjct: 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLA 242 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 + + +++ GY +++ V N + + + + +++G + Sbjct: 243 SNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRI 299 Query: 1088 VDGADEYLQLLDMASE 1135 ++G YLQL M ++ Sbjct: 300 LEGVGTYLQLASMLAK 315
>Q5JHP2:RFCS_PYRKO Replication factor C small subunit - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 866 Score = 184 bits (468), Expect = 7e-46 Identities = 118/286 (41%), Positives = 165/286 (57%), Gaps = 2/286 (0%) Frame = +2 Query: 308 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKG 484 P TT ALA+A +L+G E ++ LELNASDERGINV+R K+K+FA +G A Sbjct: 594 PTVVHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS-- 650 Query: 485 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 664 +KII LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA F Sbjct: 651 ------FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIF 704 Query: 665 RFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXX 844 RF+PL ++ ++ RI +I EGL L L + +++GDLRRAI LQ+AA L Sbjct: 705 RFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAALDTKITD 764 Query: 845 XXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNI-IADGYPVSQLLSQFLDVIVNA 1021 A P+D V+ ++ G F A +++ +I + G +L Q + N Sbjct: 765 ENVFLVASRARPED-VREMMTLALEGNFLKAREKLRDILLRQGLSGEDVLIQMHKEVFNL 823 Query: 1022 DDIPDEHKARICRKLGEADKCLVDGADEYLQLLDMASETIRALFNI 1159 IP++ K + K+GE + LV+GA+E +QL E + A F I Sbjct: 824 -PIPEDKKVALADKIGEYNFRLVEGANEMIQL-----EALLAQFTI 863 Score = 63.2 bits (152), Expect = 3e-09 Identities = 24/50 (48%), Positives = 38/50 (76%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 334 +PWVEKYRP++++D+ Q+ +V+ L + ++T +PH+LF GPPG GK T Sbjct: 13 KPWVEKYRPQRLEDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>Q9WUK4:RFC2_MOUSE Replication factor C subunit 2 - Mus musculus (Mouse)| Length = 349 Score = 184 bits (467), Expect = 9e-46 Identities = 115/310 (37%), Positives = 167/310 (53%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP ++ ++ E+ V L ++P+++ GPPGTGKTT+ L +A L GP Sbjct: 32 PWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 91 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 L K VLELNAS++RGI+VVR KIK FA +K P +KIIILDEADSMT+ Sbjct: 92 AL-KDAVLELNASNDRGIDVVRNKIKMFAQ------QKVTLPKGRHKIIILDEADSMTDG 144 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + R++++ +E Sbjct: 145 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKE 204 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 + L + +QGD+R+A+ LQS FG P VK ++ Sbjct: 205 KVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHP-LLVKEMIQ 263 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 C D A K ++++ GY ++ V + + K +++G + Sbjct: 264 HCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRV-CKTFPMAEYLKLEFIKEIGYTHMKV 322 Query: 1088 VDGADEYLQL 1117 +G + LQ+ Sbjct: 323 AEGVNSLLQM 332
>P35250:RFC2_HUMAN Replication factor C subunit 2 - Homo sapiens (Human)| Length = 354 Score = 184 bits (467), Expect = 9e-46 Identities = 114/310 (36%), Positives = 168/310 (54%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP ++ ++ E+ V L ++P+++ GPPGTGKTT+ L +A L GP Sbjct: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGP 96 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 L K +LELNAS++RGI+VVR KIK FA +K P +KIIILDEADSMT+ Sbjct: 97 AL-KDAMLELNASNDRGIDVVRNKIKMFAQ------QKVTLPKGRHKIIILDEADSMTDG 149 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ ALRRTME YSK TRF CN +IIEP+ SRCA R+ L++ + R++++ +E Sbjct: 150 AQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKE 209 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLV 907 + L + +QGD+R+A+ LQS FG P VK ++ Sbjct: 210 RVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHP-LLVKEMIQ 268 Query: 908 ACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCL 1087 C + D A K ++++ GY ++ V + + K +++G + Sbjct: 269 HCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRV-CKTFQMAEYLKLEFIKEIGYTHMKI 327 Query: 1088 VDGADEYLQL 1117 +G + LQ+ Sbjct: 328 AEGVNSLLQM 337
>Q8U4J3:RFCS_PYRFU Replication factor C small subunit - Pyrococcus furiosus| Length = 852 Score = 180 bits (456), Expect = 2e-44 Identities = 111/271 (40%), Positives = 154/271 (56%), Gaps = 1/271 (0%) Frame = +2 Query: 308 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKG 484 P TT ALA+A +L+G E ++ LELNASDERGINV+R K+K+FA +G A Sbjct: 579 PTVVHNTTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS-- 635 Query: 485 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 664 +KII LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA F Sbjct: 636 ------FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 689 Query: 665 RFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXX 844 RF+PL ++ ++ R+ +I EGL L L + I++GD+RRAI LQ+AA L Sbjct: 690 RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITD 749 Query: 845 XXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNAD 1024 A P+D + +L+A K K ++ G +L Q + N Sbjct: 750 ENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL- 808 Query: 1025 DIPDEHKARICRKLGEADKCLVDGADEYLQL 1117 I + K + K+GE + LV+GA+E +QL Sbjct: 809 PIEEPKKVLLADKIGEYNFRLVEGANEIIQL 839 Score = 63.5 bits (153), Expect = 2e-09 Identities = 25/50 (50%), Positives = 37/50 (74%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 334 +PWVEKYRP+++ D+ QE +V+ L + ++T +PH+LF GPPG GK T Sbjct: 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 62
>O57852:RFCS_PYRHO Replication factor C small subunit - Pyrococcus horikoshii| Length = 855 Score = 178 bits (452), Expect = 5e-44 Identities = 110/271 (40%), Positives = 154/271 (56%), Gaps = 1/271 (0%) Frame = +2 Query: 308 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKG 484 P TT ALA++ +L+G E ++ LELNASDERGINV+R K+K+FA +G A Sbjct: 581 PTVVHNTTAALALSRELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS-- 637 Query: 485 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 664 +KII LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA F Sbjct: 638 ------FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 691 Query: 665 RFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXX 844 RF+PL ++ ++ R+ +I EGL L L + I++GD+RRAI LQ+AA L Sbjct: 692 RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITD 751 Query: 845 XXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNAD 1024 A P+D + +L+A K K ++ G +L Q + N Sbjct: 752 ENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNL- 810 Query: 1025 DIPDEHKARICRKLGEADKCLVDGADEYLQL 1117 I + K + K+GE + LV+GA+E +QL Sbjct: 811 PIDEPTKVYLADKIGEYNFRLVEGANEMIQL 841 Score = 62.0 bits (149), Expect = 6e-09 Identities = 24/50 (48%), Positives = 37/50 (74%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 334 +PWVEKYRP+++ ++ QE +V+ L + ++T +PH+LF GPPG GK T Sbjct: 15 KPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>Q5UP47:RFCS3_MIMIV Putative replication factor C small subunit L499 - Mimivirus| Length = 344 Score = 175 bits (443), Expect = 5e-43 Identities = 95/215 (44%), Positives = 133/215 (61%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+++ + +++ L +E+ LPH+LF+GP G+GKT+T A ++YG Sbjct: 18 PWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGK 77 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 + +LELNAS+ERGI VRTKIK+F + G +K++ILDE DSMT + Sbjct: 78 YI-NYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMTVE 135 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEE 727 AQ LR+T+E S TRF ICN I +I L SRCA FRF PL+E M R+ IC E Sbjct: 136 AQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLE 195 Query: 728 GLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 G+ + A++++ IS+GD+R AI LQ + G Sbjct: 196 GVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIG 230
>Q5UQ47:RFCS1_MIMIV Putative replication factor C small subunit R395 - Mimivirus| Length = 319 Score = 149 bits (375), Expect = 4e-35 Identities = 95/323 (29%), Positives = 161/323 (49%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 361 S PW+EKYRP + DV + + + + L+ + H++ G PG GKT+T IA +L Sbjct: 4 SIPWIEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELL 63 Query: 362 GPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMT 541 G ++ + LE+NA+++RG+ + T I F V +A K KII+LDEAD MT Sbjct: 64 GEDMSQG-YLEINAAEDRGVRSISTIIPPFCK-KVFAANKS-------KIILLDEADIMT 114 Query: 542 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICS 721 Q + ++ + + T+F F CN S+IIE + S C RFK L+++ ++ + IC Sbjct: 115 SKCQYDINNMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICV 174 Query: 722 EEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSL 901 E + D L T+ IS GD+R++I LQ A F P+D ++ + Sbjct: 175 NEKIPYDEQGLRTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPED-IRKI 233 Query: 902 LVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADK 1081 + C + A++ ++NII Y +++ F+ ++ D+ + + R+ + E Sbjct: 234 ISLCLESNLEKADEIMNNIIKLDYCYFDIVTSFI-YVLKVYDMSENLRLRLIMIVNETKI 292 Query: 1082 CLVDGADEYLQLLDMASETIRAL 1150 + G LQL M I+ + Sbjct: 293 NISKGLRSKLQLTGMICRLIKEI 315
>Q8TZC4:RFCS_METKA Replication factor C small subunit - Methanopyrus kandleri| Length = 635 Score = 145 bits (365), Expect = 6e-34 Identities = 89/243 (36%), Positives = 135/243 (55%), Gaps = 2/243 (0%) Frame = +2 Query: 395 LNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRT 571 L+ SDERGI+V+RTK+K+FA +G AR +KII LDEAD++T D+Q ALRR Sbjct: 385 LHNSDERGIDVIRTKVKNFARTRPMGGAR--------FKIIFLDEADNLTRDSQQALRRI 436 Query: 572 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHA 751 ME YS RF NY S II+P+ SRC F+F L E + R+ I EG+ + A Sbjct: 437 MEMYSDACRFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDA 496 Query: 752 LSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVACKSGEFD 931 L + +S+GD+RRAI LQ+AA L A P++ V+ ++ +G+F+ Sbjct: 497 LDAIVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEE-VREMIHHAWNGDFE 555 Query: 932 VANKEVSNIIAD-GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCLVDGADEY 1108 A + + ++ G ++ Q I + D+IP+E + +G+ + L+ G+DE Sbjct: 556 RARELLHELLTRYGMSGEDVVRQVHREIFDMDEIPEEAIPELVNAVGDFEYRLIRGSDER 615 Query: 1109 LQL 1117 +QL Sbjct: 616 IQL 618 Score = 82.0 bits (201), Expect = 6e-15 Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 8/109 (7%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 PWVEKYRP+++ D+ QE VV L + D+P++LF GPPGTGKTT AL +A +L+G Sbjct: 12 PWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFG- 70 Query: 368 ELYKARVLELNAS--------DERGINVVRTKIKDFAAVAVGSARKGGY 490 E ++ LELNAS RG V+R +D + G R G Y Sbjct: 71 EHWRDNFLELNASVSADTPILVRRGGEVLRVTFEDLDSWYFGD-RGGEY 118
>P38251:RFC5_YEAST Replication factor C subunit 5 - Saccharomyces cerevisiae (Baker's| yeast) Length = 354 Score = 122 bits (306), Expect = 4e-27 Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 29/239 (12%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETA-DLPHMLFYGPPGTGKTTTALAIAYQLYGP 367 WV+KYRP+ + ++H EE+ L + + DLPH+L YGP GTGK T +A+ ++GP Sbjct: 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 Query: 368 ELYKARV------------LELNA----------SDERGIN---VVRTKIKDFAAVAVGS 472 +Y+ ++ LELN + G N V++ +K+ A + Sbjct: 64 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 123 Query: 473 AR--KGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 646 + K G YK +I++EA+S+T+DAQ ALRRTME YSK R +C+ +S II P+ Sbjct: 124 FQDSKDGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182 Query: 647 SRCAKFRFKPLSEDVMSNRILHICSEEGLTLDA-HALSTLSTISQGDLRRAITYLQSAA 820 SRC R S+ +S + + + E + L+ L ++ S G+LR ++ L+S A Sbjct: 183 SRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241
>Q2TBV1:RFC3_BOVIN Replication factor C subunit 3 - Bos taurus (Bovine)| Length = 356 Score = 118 bits (295), Expect = 8e-26 Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 23/226 (10%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WV+KYRP + + + +E L N ++ D PH+L YGP G GK T + I +LYG Sbjct: 4 WVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63 Query: 371 LYKARV-----------------------LELNASDERGINVVRTKIKDFAAVAVGSARK 481 + K R+ LE+N SD N R I++ S + Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAG--NSDRVVIQEMLKTVAQSQQL 121 Query: 482 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 661 +K+++L E D +T+DAQ+ALRRTME Y R CN S++I P+ SRC Sbjct: 122 ETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 181 Query: 662 FRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAI 799 R S + + + + +C +EGL L L+ S +LR+A+ Sbjct: 182 VRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKAL 227
>P40938:RFC3_HUMAN Replication factor C subunit 3 - Homo sapiens (Human)| Length = 356 Score = 117 bits (294), Expect = 1e-25 Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 23/226 (10%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WV+KYRP + + + +E L N ++ D PH+L YGP G GK T + I +LYG Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63 Query: 371 LYKARV-----------------------LELNASDERGINVVRTKIKDFAAVAVGSARK 481 + K R+ LE+N SD N R I++ S + Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAG--NSDRVVIQEMLKTVAQSQQL 121 Query: 482 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 661 +K+++L E D +T+DAQ+ALRRTME Y R CN S++I P+ SRC Sbjct: 122 ETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 181 Query: 662 FRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAI 799 R S + + + + +C +EGL L + L+ S +LR+A+ Sbjct: 182 VRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>Q8R323:RFC3_MOUSE Replication factor C subunit 3 - Mus musculus (Mouse)| Length = 356 Score = 117 bits (293), Expect = 1e-25 Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 23/226 (10%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 WV+KYRP + + + +E L N ++ D PH+L YGP G GK T + I +LYG Sbjct: 4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGIG 63 Query: 371 LYKARV-----------------------LELNASDERGINVVRTKIKDFAAVAVGSARK 481 + K R+ LE+N SD N R I++ S + Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAG--NSDRVVIQEMLKTVAQSQQL 121 Query: 482 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 661 +K+++L E D +T+DAQ+ALRRTME Y R CN S++I P+ SRC Sbjct: 122 ETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLA 181 Query: 662 FRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAI 799 R S + + + + +C +EGL L + L+ S +LR+A+ Sbjct: 182 VRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKAL 227
>Q2FQR4:RFCL_METHJ Replication factor C large subunit - Methanospirillum hungatei| (strain JF-1 / DSM 864) Length = 483 Score = 107 bits (268), Expect = 1e-22 Identities = 72/214 (33%), Positives = 109/214 (50%), Gaps = 4/214 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTN--TLETADLPHMLFYGPPGTGKTTTALAIAYQLYG 364 W EKYRPR + ++ E + ++ T T + P ++ YG PG GKT++A A+A+ + Sbjct: 3 WAEKYRPRHLNEMVGNREALHQMSEWATRWTVESPPLILYGKPGIGKTSSAWALAHDM-- 60 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTE 544 V+ELNASD+R V+ VA GSA G K+IILDEAD++ Sbjct: 61 ----NWEVVELNASDQRTKAVIEK-------VAGGSASTGSLTGAARKLIILDEADNLQG 109 Query: 545 DAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 +A R + + R I N + + + + C K +FK L + R+ IC Sbjct: 110 NADRGGARAIAEVIRQARQPLILIANDLYGLDGTIRNLCTKVQFKALPAKSLVPRLREIC 169 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 S E LT A AL+ ++ S GD+R A+T L ++A Sbjct: 170 SREQLTCSAQALTDIAEQSGGDIRSAVTMLYASA 203
>O94697:RFC5_SCHPO Replication factor C subunit 5 - Schizosaccharomyces pombe (Fission| yeast) Length = 358 Score = 102 bits (255), Expect = 3e-21 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 25/233 (10%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 W+++YRP+ + + + +++ L + T + PH+L YGP G GK T +AI +LYGP Sbjct: 3 WLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPG 62 Query: 371 LYKARV-----------------------LELNASDERGIN--VVRTKIKDFAAVAVGSA 475 K ++ LE+ SD + +++ +KD A SA Sbjct: 63 SEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQ----SA 118 Query: 476 RKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 655 + +K+++++ AD +T DAQ ALRRTME YS R I N S+IIEP+ SR Sbjct: 119 QVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRT 178 Query: 656 AKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 R + + + + I + +GL L+ ++ +LR+AI L++ Sbjct: 179 LMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>Q8X082:RFC5_NEUCR Replication factor C subunit 5 - Neurospora crassa| Length = 352 Score = 100 bits (248), Expect = 2e-20 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 21/223 (9%) Frame = +2 Query: 194 VEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 373 V+K+RPR + + + E+ L + ++ D PH+L YGP G GK T +A +LYGP + Sbjct: 5 VDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGPGV 64 Query: 374 YK----ARVLELNASDERGINVV-----------------RTKIKDFAAVAVGSARKGGY 490 K ARV + +++ + N+V R ++D + + Sbjct: 65 EKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLS 124 Query: 491 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 670 +K+++++EAD +T DAQ ALRRTME YS R + N + II P+ SRC R Sbjct: 125 AKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRV 184 Query: 671 KPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAI 799 + + + + +EG + ++ S +LRRA+ Sbjct: 185 AAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRAL 227
>O57853:RFCL_PYRHO Replication factor C large subunit - Pyrococcus horikoshii| Length = 468 Score = 97.8 bits (242), Expect = 1e-19 Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 6/218 (2%) Frame = +2 Query: 179 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTGKTTTAL 340 P PW+EKYRPR++ ++ +QE+ + + +E+ +L GPPG+GKTTT Sbjct: 2 PDVPWIEKYRPRKLSEIVNQEQALEKVRAWIESWLHGNPPKKKALLLAGPPGSGKTTTVY 61 Query: 341 AIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL 520 A+A++ Y V+ELNASDER N + ++ + + R+ KII L Sbjct: 62 ALAHE------YNFEVIELNASDERTYNKIARYVQAAYTMDIMGKRR--------KIIFL 107 Query: 521 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSN 700 DEAD++ + + ++ N+ + + + R +K L++ + + Sbjct: 108 DEADNIEPSGAPEIAKLID--KARNPIIMAANHYWEVPKEIRDRAELVEYKRLNQRDVIS 165 Query: 701 RILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 ++ I EG+T+ L+ ++ S GDLR AI LQ+ Sbjct: 166 ALVRILKREGITVPKEILTEIAKRSSGDLRAAINDLQT 203
>Q9V2G4:RFCS_PYRAB Replication factor C small subunit - Pyrococcus abyssi| Length = 1437 Score = 96.3 bits (238), Expect = 3e-19 Identities = 59/169 (34%), Positives = 89/169 (52%) Frame = +2 Query: 611 CNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLR 790 CNY S+IIEP+ SRCA FRF+PL+++ ++ R+ +I EGL L L + I++GD+R Sbjct: 1256 CNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 1315 Query: 791 RAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADG 970 RAI LQ+AA L A P+D + +L+A K K ++ G Sbjct: 1316 RAINILQAAAALDRKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQG 1375 Query: 971 YPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCLVDGADEYLQL 1117 +L Q + N I + K + K+GE + LV+GA+E +QL Sbjct: 1376 LSGEDVLVQMHREVFNL-PIDEPMKVYLADKIGEYNFRLVEGANEMIQL 1423 Score = 91.7 bits (226), Expect = 8e-18 Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 1/97 (1%) Frame = +2 Query: 326 TTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPP 502 TT ALA+A +L+G E ++ LELNASDERGINV+R K+K+FA +G A Sbjct: 561 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS-------- 611 Query: 503 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 613 +KII LDEAD++T+DAQ ALRRTME +S RF C Sbjct: 612 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSC 648 Score = 62.8 bits (151), Expect = 4e-09 Identities = 24/50 (48%), Positives = 38/50 (76%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 334 +PWVEKYRP++++++ QE +V+ L + ++T +PH+LF GPPG GK T Sbjct: 15 KPWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>Q9UWR2:RFCL_PYRFU Replication factor C large subunit - Pyrococcus furiosus| Length = 479 Score = 95.9 bits (237), Expect = 4e-19 Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 6/218 (2%) Frame = +2 Query: 179 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH------MLFYGPPGTGKTTTAL 340 P PWVEKYRP+++ ++ +QEE + + +E+ H +L GPPG+GKTTT Sbjct: 2 PELPWVEKYRPKKLSEIVNQEEAIEKVRAWIESWLHGHPPKKKALLLAGPPGSGKTTTVY 61 Query: 341 AIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL 520 A+A + Y V+ELNASDER + ++ + + R+ KII L Sbjct: 62 ALANE------YNFEVIELNASDERTYEKISRYVQAAYTMDILGKRR--------KIIFL 107 Query: 521 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSN 700 DEAD++ + + ++ N + + + + +K L++ + N Sbjct: 108 DEADNIEPSGAKEIAKLID--KAKNPIIMAANKYWEVPKEIREKAELVEYKRLTQRDVMN 165 Query: 701 RILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 ++ I EG+T+ L ++ S GDLR AI LQ+ Sbjct: 166 ALIRILKREGITVPKEILLEIAKRSSGDLRAAINDLQT 203
>Q9V2G3:RFCL_PYRAB Replication factor C large subunit - Pyrococcus abyssi| Length = 479 Score = 94.0 bits (232), Expect = 2e-18 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 6/218 (2%) Frame = +2 Query: 179 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTGKTTTAL 340 P PWVEKYRPR++ ++ +QE+ + + +E +L GPPG+GKTTT Sbjct: 2 PEVPWVEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVY 61 Query: 341 AIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL 520 A+A + Y V+ELNASDER + + ++ + + R+ KII L Sbjct: 62 ALARE------YNFEVIELNASDERTYDKIARYVQAAYTMDILGKRR--------KIIFL 107 Query: 521 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSN 700 DEAD++ + + ++ N+ + + + R +K L++ + N Sbjct: 108 DEADNIEPSGAPEIAKLIDRAR--NPIIMAANHYWEVPKEIRDRAELVEYKRLTQRDVIN 165 Query: 701 RILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 ++ I EG+T+ L ++ + GDLR AI LQ+ Sbjct: 166 ALVRILKREGITVPKEVLVEIAKRASGDLRAAINDLQT 203
>Q58817:RFCS_METJA Replication factor C small subunit - Methanococcus jannaschii| Length = 1847 Score = 92.4 bits (228), Expect = 4e-18 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 1/170 (0%) Frame = +2 Query: 611 CNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLR 790 CNY S+II P+ SRCA FRF PL ++ ++ ++ I +EGL L L + +S+GD+R Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMR 1727 Query: 791 RAITYLQSAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIAD- 967 +AI LQ+AA L A P++ VK ++ G+F A + ++ + Sbjct: 1728 KAINVLQTAAALSDVIDDEIVYKVSSRARPEE-VKKMMELALDGKFMEARDLLYKLMVEW 1786 Query: 968 GYPVSQLLSQFLDVIVNADDIPDEHKARICRKLGEADKCLVDGADEYLQL 1117 G +L+Q I N+ DI + K + +GE D +V+GA+E +QL Sbjct: 1787 GMSGEDILNQMFREI-NSLDIDERKKVELADAIGETDFRIVEGANERIQL 1835 Score = 78.6 bits (192), Expect = 7e-14 Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 1/74 (1%) Frame = +2 Query: 395 LNASDERGINVVRTKIKDFAAVA-VGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRT 571 L+ SDERGI+V+RTK+KDFA +G P+KII LDE+D++T DAQNALRRT Sbjct: 1060 LHNSDERGIDVIRTKVKDFARTKPIGDV--------PFKIIFLDESDALTADAQNALRRT 1111 Query: 572 METYSKVTRFFFIC 613 ME YS V RF C Sbjct: 1112 MEKYSDVCRFILSC 1125 Score = 62.4 bits (150), Expect = 5e-09 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTT 334 +PWVEKYRP+ + D+ Q+E+V+ L +E +PH+LF GPPG GK T Sbjct: 7 KPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56
>A0B6D7:RFCL_METTP Replication factor C large subunit - Methanosaeta thermophila| (strain DSM 6194 / PT) (Methanothrix thermophila (strain DSM 6194 / PT)) Length = 467 Score = 91.7 bits (226), Expect = 8e-18 Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 7/218 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 355 W EKYRP+ + + + V L ++ ++ YGPPG GKT+ ALA+A + Sbjct: 4 WAEKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALASE 63 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + +ELNASD+R ++++ + V+ S R+ +++ILDEAD+ Sbjct: 64 MDWD------YIELNASDQRTAEIIKSIAGPASQVSTFSGRR--------RLVILDEADN 109 Query: 536 M--TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 + T D A + I N I +PL C +F+ + +++ + Sbjct: 110 LHGTYDRGGAAAILRVIKNATQPVILIANEYYNIEKPLRDACRGVQFRSIRAQTIASLLR 169 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAAR 823 IC EG+ + A+ ++ +S GDLR AI L++AAR Sbjct: 170 EICRSEGIECEPEAVMHIAAMSGGDLRSAINDLEAAAR 207
>Q2NH88:RFCL_METST Replication factor C large subunit - Methanosphaera stadtmanae| (strain DSM 3091) Length = 534 Score = 89.0 bits (219), Expect = 5e-17 Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 8/216 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDV---AHQEEVVRVLTNTLETADLPH--MLFYGPPGTGKTTTALAIAYQ 355 WVEKY P+++ DV A + + V N +P +L GPPG GKTT A Sbjct: 3 WVEKYAPKKLGDVLGNAKAKAQIEVWANKWSKG-VPQKPLLLMGPPGIGKTTIA-----H 56 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 L G E Y + +E+NASD+R +++++ I + A S GY K++I+DE D Sbjct: 57 LVGKE-YFSETIEVNASDKRSYDIIKSSIGE--AAQTRSLFHSGY-----KLLIMDEVDG 108 Query: 536 MT-EDAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRI 706 ++ D R ET SK + S+ + + +C +F + + ++ ++ Sbjct: 109 ISGRDDSGGARAVNETIKNSKQPIILMANDAYSKRLTSIKPKCQGIKFTKVHTNSINAQL 168 Query: 707 LHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 IC+ E + D+ AL TLS S GDLR AIT L++ Sbjct: 169 KRICAREDIEYDSEALYTLSKESNGDLRSAITSLEA 204
>Q975D4:RFCL_SULTO Replication factor C large subunit - Sulfolobus tokodaii| Length = 440 Score = 88.6 bits (218), Expect = 6e-17 Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 9/223 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 355 W KYRP+ + +V ++E+ + L +E+ + +L YGPPG GKTT A A+A Sbjct: 5 WFLKYRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARD 64 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 YK + E+NASD R +N +RT + + KG K+I+LDE D Sbjct: 65 ------YKLELFEMNASDSRNLNDIRTMAERASITGTIFGIKG-------KLILLDEVDG 111 Query: 536 MTEDAQ-NALRRTMETYSKVTRFFFICNYISR---IIEPLASRCAKFRFKPLSEDVMSNR 703 + A A+ +E +K T++ I + PL + K L++ + Sbjct: 112 LNARADAGAIDAILELINK-TKYPIILTANDPWDPSLRPLRNAVKMIELKRLTKYPLKRI 170 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 + IC E +T + AL + S+GD R AI LQ A +G Sbjct: 171 LKKICEAEKITCEDEALDFIIEQSEGDARYAINMLQGVAEGYG 213
>P75177:DPO3X_MYCPN DNA polymerase III subunit gamma/tau - Mycoplasma pneumoniae| Length = 681 Score = 88.2 bits (217), Expect = 8e-17 Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 18/222 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETADLPH-MLFYGPPGTGKTTTALAIAYQLY---- 361 +KYRP + D Q+ + R++ N + LPH +F G GTGKTT A IA + Sbjct: 7 QKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCLNW 66 Query: 362 -GPELYKAR------------VLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPP 502 G + V E++A+ + GIN +R ++ + +K Sbjct: 67 NGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKK------- 119 Query: 503 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 682 + ILDEA +T + + L +T+E F F ++I + SRC F FK ++ Sbjct: 120 --VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQIT 177 Query: 683 EDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYL 808 D++ R+ + ++E + + AL L+ ++QG LR ++ L Sbjct: 178 NDLIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLL 219
>Q8TZC5:RFCL_METKA Replication factor C large subunit - Methanopyrus kandleri| Length = 510 Score = 84.7 bits (208), Expect = 9e-16 Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 17/232 (7%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVL---TNTLETADLPH---MLFYGPPGTGKTTTALAIA 349 PWVEKYRPR +K++ +Q+E + L N +P +L +GPPGTGKT+ A A+A Sbjct: 3 PWVEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALA 62 Query: 350 YQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYK------- 508 + + V+ELNASD+R NV+ KI A+ + R Y+ Sbjct: 63 HD------FGWDVIELNASDKRTRNVIE-KIVGGASTSRSLLRMTREAGGDYEHVEGHSD 115 Query: 509 --IIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 676 ++++DE D + ED T + N + + L F+ Sbjct: 116 RVLVLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVANDPWVLPKSLRDAVRMIEFRR 175 Query: 677 LSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 L + + + IC EG+ + AL ++ ++GDLR AI L++ AR G Sbjct: 176 LRVNDIVEALRRICEREGIEYEEVALRRIAKRARGDLRAAINDLEALARPTG 227
>P47658:DPO3X_MYCGE DNA polymerase III subunit gamma/tau - Mycoplasma genitalium| Length = 597 Score = 84.7 bits (208), Expect = 9e-16 Identities = 72/298 (24%), Positives = 128/298 (42%), Gaps = 20/298 (6%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH-MLFYGPPGTGKTTTALAIAYQLY 361 Q + +KYRP K QE + ++L N + LP+ +F G GTGKTT A IA + Sbjct: 3 QVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAIN 62 Query: 362 -----------GPELYKA-------RVLELNASDERGINVVRTKIKDFAAVAVGSARKGG 487 ++ K+ ++E++A+ + GIN +R +++ +K Sbjct: 63 CLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKK-- 120 Query: 488 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 667 + ILDEA +T + L +T+E F F ++I + SRC F Sbjct: 121 -------VYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFF 173 Query: 668 FKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXX 847 FK ++ D++ R+ I +E + ++ AL ++ +SQG LR ++ L + Sbjct: 174 FKKITSDLILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKIS 233 Query: 848 XXXXXXXGAIPDDTVK-SLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVN 1018 I D K + + A SG+ A + + ++G + L + + VN Sbjct: 234 ITDVEKTFNIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVN 291
>Q5JHP1:RFCL_PYRKO Replication factor C large subunit - Pyrococcus kodakaraensis| (Thermococcus kodakaraensis) Length = 499 Score = 84.3 bits (207), Expect = 1e-15 Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 6/215 (2%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQE---EVVRVLTNTLETADLPH---MLFYGPPGTGKTTTALAIA 349 PWVEKYRPR++ ++ +QE E VR + P +L GPPG GKTTT A+A Sbjct: 5 PWVEKYRPRKLSEIVNQEKALEQVRAWVEAWLHGNPPKKKALLLAGPPGVGKTTTVYALA 64 Query: 350 YQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEA 529 + Y V+ELNASDER + ++ + + R+ K+I LDEA Sbjct: 65 NE------YGFEVIELNASDERTYEKIERYVQAAYTMDILGKRR--------KLIFLDEA 110 Query: 530 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 D++ + + ++ N+ + + ++ +K L++ + ++ Sbjct: 111 DNIEPSGAREIAKLID--KARNPIIMSANHYWEVPREIRNKAQIVEYKRLTQRDIIKALV 168 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 I EGL + L ++ + GDLR A+ LQ+ Sbjct: 169 RILKREGLEVPKEVLYEIAKRANGDLRAAVNDLQT 203
>Q5UQE8:RFCS2_MIMIV Putative replication factor C small subunit L478 - Mimivirus| Length = 370 Score = 83.6 bits (205), Expect = 2e-15 Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 23/227 (10%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPELY 376 EKYRP++ D +V+R L D+PH++ GP G+GK T + LY ++ Sbjct: 5 EKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDEDVN 64 Query: 377 KARVLELN---ASDERGINVVRTK--------------------IKDFAAVAVGSARKGG 487 R + N +S ++ I ++++ IK +A K Sbjct: 65 ILRKRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIFKTK 124 Query: 488 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 667 +K I++ +++ ++Q ALRRTME Y+K RF +CN +S+I++PL SRC F Sbjct: 125 RK---FKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFC 181 Query: 668 FKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYL 808 + + ++ + +I E + L+ + + +L+ AI +L Sbjct: 182 VPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIWFL 228
>Q9UXF6:RFCL_SULSO Replication factor C large subunit - Sulfolobus solfataricus| Length = 405 Score = 82.8 bits (203), Expect = 3e-15 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 9/223 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 355 W KYRPR +KDV +Q++ + L +E+ +++ +L +GPPG GKT A A+A+ Sbjct: 4 WFLKYRPRSLKDVENQDDAKKQLQEWIESWLNGNSNVKAVLLHGPPGVGKTVLAEALAHD 63 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 Y +LE+NASD R K++D ++A +A G K+I+LDE D Sbjct: 64 ------YNFELLEMNASDSR-------KLQDIKSIAEKAAVYGSIFGTKGKLILLDEVDG 110 Query: 536 M-TEDAQNALRRTMETYSKVTRFFFIC---NYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 + + A++ +E K T++ I + + + L ++ L + + Sbjct: 111 INVREDTGAIQGILELIEK-TKYPIIMTANDPWNPGLRELRNKAKMIELSKLGKYPLRRI 169 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 + IC E + D AL+ + S+GD R AI LQ +G Sbjct: 170 LKKICQAEKIICDDEALNYIIDSSEGDARYAINILQGIGEGYG 212
>A3CTR4:RFCL_METMJ Replication factor C large subunit - Methanoculleus marisnigri| (strain ATCC 35101 / DSM 1498 / JR1) Length = 454 Score = 82.8 bits (203), Expect = 3e-15 Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 4/214 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLE--TADLPHMLFYGPPGTGKTTTALAIAYQLYG 364 WVEKYRP+ ++DV VR++ + ++ YG PGTGKT++A A+A + Sbjct: 3 WVEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALANDM-- 60 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTE 544 V+ELNASD+R + ++ A +A G K+I+LDEAD++ Sbjct: 61 ----NWEVVELNASDQR----TKAALERVAGAGSTTASLSG---ASRKLILLDEADNLHG 109 Query: 545 DA-QNALRRTMETYSKVTR-FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 A + + +E + + I N + L + +F+ L + R+ IC Sbjct: 110 QADRGGAKAIVEIIAAAQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQIC 169 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + EG+ D AL ++ + GD+R A+ L +AA Sbjct: 170 AAEGVACDPAALDDIANRAGGDMRAAVNMLYAAA 203
>Q58294:RFCL_METJA Replication factor C large subunit - Methanococcus jannaschii| Length = 516 Score = 82.8 bits (203), Expect = 3e-15 Identities = 87/314 (27%), Positives = 137/314 (43%), Gaps = 15/314 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET---ADLPH-MLFYGPPGTGKTTTALAIAYQL 358 WVEKYRP+ +KDVA E+V L +E+ + P +L GPPG GKTT A A+A Sbjct: 4 WVEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALAND- 62 Query: 359 YGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSM 538 Y V+ELNASD+R + ++ VG A +I+LDE D + Sbjct: 63 -----YGFEVIELNASDKRNSSAIKK--------VVGHAATSSSIFGKKFLIVLDEVDGI 109 Query: 539 T--EDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEDVMSNRI 706 + EDA + ++ K + + + I L + P+ + + + Sbjct: 110 SGKEDA-GGVSELIKVIKKAKNPIILTANDAYAPSIRSLLPYVEVIQLNPVHTNSVYKVL 168 Query: 707 LHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPDD 886 I +EGL +D L ++ S GDLR AI L++ A L G + Sbjct: 169 KKIAEKEGLDVDDKTLKMIAQHSAGDLRSAINDLEALA-LSGDLSYEAAQKLPDRKREAN 227 Query: 887 TVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIVN--ADDIPDEHK----- 1045 +L V K+ + +A + N+ D P DV++ A+++P E++ Sbjct: 228 IFDALRVILKTTHYGIATTALMNV--DETP---------DVVIEWIAENVPKEYEKPEEV 276 Query: 1046 ARICRKLGEADKCL 1087 AR L +AD+ L Sbjct: 277 ARAFEYLSKADRYL 290
>Q8Q084:RFCL_METMA Replication factor C large subunit - Methanosarcina mazei| (Methanosarcina frisia) Length = 610 Score = 82.0 bits (201), Expect = 6e-15 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 7/217 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPH---MLFYGPPGTGKTTTALAIAYQ 355 W EKYRPR + DV + V+ L E + +P ++ YGP G GKT++A A+A Sbjct: 12 WAEKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGD 71 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + + V+ELNASD+R V+ GSA ++IILDEAD+ Sbjct: 72 M------EWEVIELNASDQRTAGVIEK--------IAGSAASMNTFFGGKRLIILDEADN 117 Query: 536 MTEDAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 + A R + K T I N I + + + C + +F + M + Sbjct: 118 LHGTADRGGMRAISGIIKSTLQPIILIANDIYGLTPTVRNICLEIKFGSVQSRSMVPALK 177 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 +C EG++ A+ ++ + GD R AI LQ+AA Sbjct: 178 KVCESEGVSCSQEAVLQIAENAGGDFRSAINDLQAAA 214
>P04526:DPA44_BPT4 DNA polymerase accessory protein 44 - Bacteriophage T4| Length = 319 Score = 82.0 bits (201), Expect = 6e-15 Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 13/219 (5%) Frame = +2 Query: 197 EKYRPRQVKDV---AHQEEVVRVLTNTLETADLPHMLFYGP-PGTGKTTTALAIAYQLYG 364 +KYRP + + A +E + +T+ +PH++ + P PGTGKTT A A+ + + Sbjct: 13 QKYRPSTIDECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV-- 67 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD-SMT 541 A ++ +N SD + I+ VR + +FA+ A R+ K+I++DE D S Sbjct: 68 ----NADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQ--------KVIVIDEFDRSGL 114 Query: 542 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSED------VMSN 700 ++Q LR ME YS N I II+PL SRC F +P ED M Sbjct: 115 AESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIR 174 Query: 701 RILHICSEEGLTL-DAHALSTLSTISQGDLRRAITYLQS 814 R+ IC EG+ + D ++ L + D R+ I L S Sbjct: 175 RLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDS 213
>A1RWU6:RFCL_THEPD Replication factor C large subunit - Thermofilum pendens (strain| Hrk 5) Length = 413 Score = 81.6 bits (200), Expect = 8e-15 Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 8/219 (3%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAY 352 PW EKYRP ++ DV EE + + + L YGPPG+GKT+ A A Sbjct: 10 PWTEKYRPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKTSIVHATAK 69 Query: 353 QLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 + + ++ELNASD R R ++ A+ + GY KII+LDE D Sbjct: 70 E------FSWELIELNASDVR----TREALQQRLLGALNTRSVLGYSG---KIILLDEVD 116 Query: 533 SM-TEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 + T++ L+ +E K + + + PL C FK + + + Sbjct: 117 GISTKEDAGGLQAIVELIEKSNWPIVLTANDPWDPKLRPLRDLCELIEFKKIGKRDIMKV 176 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + +ICS+EG+ LS ++ ++GDLR AI LQS A Sbjct: 177 LENICSKEGVECSREVLSAIADNAKGDLRAAINDLQSLA 215
>A2BL93:RFCL_HYPBU Replication factor C large subunit - Hyperthermus butylicus (strain| DSM 5456 / JCM 9403) Length = 484 Score = 81.6 bits (200), Expect = 8e-15 Identities = 68/224 (30%), Positives = 105/224 (46%), Gaps = 9/224 (4%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTGKTTTALAIA 349 PW+ KYRP++V+DV QEE ++ L + + LFYGP G GKT+ A A Sbjct: 6 PWIIKYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSLVEAAA 65 Query: 350 YQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEA 529 + YG EL +E+NASD R ++ I+ A +A G KII+LDE Sbjct: 66 NE-YGLEL-----IEMNASDFRR----KSDIERIAKIAATQFSLFGRK---RKIILLDEV 112 Query: 530 DSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASRCAKFRFKPLSEDVMSN 700 D ++ A + +T+ + + ++PL F LSE + Sbjct: 113 DGISGTADRGGLDAILELINITKHPIVMTANDPWDQKLKPLRDASLMVPFYRLSERYVVQ 172 Query: 701 RILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 + IC+ E + + AL ++ ++GDLR AI LQ+ A +G Sbjct: 173 VLKRICAAENIECEDEALKLIAQRAEGDLRSAINDLQAIAEGYG 216
>Q46AT6:RFCL_METBF Replication factor C large subunit - Methanosarcina barkeri (strain| Fusaro / DSM 804) Length = 642 Score = 81.3 bits (199), Expect = 1e-14 Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 7/217 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 355 W EKYRP+ +K++ ++ V+ L E D ++ +GP G GKT+TA A+A Sbjct: 7 WAEKYRPQTLKEIVGNKKAVQYLRTWAEKWLSGIPDRRAVVLHGPAGVGKTSTAHALARD 66 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 L V+ELNASD+R V+ GSA ++IILDEAD+ Sbjct: 67 L------DWEVIELNASDQRTAGVIER--------VAGSAASMNTFFGGKRLIILDEADN 112 Query: 536 MTEDAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 + A R + K T I N I + + + C + +F + M + Sbjct: 113 IHGTADRGGMRAIAGIIKNTLQPIVLIANDIYGLTPTIRNLCLEIKFGSVQSRSMVPALK 172 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 +C E + A+ ++ + GDLR AI LQ+AA Sbjct: 173 KVCESEDILCSPDAIQQIAEGAGGDLRSAINDLQAAA 209
>Q8TPU4:RFCL_METAC Replication factor C large subunit - Methanosarcina acetivorans| Length = 607 Score = 81.3 bits (199), Expect = 1e-14 Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 7/217 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPH---MLFYGPPGTGKTTTALAIAYQ 355 W EKYRPR ++DV ++ VR E + +P ++ YGP G GKT++A A+A Sbjct: 12 WAEKYRPRTLEDVVGNKKAVRDFRAWAEEWQSRIPETRAVILYGPAGIGKTSSAHALARD 71 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + V+ELNASD+R V+ GSA ++IILDEAD+ Sbjct: 72 MDWD------VIELNASDQRTAGVIEK--------IAGSAASMNTLFGSKRLIILDEADN 117 Query: 536 MTEDAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 + A R + K T I N I + + + C + +F + M + Sbjct: 118 IHGTADRGGMRAISGIIKGTLQPIVLIANDIYGLTPTIRNLCLEIKFGSVQSRSMVPALK 177 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 +C EG+ AL ++ + GD R AI LQ+AA Sbjct: 178 KVCGAEGVYCSQEALLQIAENAGGDFRSAINDLQAAA 214
>A1RSA3:RFCL_PYRIL Replication factor C large subunit - Pyrobaculum islandicum (strain| DSM 4184 / JCM 9189) Length = 423 Score = 80.9 bits (198), Expect = 1e-14 Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 23/231 (9%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTL--------------------ETADLPHMLFYG 307 PWVEKYRP+ +++ +QEE L + + E + +L G Sbjct: 4 PWVEKYRPKTFEEIVNQEEAKYTLASWICAKFKAPREFCTRWAKKKDKEIVEAKAVLLAG 63 Query: 308 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGG 487 PPG GKTT A+A ++ K ++ELNASD R +IK + A G Sbjct: 64 PPGIGKTTIVHALAREI------KYELIELNASDVR----TGERIKQVVGRGLREASLFG 113 Query: 488 YPCPPYKIIILDEADSM-TEDAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCA 658 Y K+++ DE D + ++ L +E +KV N PL Sbjct: 114 YEG---KLVLFDEVDGLHVKEDLGGLETIVEIIEIAKVPVIMTANNPYDPKFRPLRDIAL 170 Query: 659 KFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQ 811 K LSED + + IC+ EG + AL +++ S GDLR AI LQ Sbjct: 171 VINLKRLSEDDVVEVLRRICANEGAKCEEEALRSIAKSSLGDLRAAINDLQ 221
>Q5V1F7:RFCL_HALMA Replication factor C large subunit - Haloarcula marismortui| (Halobacterium marismortui) Length = 508 Score = 80.9 bits (198), Expect = 1e-14 Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 4/214 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQLYG 364 W EKYRP + +V ++ L ET D ++ YG PG GKT+ A A+A + Sbjct: 3 WTEKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALANDMEW 62 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTE 544 P +ELNASD R +V+ + A +A GG +++I+DEAD++ Sbjct: 63 P------TIELNASDSRTKDVINRVAGEAAKSGTLTAGGGG-----RRLVIMDEADNIHG 111 Query: 545 DAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 +A R + K I N + L + C F+ +S + + +C Sbjct: 112 NADRGGARAITALVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLC 171 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 +EG+ ++ AL L+ + G LR A+ LQ+ A Sbjct: 172 RQEGVEYESDALQELAEQNSGGLRGAVKDLQAIA 205
>A2SQR6:RFCL_METLZ Replication factor C large subunit - Methanocorpusculum labreanum| (strain ATCC 43576 / DSM 4855 / Z) Length = 476 Score = 80.5 bits (197), Expect = 2e-14 Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 4/210 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPHMLFYGPPGTGKTTTALAIAYQLYG 364 W EKYRP + D+ VR + + +T D +LF G PG GKT+ ALA+A + Sbjct: 3 WAEKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRPLLFTGKPGIGKTSAALALARDM-- 60 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTE 544 VLELNASD R ++ VA S+ K+II+DE D++ Sbjct: 61 ----DWEVLELNASDARTKTIIER-------VAGNSSTTTSLFGAGRKLIIIDEVDNLEG 109 Query: 545 DAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 +A R + K + I N + + + C F+ + + R+ IC Sbjct: 110 NADRGGARAIADILKEAKQPIVLIANDAYGVSDSIRRLCDPVPFRAIGVSTLQKRMKEIC 169 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYL 808 E + ALS ++ S GD+R A+ L Sbjct: 170 RFEDIACGEDALSAIAESSAGDMRTAVNML 199
>Q0W3P4:RFCL_UNCMA Replication factor C large subunit - Uncultured methanogenic| archaeon RC-I Length = 553 Score = 80.1 bits (196), Expect = 2e-14 Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 6/220 (2%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPHMLFYGPPGTGKTTTALAIAYQ 355 ++ W EKYRP + D+ + V+ L ET ++ YG PG GKT+ ALA+A+ Sbjct: 7 TRDWTEKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHD 66 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + +ELNASD R + + +I AA+A GG +++ILDEAD+ Sbjct: 67 MGWD------YIELNASDVRTKDAI-NRIAGPAAMAGTFEGTGG-----RRLVILDEADN 114 Query: 536 M----TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 + + A+ + S+ I N + + +PL + +F+ + ++ Sbjct: 115 LHGNYDRGGEAAIINVIRNASQPV--ILIANDMYAMSKPLRESALQIQFRAILSTSVAKV 172 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAAR 823 + +C+ EGL D AL ++ DLR AI LQ+AA+ Sbjct: 173 LRKVCANEGLKCDPEALMKIAE-RTNDLRSAINDLQAAAQ 211
>Q9YBS5:RFCL_AERPE Replication factor C large subunit - Aeropyrum pernix| Length = 479 Score = 79.3 bits (194), Expect = 4e-14 Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 11/233 (4%) Frame = +2 Query: 167 PLVPPSQ--PWVEKYRPRQVKDVAHQEEVVRVLTNTLET------ADLPHMLFYGPPGTG 322 P+V S PWV KYRP++V+DV +Q++ ++L + D L YGPPG G Sbjct: 2 PIVARSSRVPWVIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVG 61 Query: 323 KTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPP 502 KT+ AIA + + ++ELNASD R R+ I+ VG+A + Sbjct: 62 KTSLVEAIASE------FNLEMIELNASDYRR----RSDIERI----VGAASRKRSMFKR 107 Query: 503 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR---IIEPLASRCAKFRFK 673 +I+LDE D + + + K T + + PL F+ Sbjct: 108 GVVILLDEVDGINPREDAGGIEALLSVIKTTENPIVMTANDPWKDFLRPLREVSLMVEFR 167 Query: 674 PLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 PL+ + + IC E + + AL ++ S+GDLR AI LQ+ A +G Sbjct: 168 PLTLTHIVAVLQRICEAERIECEREALRYIAERSEGDLRSAINDLQAVAEGYG 220
>Q89A95:DPO3X_BUCBP DNA polymerase III subunit gamma - Buchnera aphidicola subsp.| Baizongia pistaciae Length = 370 Score = 78.6 bits (192), Expect = 7e-14 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 19/292 (6%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL----- 358 +K+RP+ DV Q+ +V ++N+L + H LF+G GTGKTT A +A L Sbjct: 8 KKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNCKLG 67 Query: 359 YGP----------ELYKARVLELNASDERGINVVRTKIKDFAAVAVG---SARKGGYPCP 499 P E+ + ++L D RTK++D + KG Sbjct: 68 ISPNPCRKCSNCVEVEQGNFIDLYEVDAAS----RTKVEDMKELLDNIRYLPSKG----- 118 Query: 500 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 679 +KI ++DE ++ + N L + +E + +F + +I + + SRC +F+ KP+ Sbjct: 119 RFKIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPI 178 Query: 680 SEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXX 859 + + + I +I +E +T + ALS +S S+G LR AIT + + Sbjct: 179 NLNEIVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVR 238 Query: 860 XXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVIV 1015 G + +D + +L + NK++ N++ +S F +++V Sbjct: 239 KTLGMLYEDQILYILTT-------LLNKDLKNLVLCFKYISDTHINFENILV 283
>Q8K983:DPO3X_BUCAP DNA polymerase III subunit gamma - Buchnera aphidicola subsp.| Schizaphis graminum Length = 363 Score = 78.6 bits (192), Expect = 7e-14 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 10/219 (4%) Frame = +2 Query: 200 KYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL---YGP 367 K+RP+ K + Q+ +V+ ++N + H L G G GKTT A IA L G Sbjct: 9 KWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSLNCEIGI 68 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARK---GGYPCPP---YKIIILDEA 529 R + E+GI + +I + V R+ Y P +K+ ++DE Sbjct: 69 TSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKVYLIDEV 128 Query: 530 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 ++ + NAL +T+E + +F + +I + + SRC F+ LSE+ + N + Sbjct: 129 HMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEEDIFNFLK 188 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARL 826 HI + G D AL +S + G +R A+ L+ A L Sbjct: 189 HILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHL 227
>P09122:DPO3X_BACSU DNA polymerase III subunit gamma/tau - Bacillus subtilis| Length = 563 Score = 78.2 bits (191), Expect = 9e-14 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 22/289 (7%) Frame = +2 Query: 203 YRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL---YGP- 367 +RP++ +DV QE + + L N L H LF GP GTGKT+ A A + + P Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPV 69 Query: 368 -----ELYKAR---------VLELNASDERGINVVRT---KIKDFAAVAVGSARKGGYPC 496 E + V+E++A+ G++ +R K+K FA AV Sbjct: 70 DEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVK-FAPSAV---------- 118 Query: 497 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 676 YK+ I+DE ++ A NAL +T+E + F +I + SRC +F FK Sbjct: 119 -TYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKR 177 Query: 677 LSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXX 856 ++ + R+ I E L ++ +L +++ + G +R A++ L A G Sbjct: 178 ITSQAIVGRMNKIVDAEQLQVEEGSLEIIASAAHGGMRDALSLLDQAISFSGDILKVEDA 237 Query: 857 XXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFL 1003 GA+ + L + A + ++ ++ G ++L+ + Sbjct: 238 LLITGAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMI 286
>O64301:DPA44_BPR69 DNA polymerase accessory protein 44 - Bacteriophage RB69| Length = 320 Score = 77.8 bits (190), Expect = 1e-13 Identities = 70/217 (32%), Positives = 103/217 (47%), Gaps = 13/217 (5%) Frame = +2 Query: 197 EKYRPRQVKDV---AHQEEVVRVLTNTLETADLPHMLFYGP-PGTGKTTTALAIAYQLYG 364 +KYRP + + A+ E + L + LPH++ + P PGTGKTT A A+ + Sbjct: 13 QKYRPSSIDECILPAYDHETFKSLVSK---GKLPHIILHSPSPGTGKTTVAKALCNDI-- 67 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD-SMT 541 A ++ +N SD + I+ VR + FA S G P K+I++DE D S Sbjct: 68 ----NAEMMFVNGSDCK-IDFVRGPLTAFAR----SVSMEGKP----KVIVIDEFDRSGL 114 Query: 542 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEDVMS------N 700 ++Q LR ME +S N I IIEPL SRC F +P ED +S + Sbjct: 115 AESQRHLRTFMEEFSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEEDKISMMKKMIH 174 Query: 701 RILHICSEEGLTL-DAHALSTLSTISQGDLRRAITYL 808 R++ IC E + + D ++ L + D RR I L Sbjct: 175 RMVEICKNENIEIADMKVVAALVKKNFPDFRRTIGQL 211
>Q4JAB1:RFCL_SULAC Replication factor C large subunit - Sulfolobus acidocaldarius| Length = 437 Score = 77.4 bits (189), Expect = 1e-13 Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 9/223 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 355 W KYRP+ +++V +Q+EV L +E+ +L YGPPG GKTT A A+A Sbjct: 5 WFLKYRPKSLQEVENQDEVKEELKKWIESWLNGEPTAKAVLLYGPPGVGKTTLAEALARD 64 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 YK +LE+NASD R ++D VA ++ G KII+LDE D Sbjct: 65 ------YKLELLEMNASDSR-------NLRDIKDVAERASISGSLFGIKGKIILLDEIDG 111 Query: 536 MTEDAQ-NALRRTMETYSKVTRFFFIC---NYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 + A A+ +E K T++ I + + L + K L + + Sbjct: 112 IYSRADAGAIPAILELIEK-TKYPVILTANDPWDPSLRSLRNAVKMIELKRLGKYPLKRL 170 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFG 832 + IC +E + AL + S+GD R I LQ A +G Sbjct: 171 LKRICEKEKIVCIDEALDHIIEQSEGDARYCINMLQGIAEGYG 213
>P43746:DPO3X_HAEIN DNA polymerase III subunit gamma/tau - Haemophilus influenzae| Length = 688 Score = 77.0 bits (188), Expect = 2e-13 Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 12/270 (4%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL- 358 Q K+RP+ DV QE ++ L N L+ L H LF G G GKT+ A A L Sbjct: 4 QVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLN 63 Query: 359 --YGPELYKARVLELNASDERG--INVV------RTKIKDFAAVAVGSARKGGYPCPPYK 508 +G E + E+G I+++ RTK++D + K +K Sbjct: 64 CVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKP--VVGRFK 121 Query: 509 IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSED 688 + ++DE ++ + NAL +T+E + +F ++ + SRC +F K L E Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDET 181 Query: 689 VMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXX 868 +S + HI ++E + + AL L+ +QG +R +++ A + Sbjct: 182 QISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNML 241 Query: 869 GAIPDDTVKSLLVACKSGEFDVANKEVSNI 958 G + D+ +L A G ++ + + + Sbjct: 242 GLLDDNYSVDILYALHQGNGELLMRTLQRV 271
>Q8ZYK3:RFCL_PYRAE Replication factor C large subunit - Pyrobaculum aerophilum| Length = 422 Score = 76.6 bits (187), Expect = 3e-13 Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 23/231 (9%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTL--------------------ETADLPHMLFYG 307 PW+EKYRP+ ++ +QEE L + + E A+ +L G Sbjct: 4 PWIEKYRPKSFAEIVNQEEAKYTLASWICLKFRAPKEFCTRWAKKRDKEVAEAKAILLAG 63 Query: 308 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGG 487 PPG GKTT A+A ++ + ++ELNASD R + +R I + +G Sbjct: 64 PPGVGKTTLVHALAREI------RYELIELNASDVRTADRLRQVIGRGLRESSLFGFEG- 116 Query: 488 YPCPPYKIIILDEADSM-TEDAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCA 658 K+++ DE D + ++ + L +E +K+ N PL Sbjct: 117 ------KMVLFDEVDGLHVKEDKGGLEEIIEIIETAKIPIIMTANNPYDPKFRPLRDISL 170 Query: 659 KFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQ 811 K LSE+ + + IC+ EG + AL +++ S GDLR AI LQ Sbjct: 171 VVNLKRLSEEEVVEVLRRICTSEGAKCEEEALRSIAKSSMGDLRAAINDLQ 221
>P74876:DPO3X_SALTY DNA polymerase III subunit tau - Salmonella typhimurium| Length = 642 Score = 76.6 bits (187), Expect = 3e-13 Identities = 73/294 (24%), Positives = 119/294 (40%), Gaps = 18/294 (6%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQLY 361 Q K+RP+ DV QE V+ L N L + H LF G G GKT+ A +A L Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Query: 362 GP---------------ELYKARVLELNASDERGINVVRTKIKDFAAVA--VGSARKGGY 490 E+ + R ++L D RTK++D + V A G Sbjct: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----RTKVEDTRDLLDNVQYAPARGR 119 Query: 491 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 670 +K+ ++DE ++ + NAL +T+E +F ++ + SRC +F Sbjct: 120 ----FKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHL 175 Query: 671 KPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXX 850 K L + + +++ HI +EE + + AL LS + G LR A++ A Sbjct: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQ 235 Query: 851 XXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVI 1012 G + DD SL+ A + ++ A G LL + L ++ Sbjct: 236 AVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLL 289
>P06710:DPO3X_ECOLI DNA polymerase III subunit tau - Escherichia coli| Length = 643 Score = 76.3 bits (186), Expect = 3e-13 Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 18/294 (6%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQLY 361 Q K+RP+ DV QE V+ L N L + H LF G G GKT+ A +A L Sbjct: 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 Query: 362 GP---------------ELYKARVLELNASDERGINVVRTKIKDFAAVA--VGSARKGGY 490 E+ + R ++L D RTK++D + V A G Sbjct: 64 CETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----RTKVEDTRDLLDNVQYAPARGR 119 Query: 491 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 670 +K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F Sbjct: 120 ----FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 Query: 671 KPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXX 850 K L + + +++ HI +EE + + AL L+ ++G LR A++ A Sbjct: 176 KALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 235 Query: 851 XXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYPVSQLLSQFLDVI 1012 G + DD SL+ A + ++ A G LL + L ++ Sbjct: 236 AVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLL 289
>Q3ISA5:RFCL_NATPD Replication factor C large subunit - Natronomonas pharaonis (strain| DSM 2160 / ATCC 35678) Length = 483 Score = 74.3 bits (181), Expect = 1e-12 Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 4/215 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQLYG 364 W E YRP + +V + + + ++ +G PG GKT+ A A+A + Sbjct: 4 WTEAYRPTTLSEVRGNNKARDAFEEWAKAWEDHREAVILHGSPGVGKTSAAHALANDMGW 63 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTE 544 P VLE+NASD R + +I+ FA A +A GG ++IILDEAD++ + Sbjct: 64 P------VLEMNASDAR----TKDEIERFAGRAASNATLGG----GRQLIILDEADNLHQ 109 Query: 545 --DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 D A T I N + L S C F+ +S + + IC Sbjct: 110 HKDRGGAAAMTRLVKDATQPVVLIANDYYEMSSGLRSACRDVEFRDVSARSIVPVLRDIC 169 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQSAAR 823 +E + D L ++ ++GDLR A+ LQ+ R Sbjct: 170 RQENVEFDEDVLQEIAEANRGDLRGAVKDLQARER 204
>Q6M0E9:RFCL_METMP Replication factor C large subunit - Methanococcus maripaludis| Length = 486 Score = 73.9 bits (180), Expect = 2e-12 Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 12/285 (4%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVRVLTNTLET----ADLPHMLFYGPPGTGKTTTALAIAY 352 + WVEKYRP+ + DVA + + L +E+ + +L GPPG+GKTT A AIA Sbjct: 2 EEWVEKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIAN 61 Query: 353 QLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 Y V+ELNASD+R KD + VG+A +I+LDE D Sbjct: 62 D------YAFDVIELNASDKRN--------KDVISQVVGTAATSKSLTGRRTLIVLDEVD 107 Query: 533 SMT-EDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 ++ D + + ++ + + + L + + + + Sbjct: 108 GLSGNDDRGGVAEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPV 167 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPD 883 + I +EG +D + +++ S GDLR AI LQS A +PD Sbjct: 168 LRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLA------TGGSIEIEDAKELPD 221 Query: 884 -DTVKSLL----VACKSGEFDVANKEVSNIIADGYPVSQLLSQFL 1003 D+ KS+ + K+ +D+A ++ D + + +S+ L Sbjct: 222 RDSEKSIFDAMRIIMKTTHYDIATSATRDVKEDIGTIEEWISENL 266
>Q12TX1:RFCL_METBU Replication factor C large subunit - Methanococcoides burtonii| (strain DSM 6242) Length = 497 Score = 73.9 bits (180), Expect = 2e-12 Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 9/219 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLE-----TADLPHMLFYGPPGTGKTTTALAIAYQ 355 WVEKYRP+ + D+ ++ V + + T + ++ +GP G GKT+ A A+A Sbjct: 7 WVEKYRPQSLTDIVGNKKSVVDMREWAQSWLSGTPEKRAIILHGPAGVGKTSAAHALARD 66 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVA--VGSARKGGYPCPPYKIIILDEA 529 L +ELNASD+R V+ + ++ G+ K ++IILDEA Sbjct: 67 L------DWETIELNASDQRTAGVIERVAGSASKMSSLTGTTAK--------RLIILDEA 112 Query: 530 DSMTEDAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 D++ +A R + K T I N + + + S C + +F + M Sbjct: 113 DNIHGNADRGGARAIGGIIKNTDQPIVLIANDLYGLTPSVRSLCIELKFNSVQGRSMIPA 172 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + IC EE + L L+ + GDLR AI LQ+ A Sbjct: 173 MKRICVEEKIMCGVGVLEKLAESAGGDLRSAIKDLQAVA 211
>Q9HPI4:RFCL_HALSA Replication factor C large subunit - Halobacterium salinarium| (Halobacterium halobium) Length = 471 Score = 73.9 bits (180), Expect = 2e-12 Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 4/214 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPHMLFYGPPGTGKTTTALAIAYQLYG 364 W EKYRP + +V + L ET ++ +G PG GKT+ A A+A Sbjct: 4 WTEKYRPASLSEVRGNDTARDALAEWAETWPDHREAVVVHGSPGIGKTSAAHALANDAGW 63 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSM-- 538 V+ELNASD+R +VV + A + GG K+++LDEAD++ Sbjct: 64 D------VVELNASDQRTADVVERVAGEAARSGTLTGGSGG-----RKLVLLDEADNLHG 112 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 D + T + N + L S C + F+ +S+ + + +C Sbjct: 113 NIDRGGSAAITRLVDDAPQPIVLVANEYYEMSSSLRSACREIEFRDVSKRSIVPVLRDVC 172 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 E +T + AL+ ++ + GDLR A+ LQ+ A Sbjct: 173 RREDVTYEEDALAAIAEQNAGDLRSAVNDLQALA 206
>O29072:RFCL_ARCFU Replication factor C large subunit - Archaeoglobus fulgidus| Length = 479 Score = 73.6 bits (179), Expect = 2e-12 Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 9/219 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVV-RVL--TNTLETADLPHMLFYGPPGTGKTTTALAIAYQLY 361 WVEKYRP+ +++V + ++ RV+ + + P +L GPPG GKT+ ALA+A + Sbjct: 3 WVEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKP-LLLAGPPGVGKTSLALALANTM- 60 Query: 362 GPELYKARVLELNASDERGINVVRTKIKD--FAAVAVGSARKGGYPCPPYKIIILDEADS 535 G E +ELNASD+R V+ + + F K+IILDE D+ Sbjct: 61 GWE-----AVELNASDQRSWRVIERIVGEGAFNETISDEGEFLSSRIGKLKLIILDEVDN 115 Query: 536 M--TEDA--QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNR 703 + ED + AL R ++ I N ++ L + C FK L++ ++ Sbjct: 116 IHKKEDVGGEAALIRLIKR-KPAQPLILIANDPYKLSPELRNLCEMINFKRLTKQQVARV 174 Query: 704 ILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + I +EG+ +D L ++ + GDLR AI Q+ A Sbjct: 175 LERIALKEGIKVDKSVLLKIAENAGGDLRAAINDFQALA 213
>P57553:DPO3X_BUCAI DNA polymerase III subunit gamma - Buchnera aphidicola subsp.| Acyrthosiphon pisum (Acyrthosiphon pisum symbiotic bacterium) Length = 361 Score = 71.2 bits (173), Expect = 1e-11 Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 10/238 (4%) Frame = +2 Query: 200 KYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQLY---GP 367 K+RP+ +D+ Q+ +V ++N L + H L G G GKTT A +A L G Sbjct: 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSLNCQNGI 68 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARK---GGYPCP---PYKIIILDEA 529 R + E+G+ + +I + V R+ Y P +K+ ++DE Sbjct: 69 TSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKVYLIDEV 128 Query: 530 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 ++ + NAL +T+E + +F + RI + + SRC F+ + +SE+ + + Sbjct: 129 HMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIISEEKIFKFLK 188 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLFGXXXXXXXXXXXXGAIPD 883 +I +E + D ++L ++ + G +R A+ L+ A L G +P+ Sbjct: 189 YILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTDMLGLLPE 246
>O26342:RFCL_METTH Replication factor C large subunit - Methanobacterium| thermoautotrophicum Length = 479 Score = 69.3 bits (168), Expect = 4e-11 Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 7/217 (3%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPH--MLFYGPPGTGKTTTALAIAYQL 358 W EKYRP +V ++V+ + ++ A P +L GPPGTGKTT A I + Sbjct: 3 WTEKYRPGSFDEVVGNQKVIAEIKEWIKAWKAGKPQKPLLLVGPPGTGKTTLAHIIGKEF 62 Query: 359 YGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSM 538 + LELNASD R + + + SA + + K+IILDE D + Sbjct: 63 -------SDTLELNASDRRSQDAL------MRSAGEASATRSLFN-HDLKLIILDEVDGI 108 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNY---ISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 + + + K +R + S+ ++ + RC + + ++ + Sbjct: 109 HGNEDRGGVQAINRIIKESRHPMVLTANDPYSKRLQSIKPRCRVLNLRKVHTSSIAAALR 168 Query: 710 HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 IC EG+ L L+ S+GDLR AI L++ A Sbjct: 169 RICRAEGIECPDDVLRELAKRSRGDLRSAINDLEAMA 205
>P63975:DPO3X_MYCTU DNA polymerase III subunit gamma/tau - Mycobacterium tuberculosis| Length = 578 Score = 69.3 bits (168), Expect = 4e-11 Identities = 83/319 (26%), Positives = 130/319 (40%), Gaps = 40/319 (12%) Frame = +2 Query: 200 KYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL---YGP 367 KYRP +V QE V L+ L+ + H LF GP G GKT++A +A L GP Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP 65 Query: 368 ELYKARV-----------------LELNASDERGINVVRTKIKDFAAVAVGSARKGGYPC 496 V +EL+A+ G++ R +++D A A +R Sbjct: 66 TANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTR-ELRDRAFYAPVQSR------ 118 Query: 497 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 676 Y++ I+DEA +T NAL + +E + F F +++ + SR + F+ Sbjct: 119 --YRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRL 176 Query: 677 LSEDVMSNRILHICSEEGLTLD---------------AHALSTLSTISQGDLRRAITYLQ 811 L M + IC +EG+ +D LS L + G +TY + Sbjct: 177 LPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTR 236 Query: 812 SAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYP----V 979 A L G A+ DD V + L AC + A + ++I G+ Sbjct: 237 -ALGLLGVTDV---------ALIDDAVDA-LAACDAAALFGA---IESVIDGGHDPRRFA 282 Query: 980 SQLLSQFLDVIVNADDIPD 1036 + LL +F D+IV +PD Sbjct: 283 TDLLERFRDLIV-LQSVPD 300
>P63976:DPO3X_MYCBO DNA polymerase III subunit gamma/tau - Mycobacterium bovis| Length = 578 Score = 69.3 bits (168), Expect = 4e-11 Identities = 83/319 (26%), Positives = 130/319 (40%), Gaps = 40/319 (12%) Frame = +2 Query: 200 KYRPRQVKDVAHQEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQL---YGP 367 KYRP +V QE V L+ L+ + H LF GP G GKT++A +A L GP Sbjct: 6 KYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP 65 Query: 368 ELYKARV-----------------LELNASDERGINVVRTKIKDFAAVAVGSARKGGYPC 496 V +EL+A+ G++ R +++D A A +R Sbjct: 66 TANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTR-ELRDRAFYAPVQSR------ 118 Query: 497 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 676 Y++ I+DEA +T NAL + +E + F F +++ + SR + F+ Sbjct: 119 --YRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRL 176 Query: 677 LSEDVMSNRILHICSEEGLTLD---------------AHALSTLSTISQGDLRRAITYLQ 811 L M + IC +EG+ +D LS L + G +TY + Sbjct: 177 LPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYTR 236 Query: 812 SAARLFGXXXXXXXXXXXXGAIPDDTVKSLLVACKSGEFDVANKEVSNIIADGYP----V 979 A L G A+ DD V + L AC + A + ++I G+ Sbjct: 237 -ALGLLGVTDV---------ALIDDAVDA-LAACDAAALFGA---IESVIDGGHDPRRFA 282 Query: 980 SQLLSQFLDVIVNADDIPD 1036 + LL +F D+IV +PD Sbjct: 283 TDLLERFRDLIV-LQSVPD 300
>Q9HIP7:RFCL_THEAC Replication factor C large subunit - Thermoplasma acidophilum| Length = 418 Score = 68.6 bits (166), Expect = 7e-11 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 27/237 (11%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET--ADLPH---MLFYGPPGTGKTTTALAIAYQ 355 W +KYRP+ + DV E+ + +T +E+ +P ++ YG GTGKTTTA AIA Sbjct: 4 WADKYRPKNIDDVILNSEIRKQITEWIESWKEGIPKKRSLILYGSQGTGKTTTAYAIAGT 63 Query: 356 LYGPELYKARVLELNASDERGINVVR---TKIKDFAAVAVGSARKGGYPCPPYKIIILDE 526 P V+E+NASD+R + +R + + V SA++ P K+I++DE Sbjct: 64 FGVP------VVEMNASDQRNRDSMRGTALMASLYGDLFVESAKR------PSKVILIDE 111 Query: 527 ADSMTEDA-------------QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 667 AD+M E +N+ + T + + F NY S +I + K Sbjct: 112 ADNMFERGGDTGGIYELSKIIKNSANPIVITMNDIFE-FRKKNYASDVISASLTIEMKQY 170 Query: 668 FKPLSEDV------MSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + L ++ + R++ I EG TL + + + D+R I L+++A Sbjct: 171 GRKLDKNYNEFRRNIKARLIFILKNEGYTLPDQVVDRIIDRNMPDIRSMINDLEASA 227
>P60373:RFCL_NANEQ Replication factor C large subunit - Nanoarchaeum equitans| Length = 430 Score = 68.6 bits (166), Expect = 7e-11 Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 11/220 (5%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH----MLFYGPPGTGKTTTALAIAYQ 355 P KYRP+ + +V +QE+ ++L + + + +L YGPPGTGKT++ A+A + Sbjct: 32 PLFIKYRPKTLDEVENQEQAKQILRDYVINYKKKYKGKALLLYGPPGTGKTSSVYALANE 91 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 L G E VLE+NASDER + VG A KG +II++DE D Sbjct: 92 L-GYE-----VLEVNASDERDAIHIHH--------IVGEASKGKPLFHKGRIILVDEVDG 137 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR-------FKPLSEDVM 694 ++ + K + + IC +P + K R FK LS + Sbjct: 138 LSGKEDRGGVGALVNIIKQSSWPIICT----ANDPWDQKLKKLREISIMVEFKRLSPKHV 193 Query: 695 SNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 N + I + E + + L ++ S GDLR AI L++ Sbjct: 194 YNVLKKIVTNEKIKISDKILWDIAYKSGGDLRAAINDLET 233
>Q9USQ1:CTF18_SCHPO Chromosome transmission fidelity protein 18 - Schizosaccharomyces| pombe (Fission yeast) Length = 960 Score = 68.2 bits (165), Expect = 9e-11 Identities = 73/260 (28%), Positives = 109/260 (41%), Gaps = 48/260 (18%) Frame = +2 Query: 176 PPSQP-WVEKYRPRQVKDVAHQEEVVRV-----------------------------LTN 265 P SQ WV+ YRP+ +D+ E V R TN Sbjct: 347 PQSQKLWVDTYRPQLFRDLLGDERVHRAAMHWIKAWDPCVFGKSRLQPSKSMRFNPRFTN 406 Query: 266 TLETADLPH---MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRT 436 +D P M+ G G GKTT A IA+Q YK VLE+NASD+R + V Sbjct: 407 ITSDSDRPDKRIMMLTGLAGAGKTTLAHVIAHQAG----YK--VLEINASDDRTAHTVHE 460 Query: 437 KIKDFAAVAVGSARK------------GGYPCPPYKIIILDEADSM-TEDAQNALRRTME 577 K+ +A++ SA GG P ++ L E+D TE +Q + + Sbjct: 461 KVS--SAISNHSALSSQPTCVIVDEIDGGDPAFVRALLSLLESDEKATEYSQAGNSKKKK 518 Query: 578 TYSKVTR-FFFICNYI-SRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHA 751 + K+ R ICN + + + PL F+P + + R+ IC E + +D+ + Sbjct: 519 KFKKLCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENIAVDSRS 578 Query: 752 LSTLSTISQGDLRRAITYLQ 811 L+ L+ I D+R I LQ Sbjct: 579 LTLLTDIYNSDIRSCINSLQ 598
>O60182:RFC1_SCHPO Replication factor C subunit 1 - Schizosaccharomyces pombe (Fission| yeast) Length = 934 Score = 67.8 bits (164), Expect = 1e-10 Identities = 67/237 (28%), Positives = 100/237 (42%), Gaps = 25/237 (10%) Frame = +2 Query: 179 PSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH-----------------MLFYG 307 PSQ W KY P +KD+ + VV+ L L+ +L G Sbjct: 357 PSQIWTSKYAPTSLKDICGNKGVVQKLQKWLQDYHKNRKSNFNKPGPDGLGLYKAVLLSG 416 Query: 308 PPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTK---IKDFAAVAVGSAR 478 PPG GKTT A +A +L VLELNASD R ++ + + D ++A Sbjct: 417 PPGIGKTTAAHLVA------KLEGYDVLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGT 470 Query: 479 KGGYPCPPYK---IIILDEADSMTEDAQNALRR-TMETYSKVTRFFFICNYISRI-IEPL 643 K P K ++I+DE D M+ + + + M + ICN + + PL Sbjct: 471 KAN-PVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKKSMIPIICICNDRAHPKLRPL 529 Query: 644 ASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 RF+ + M +RI+ I EGL L A+ L +Q D+R+ I L + Sbjct: 530 DRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLST 586
>Q97BC2:RFCL_THEVO Replication factor C large subunit - Thermoplasma volcanium| Length = 420 Score = 60.8 bits (146), Expect = 1e-08 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 37/247 (14%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLE-----TADLPHMLFYGPPGTGKTTTALAIAYQ 355 W +KYRP++++D+ EE+ + + + ++ + ++ YG G+GKT+ A AIA Sbjct: 3 WADKYRPKRIEDLIVSEEIRQKIQSWIDAWEEGSPKKRALILYGVQGSGKTSAAYAIAGT 62 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPC-PPYKIIILDEAD 532 P V+E+NAS++R R +K A +A A G P K+I++DEAD Sbjct: 63 FGLP------VVEMNASEQRN----RESMKATALMASLYADLGASDFRKPSKVILIDEAD 112 Query: 533 SMTE---------------------DAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 649 ++ E + +N + TM + + F NY S +I + Sbjct: 113 NIFESNNPKRGGDTGGVYELSKIVKETRNPVIITMNDFYE----FRKKNYSSEVI----N 164 Query: 650 RCAKFRFKPLSEDV----------MSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAI 799 FKP + + + NRI I ++EG +L ++++ + D+R I Sbjct: 165 NSESIEFKPYARRLDRNYNEFKKNVRNRIKWIINQEGFSLPDDIINSIIDKNAPDIRSII 224 Query: 800 TYLQSAA 820 +++AA Sbjct: 225 NDVEAAA 231
>Q18GQ9:RFCL_HALWD Replication factor C large subunit - Haloquadratum walsbyi (strain| DSM 16790) Length = 516 Score = 60.5 bits (145), Expect = 2e-08 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 4/212 (1%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--MLFYGPPGTGKTTTALAIAYQLYG 364 W E+YRP + V E+ D H ++ +G PG GKT+ A A+A + G Sbjct: 4 WTERYRPTTLSAVRGNNAARDEFIEWAESWDDHHESVVLHGAPGVGKTSAAHALASDM-G 62 Query: 365 PELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTE 544 E +ELNASD+R +V+ ++ AA A ++II+DEAD++ Sbjct: 63 WE-----TVELNASDQRTSDVIE-RLAGRAAKNATLAGAVSGTTSTRQLIIMDEADNIHY 116 Query: 545 DAQNALRRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 ++ + T K I N + L + F+ +S + + +I Sbjct: 117 QYDRGGKQAVTTLLKDANQPIVLIANEYYDMSRGLRNAAQDIEFRDISARSIVPVLRNIL 176 Query: 719 SEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 +E + + AL ++ ++ GDLR AI LQ+ Sbjct: 177 RKENIEFEEAALKQIAEVNSGDLRAAIKDLQT 208
>P38630:RFC1_YEAST Replication factor C subunit 1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 861 Score = 58.2 bits (139), Expect = 9e-08 Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 28/236 (11%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----------------LPHMLFYGPPGT 319 W KY P ++ V + V L N L + + YGPPG Sbjct: 298 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI 357 Query: 320 GKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGY--- 490 GKTT A +A +L +LE NASD R ++ +K+ A+ + GY Sbjct: 358 GKTTAAHLVAQEL------GYDILEQNASDVRSKTLLNAGVKN----ALDNMSVVGYFKH 407 Query: 491 ------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-TRFFFICNYIS-RIIEPLA 646 + +II+DE D M+ + + + + K T ICN + + P Sbjct: 408 NEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFD 467 Query: 647 SRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQS 814 C +F+ + + +R++ I E LD + + L ++GD+R+ I L + Sbjct: 468 RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 523
>P49956:CTF18_YEAST Chromosome transmission fidelity protein 18 - Saccharomyces| cerevisiae (Baker's yeast) Length = 741 Score = 57.0 bits (136), Expect = 2e-07 Identities = 68/262 (25%), Positives = 103/262 (39%), Gaps = 52/262 (19%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTL-------------------ETADLPH------- 292 WVEK+RP++ D+ E+ R + L E +D+ Sbjct: 116 WVEKWRPKKFLDLVGNEKTNRRMLGWLRQWTPAVFKEQLPKLPTEKEVSDMELDPLKRPP 175 Query: 293 ---MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDF---- 451 +L +GPPG GKT+ A IA Q V E+NASDER +V+ KI + Sbjct: 176 KKILLLHGPPGIGKTSVAHVIAKQ------SGFSVSEINASDERAGPMVKEKIYNLLFNH 229 Query: 452 -----AAVAVGSARKGGYPCPPYKIIILDEADSMTED--AQNAL---------RRTMETY 583 V G +I++ D M D A N L ++ + Sbjct: 230 TFDTNPVCLVADEIDGSIESGFIRILV----DIMQSDIKATNKLLYGQPDKKDKKRKKKR 285 Query: 584 SKVTRFFFIC---NYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHAL 754 SK+ IC N + +E L C K S+ + R+ IC +E + + A+ Sbjct: 286 SKLLTRPIICICNNLYAPSLEKLKPFCEIIAVKRPSDTTLLERLNLICHKENMNIPIKAI 345 Query: 755 STLSTISQGDLRRAITYLQSAA 820 + L ++QGD+R I LQ A Sbjct: 346 NDLIDLAQGDVRNCINNLQFLA 367
>P37540:HOLB_BACSU DNA polymerase III subunit delta' - Bacillus subtilis| Length = 329 Score = 55.5 bits (132), Expect = 6e-07 Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 19/177 (10%) Frame = +2 Query: 236 QEEVVRVLTNTLETADLPHM-LFYGPPGTGKTTTALAIAYQLYGPE-------------- 370 Q V+++L N++E L H LF G GTGK AL +A + E Sbjct: 12 QPRVMKLLYNSIEKDRLSHAYLFEGKKGTGKLDAALLLAKSFFCLEGGAEPCESCRNCKR 71 Query: 371 LYKARVLELNASDERGINVVRTKIK----DFAAVAVGSARKGGYPCPPYKIIILDEADSM 538 + +L+ G+++ + +I+ +F+ + S +K + I+ AD M Sbjct: 72 IESGNHPDLHLVQPDGLSIKKAQIQALQEEFSKTGLESHKK---------LYIISHADQM 122 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL 709 T +A N+L + +E +K T I R+++ + SRC F+PL + +R++ Sbjct: 123 TANAANSLLKFLEEPNKDTMAVLITEQPQRLLDTIISRCQTLPFQPLQPKAIEDRLI 179
>P35600:RFC1_DROME Replication factor C subunit 1 - Drosophila melanogaster (Fruit fly)| Length = 986 Score = 54.7 bits (130), Expect = 1e-06 Identities = 54/241 (22%), Positives = 93/241 (38%), Gaps = 35/241 (14%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEV---VRVLTNTLETADLPH----------------------- 292 WV+K++P +K++ Q V L N L + H Sbjct: 423 WVDKHKPTSIKEIVGQAGAASNVTKLMNWLSKWYVNHDGNKKPQRPNPWAKNDDGSFYKA 482 Query: 293 MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGS 472 L GPPG GKTTTA + +L +E NASD R + +KD + + + Sbjct: 483 ALLSGPPGIGKTTTATLVVKEL------GFDAVEFNASDTRS----KRLLKDEVSTLLSN 532 Query: 473 ARKGGY------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR-- 628 GY ++I+DE D M + + + K + IC R Sbjct: 533 KSLSGYFTGQGQAVSRKHVLIMDEVDGMAGNEDRGGMQELIALIKDSSIPIICMCNDRNH 592 Query: 629 -IIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITY 805 I L + C RF+ + + +I+ IC +E + + + + + D+R++I + Sbjct: 593 PKIRSLVNYCYDLRFQRPRLEQIKGKIMSICFKEKVKISPAKVEEIIAATNNDIRQSINH 652 Query: 806 L 808 + Sbjct: 653 I 653
>P42425:LON2_BACSU ATP-dependent protease La homolog - Bacillus subtilis| Length = 552 Score = 54.7 bits (130), Expect = 1e-06 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 17/149 (11%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL- 358 S+P EK RP+ KD+ QE+ ++ L L + H++ YGPPG GKT A + + Sbjct: 56 SEPLSEKVRPKSFKDIVGQEDGIKALKAALCGPNPQHVIVYGPPGVGKTAAARLVLEEAK 115 Query: 359 ---YGPELYKARVLELNAS----DERGI-NVVRTKIKDFAAVAVGSARKGGYPCPPY--- 505 P +A +EL+A+ DERGI + + + D G+ + G P P Sbjct: 116 KHKQSPFKEQAVFVELDATTARFDERGIADPLIGSVHDPIYQGAGAMGQAGIPQPKQGAV 175 Query: 506 -----KIIILDEADSMTEDAQNALRRTME 577 ++ +DE + N + + +E Sbjct: 176 THAHGGVLFIDEIGELHPIQMNKMLKVLE 204
>P35601:RFC1_MOUSE Replication factor C subunit 1 - Mus musculus (Mouse)| Length = 1131 Score = 53.5 bits (127), Expect = 2e-06 Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 33/236 (13%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQE-------EVVRVLTNTLET--------------------ADLP 289 WV+KY+P +K++ Q+ +++R L N ++ + Sbjct: 570 WVDKYKPASLKNIIGQQGDQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLASKDDGSSFK 629 Query: 290 HMLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFA--AVA 463 L GPPG GKTTTA + +L +ELNASD R N ++ + + Sbjct: 630 AALLSGPPGVGKTTTASLVCQEL------GYSYVELNASDTRSKNSLKAVVAESLNNTSI 683 Query: 464 VGSARKGGYPCPPYK-IIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR---I 631 G G P + +I+DE D M + + + K T+ IC R Sbjct: 684 KGFYTSGAAPSVSARHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPK 743 Query: 632 IEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAI 799 I L C RF+ + + + +L I +EGL + A++ + + D+R+ + Sbjct: 744 IRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPPAMNEIILGANQDVRQVL 799
>Q2JTJ1:RUVB2_SYNJA Holliday junction ATP-dependent DNA helicase ruvB 2 - Synechococcus| sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) Length = 370 Score = 53.1 bits (126), Expect = 3e-06 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 5/103 (4%) Frame = +2 Query: 155 GEMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGT 319 G + P PS+ E RPR + + Q E+ VL+ + A L H+LFYGPPG Sbjct: 37 GLLQPQAHPSEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARGEPLDHLLFYGPPGL 96 Query: 320 GKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKD 448 GKTT A +A ++ G Y L + + +VR K D Sbjct: 97 GKTTVAAVLAAEM-GSRFYMTTAPALESPRDIAGYLVRLKQGD 138
>Q9WYX8:Y508_THEMA UPF0189 protein TM_0508 - Thermotoga maritima| Length = 599 Score = 52.0 bits (123), Expect = 7e-06 Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 3/218 (1%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVVR---VLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 +P E RP+ +D Q+ + +L TL+T ++ + YGPPG+GKT+ + Sbjct: 6 KPLSELLRPKDFEDFVGQDHIFGNKGILRRTLKTGNMFSSILYGPPGSGKTSVFSLLKRY 65 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 G +Y +S G++ ++ +K + RK G ++ LDE Sbjct: 66 FNGEVVYL-------SSTVHGVSEIKNVLKRGEQL-----RKYGKKL----LLFLDEIHR 109 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHI 715 + ++ Q L +E V N I+ L SRC FK LS++ + + Sbjct: 110 LNKNQQMVLVSHVERGDIVLVATTTENPSFVIVPALLSRCRILYFKKLSDEDLMKILKKA 169 Query: 716 CSEEGLTLDAHALSTLSTISQGDLRRAITYLQSAARLF 829 + L+ + S+GD R+ + L+ + F Sbjct: 170 TEVLNIDLEESVEKAIVRHSEGDARKLLNTLEIVHQAF 207
>Q50739:Y2559_MYCTU Uncharacterized AAA domain-containing protein Rv2559c/MT2636 -| Mycobacterium tuberculosis Length = 452 Score = 52.0 bits (123), Expect = 7e-06 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 8/219 (3%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRV---LTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 358 P + RP + +V Q+ ++ L +E + + ++ YGPPG+GKTT A I+ Sbjct: 30 PLAVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPPGSGKTTLAALISQA- 88 Query: 359 YGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSM 538 R E ++ G+ VR I++ + + ++ +DE Sbjct: 89 ------TGRRFEALSALSAGVKEVRAVIENSRKALLHGEQ---------TVLFIDEVHRF 133 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL-SEDVMSNRILHI 715 ++ Q+AL +E + N ++ PL SR + +PL +ED + I Sbjct: 134 SKTQQDALLSAVEHRVVLLVAATTENPSFSVVAPLLSRSLILQLRPLTAEDTRAVVQRAI 193 Query: 716 CSEEGL----TLDAHALSTLSTISQGDLRRAITYLQSAA 820 GL + A+ L ++ GD RRA+T L+ AA Sbjct: 194 DDPRGLGRAVAVAPEAVDLLVQLAAGDARRALTALEVAA 232
>Q6L0P4:RFCL_PICTO Replication factor C large subunit - Picrophilus torridus| Length = 410 Score = 52.0 bits (123), Expect = 7e-06 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 6/124 (4%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTLET-----ADLPHMLFYGPPGTGKTTTALAIAYQ 355 W +KYRP + ++ + + + ++ ++ YG PGTGKTTTA IA Sbjct: 3 WADKYRPVDISELIMPSDELNSIIRWADSWRNNEVIKKSLILYGDPGTGKTTTATVIANY 62 Query: 356 LYGPELYKARVLELNASDERGI-NVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 L P ++E+NASDER ++ R + + S R+ P ++I++DEAD Sbjct: 63 LNVP------LIEMNASDERNADSMKRVALMSSLYSDLLSERR-----IPDRLILIDEAD 111 Query: 533 SMTE 544 ++ E Sbjct: 112 NIFE 115
>P35251:RFC1_HUMAN Replication factor C subunit 1 - Homo sapiens (Human)| Length = 1148 Score = 52.0 bits (123), Expect = 7e-06 Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 39/242 (16%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQE-------EVVRVLTNTLETA--DLPHM---------------- 295 WV+KY+P +K + Q+ +++R L N +++ D H Sbjct: 586 WVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAAKFGKFSGKDDGSSFK 645 Query: 296 --LFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVR---------TKI 442 L GPPG GKTTTA + +L +ELNASD R + ++ T I Sbjct: 646 AALLSGPPGVGKTTTASLVCQEL------GYSYVELNASDTRSKSSLKAIVAESLNNTSI 699 Query: 443 KDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 622 K F + S+ + +I+DE D M + + + K T+ IC Sbjct: 700 KGFYSNGAASSVSTKH------ALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCN 753 Query: 623 SR---IIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRR 793 R I L C RF+ + + ++ I +EGL + A++ + + D+R+ Sbjct: 754 DRNHPKIRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQ 813 Query: 794 AI 799 + Sbjct: 814 VL 815
>Q2JP68:RUVB_SYNJB Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime) Length = 378 Score = 51.2 bits (121), Expect = 1e-05 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Frame = +2 Query: 161 MAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGK 325 + P P + E RPR + + Q E+ VL+ + A L H+LFYGPPG GK Sbjct: 47 LQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGPPGLGK 106 Query: 326 TTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKD 448 TT A +A ++ G + Y L + + +VR K D Sbjct: 107 TTVAAVLAAEM-GSQFYMTTAPALESPRDIAGYLVRLKRGD 146
>Q2JTM7:RUVB1_SYNJA Holliday junction ATP-dependent DNA helicase ruvB 1 - Synechococcus| sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) Length = 378 Score = 51.2 bits (121), Expect = 1e-05 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Frame = +2 Query: 161 MAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGK 325 + P P + E RPR + + Q E+ VL+ + A L H+LFYGPPG GK Sbjct: 47 LQPQAHPGEAQEESLRPRTLAEYIGQTELKEVLSIAIAAARARQEPLDHLLFYGPPGLGK 106 Query: 326 TTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKD 448 TT A +A ++ G + Y L + + +VR K D Sbjct: 107 TTVAAVLAAEM-GSQFYMTTAPALESPRDIAGYLVRLKRGD 146
>P0C1D3:CTF18_EMENI Chromosome transmission fidelity protein 18 - Emericella nidulans| (Aspergillus nidulans) Length = 993 Score = 50.4 bits (119), Expect = 2e-05 Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 66/267 (24%) Frame = +2 Query: 191 WVEKYRPRQVKDVAHQEEVVRVLTNTL----------------------ETADLPH---M 295 W EKYR R+ ++ E R + L + + PH + Sbjct: 258 WTEKYRARKYTELIGDERTNRSILRWLRGWDPIVYPSLARAKQNKKYNNDEEERPHRKVL 317 Query: 296 LFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAV----- 460 L GPPG GKTT A A Q G E VLE+NASDER +VV+ +I+D Sbjct: 318 LLCGPPGLGKTTLAHVCARQA-GYE-----VLEINASDERSRDVVKGRIRDALGTENVKG 371 Query: 461 -----------------------------AVGSARKGGYPCPPYKIIILDEADS--MTED 547 G + +GG+ +++LD+ +S +E Sbjct: 372 MNVELGEQKVRKVGRPVCVVVDEVDGVVSGSGGSGEGGFMKALTDLVLLDQRNSARTSER 431 Query: 548 AQNALRRTMETYSKVTRFFFICNYISRI-IEPL----ASRCAKFRFKPLSEDVMSNRILH 712 A + +R + + + +CN + + PL + R PL E+V+S R+ Sbjct: 432 ASDGRKRKGDNFRFLRPLILVCNDVYHASLRPLRQSSVAEIIHVRQAPL-ENVVS-RMKS 489 Query: 713 ICSEEGLTLDAHALSTLSTISQGDLRR 793 I + EG+ D+ + L S G +R Sbjct: 490 IFTLEGIPSDSDGVRRLCEASWGLAKR 516
>Q8CG07:WRIP1_RAT ATPase WRNIP1 - Rattus norvegicus (Rat)| Length = 660 Score = 50.1 bits (118), Expect = 3e-05 Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 27/238 (11%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 +P +K RP ++D Q V +L + LET ++P ++ +GPPG GKTT A IA Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA-- 277 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + + R + L+A++ + N VR IK RK I+ +DE Sbjct: 278 -NNSKKHSIRFVTLSATNAK-TNDVRDVIKQAQNEKSFFKRK--------TILFIDEIHR 327 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL-- 709 + Q+ +E + N ++ L SRC + L + M ++ Sbjct: 328 FNKSQQDTFLPHVECGTITLIGATTENPSFQVNTALLSRCRVIVLEKLPVEAMVTILMRA 387 Query: 710 ----------------------HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSA 817 + SE + ++ A+ TL+ +S GD R + LQ A Sbjct: 388 INSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLA 445
>Q7V910:RUVB_PROMM Holliday junction ATP-dependent DNA helicase ruvB - Prochlorococcus| marinus (strain MIT 9313) Length = 352 Score = 49.3 bits (116), Expect = 4e-05 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Frame = +2 Query: 158 EMAPLVPPSQPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGT 319 + +PL + P E RPR+++D Q E+ +VL ++ A L H+L YGPPG Sbjct: 24 DASPLPEEASPAREDGLRPRRLEDYIGQRELKQVLAIAVKAAMGRGDALDHVLLYGPPGL 83 Query: 320 GKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCP 499 GKTT A+ +A +L K RV A + + +D + V Sbjct: 84 GKTTMAMVLAEELG----VKCRVTSAPALE---------RPRDIVGLLVN--------LQ 122 Query: 500 PYKIIILDEADSMTEDAQNALRRTME 577 P +++ +DE +T A+ L ME Sbjct: 123 PREVLFIDEIHRLTRVAEELLYPAME 148
>Q91XU0:WRIP1_MOUSE ATPase WRNIP1 - Mus musculus (Mouse)| Length = 660 Score = 48.1 bits (113), Expect = 1e-04 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 27/238 (11%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 +P +K RP ++D Q V +L + LE ++P ++ +GPPG GKTT A IA Sbjct: 220 KPLADKMRPDTLQDYIGQSRAVGQETLLRSLLEANEIPSLILWGPPGCGKTTLAHIIA-- 277 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + + R + L+A++ + N VR IK RK I+ +DE Sbjct: 278 -NNSKKHSIRFVTLSATNAK-TNDVRDVIKQAQNEKSFFKRK--------TILFIDEIHR 327 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRIL-- 709 + Q+ +E + N ++ L SRC + L + M ++ Sbjct: 328 FNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRA 387 Query: 710 ----------------------HICSEEGLTLDAHALSTLSTISQGDLRRAITYLQSA 817 + SE + ++ A+ TL+ +S GD R + LQ A Sbjct: 388 INSLGIHVLDSSRPTDPLSHSSNCSSEPSVFIEDKAVDTLAYLSDGDARTGLNGLQLA 445
>Q96S55:WRIP1_HUMAN ATPase WRNIP1 - Homo sapiens (Human)| Length = 665 Score = 48.1 bits (113), Expect = 1e-04 Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 27/238 (11%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 +P + RP ++D Q + V +L + LET ++P ++ +GPPG GKTT A IA Sbjct: 225 KPLADTMRPDTLQDYFGQSKAVGQDTLLRSLLETNEIPSLILWGPPGCGKTTLAHIIA-- 282 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 + + R + L+A++ + N VR IK RK I+ +DE Sbjct: 283 -SNSKKHSIRFVTLSATNAK-TNDVRDVIKQAQNEKSFFKRK--------TILFIDEIHR 332 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRI--- 706 + Q+ +E + N ++ L SRC + L + M + Sbjct: 333 FNKSQQDTFLPHVECGTITLIGATTENPSFQVNAALLSRCRVIVLEKLPVEAMVTILMRA 392 Query: 707 -----LHI----------------CSEEGLTLDAHALSTLSTISQGDLRRAITYLQSA 817 +H+ SE + ++ A+ TL+ +S GD R + LQ A Sbjct: 393 INSLGIHVLDSSRPTDPLSHSSNSSSEPAMFIEDKAVDTLAYLSDGDARAGLNGLQLA 450
>Q56214:RUVB_THETH Holliday junction ATP-dependent DNA helicase ruvB - Thermus| thermophilus Length = 324 Score = 47.0 bits (110), Expect = 2e-04 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + + QE + + L LE A L H+L +GPPG GKTT A IA++L G Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-GVN 65 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 L RV A ++ G D AA+ S +G I+ +DE ++ A Sbjct: 66 L---RVTSGPAIEKPG---------DLAAILANSLEEG-------DILFIDEIHRLSRQA 106 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 107 EEHLYPAMEDF 117
>Q5SL87:RUVB_THET8 Holliday junction ATP-dependent DNA helicase ruvB - Thermus| thermophilus (strain HB8 / ATCC 27634 / DSM 579) Length = 324 Score = 47.0 bits (110), Expect = 2e-04 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + + QE + + L LE A L H+L +GPPG GKTT A IA++L G Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-GVN 65 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 L RV A ++ G D AA+ S +G I+ +DE ++ A Sbjct: 66 L---RVTSGPAIEKPG---------DLAAILANSLEEG-------DILFIDEIHRLSRQA 106 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 107 EEHLYPAMEDF 117
>P61537:RUVB_THET2 Holliday junction ATP-dependent DNA helicase ruvB - Thermus| thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) Length = 336 Score = 47.0 bits (110), Expect = 2e-04 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + + QE + + L LE A L H+L +GPPG GKTT A IA++L G Sbjct: 19 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL-GVN 77 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 L RV A ++ G D AA+ S +G I+ +DE ++ A Sbjct: 78 L---RVTSGPAIEKPG---------DLAAILANSLEEG-------DILFIDEIHRLSRQA 118 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 119 EEHLYPAMEDF 129
>Q2LRA8:RUVB_SYNAS Holliday junction ATP-dependent DNA helicase ruvB - Syntrophus| aciditrophicus (strain SB) Length = 340 Score = 47.0 bits (110), Expect = 2e-04 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL-YGP 367 RP +K+ Q+++ + L +E A L H+L YGPPG GKTT AL IA ++ + Sbjct: 23 RPHSIKEYVGQKKIKKTLPIFVEAAQKRKEALDHVLLYGPPGLGKTTLALIIAREMGFNI 82 Query: 368 ELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 547 ++ V+E + + T +KD Y I+ +DE + Sbjct: 83 KVTSGPVIERPGD----LAAILTNLKD------------------YDILFIDEIHRLPHS 120 Query: 548 AQNALRRTMETY 583 + L ME + Sbjct: 121 VEEILYPAMEDF 132
>P61529:RUVB_BDEBA Holliday junction ATP-dependent DNA helicase ruvB - Bdellovibrio| bacteriovorus Length = 329 Score = 47.0 bits (110), Expect = 2e-04 Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 6/176 (3%) Frame = +2 Query: 173 VPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTA 337 V + W + RP++ +D Q++V L + A L H+L GPPG GKTT + Sbjct: 10 VEGEKSWENELRPQKFEDFPGQDDVKEKLKVFVAAAKHRGESLDHVLLCGPPGLGKTTLS 69 Query: 338 LAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIII 517 IA + G E+ ++ A D++G D AA+ P+ ++ Sbjct: 70 KIIANDM-GAEI---KMTSAPAIDKKG---------DLAAILTS--------LKPHSVLF 108 Query: 518 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII-EPLASRCAKFRFKPLS 682 +DE ++ + L ME Y YI + E L +R KF P + Sbjct: 109 IDEIHRLSRHVEEYLYTAMEDY-----------YIDIVTGEGLGARSMKFTLAPFT 153
>Q3AND8:RUVB_SYNSC Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| sp. (strain CC9605) Length = 348 Score = 46.2 bits (108), Expect = 4e-04 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Frame = +2 Query: 158 EMAPLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTG 322 + AP S+P +K RP+++ D Q E+ +VL ++ A L H+L YGPPG G Sbjct: 23 QQAPEEVVSRP-EDKLRPQRLDDYIGQSELKQVLGIAVQAALGRGDALDHVLLYGPPGLG 81 Query: 323 KTTTALAIAYQL 358 KTT A+ +A ++ Sbjct: 82 KTTMAMVLAEEM 93
>P45262:Y1590_HAEIN Uncharacterized protein HI1590 - Haemophilus influenzae| Length = 446 Score = 45.8 bits (107), Expect = 5e-04 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 10/218 (4%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 358 P K RP ++ Q ++ + L ++ + M+F+GPPGTGKTT A IA + Sbjct: 15 PLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIYSMIFWGPPGTGKTTLAEIIAQR- 73 Query: 359 YGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSM 538 +NA ER I+ V + IK+ A+ A++ I+ +DE Sbjct: 74 ------------INAEVER-ISAVTSGIKEIRE-AIDRAKQNRL-ADRKTILFVDEVHRF 118 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS----EDVMSNRI 706 + Q+A +E + + N + L SR + K L+ E V+ + Sbjct: 119 NKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAV 178 Query: 707 ---LHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQ 811 +E L L+ + L L+ GD R A+ L+ Sbjct: 179 EDPKRGLGKERLILEENLLQVLAEYVNGDARLALNCLE 216
>Q7U9W7:RUVB_SYNPX Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| sp. (strain WH8102) Length = 348 Score = 45.8 bits (107), Expect = 5e-04 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 RP+++ D Q+E+ +VL ++ A L H+L YGPPG GKTT AL +A +L Sbjct: 37 RPKRLDDYIGQDELKQVLGIAVQAALGRGDALDHVLLYGPPGLGKTTMALVLAEEL 92
>Q46IJ6:RUVB_PROMT Holliday junction ATP-dependent DNA helicase ruvB - Prochlorococcus| marinus (strain NATL2A) Length = 356 Score = 45.8 bits (107), Expect = 5e-04 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 5/132 (3%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQLY 361 + RP+ D Q E+ +VL +++ + L H++ YGPPG GKTT AL IA +L Sbjct: 38 DSLRPKSFDDFVGQSELKKVLEISVKASLKRGEALDHLMLYGPPGLGKTTMALVIAEELG 97 Query: 362 GPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMT 541 KARV A ER ++V I P ++I +DE + Sbjct: 98 ----VKARVTSAPAL-ERPRDIVGLLIN----------------IQPRELIFVDEIHRLN 136 Query: 542 EDAQNALRRTME 577 +Q L ME Sbjct: 137 RISQELLYPAME 148
>Q3B0J1:RUVB_SYNS9 Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| sp. (strain CC9902) Length = 347 Score = 45.4 bits (106), Expect = 6e-04 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 + RP+++ + Q E+ +VL +E A L H+L YGPPG GKTT AL +A +L Sbjct: 35 DSLRPKRLSEYIGQSELKQVLGIAVEAALGRGEALDHVLLYGPPGLGKTTMALVLAEEL 93
>Q8DGR1:RUVB_SYNEL Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| elongatus (Thermosynechococcus elongatus) Length = 363 Score = 45.4 bits (106), Expect = 6e-04 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 + RP ++D Q+E+ VL ++ A L H+L YGPPG GKTT AL +A ++ Sbjct: 36 DSLRPHSLQDYIGQQELKEVLHIAIQAAKARQEPLDHLLLYGPPGLGKTTIALILAAEM 94
>Q97GT1:RUVB_CLOAB Holliday junction ATP-dependent DNA helicase ruvB - Clostridium| acetobutylicum Length = 349 Score = 45.4 bits (106), Expect = 6e-04 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+++ + Q +V + + A L H+LFYGPPG GKTT A IA ++ G Sbjct: 21 RPQKLNEYIGQSKVKEKMDIFIRAAKKRGEALDHVLFYGPPGLGKTTLANIIAKEMGG-- 78 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 +V A + G D AA+ G + Y ++ +DE + Sbjct: 79 --NLKVTSGPAIERAG---------DLAAILTGLSE--------YDVLFIDEIHRLNRSV 119 Query: 551 QNALRRTMETYS 586 + L ME Y+ Sbjct: 120 EEILYPAMEDYA 131
>Q7NGP9:RUVB_GLOVI Holliday junction ATP-dependent DNA helicase ruvB - Gloeobacter| violaceus Length = 376 Score = 44.7 bits (104), Expect = 0.001 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 E RP+ + D A Q+++ VL + A L H+LFYGPPG GKT+ +L +A ++ Sbjct: 45 ESLRPKNLVDYAGQKDLKAVLGIAVAAAKSRGESLDHLLFYGPPGLGKTSISLILAREM 103
>P61539:RUVB_WOLPM Holliday junction ATP-dependent DNA helicase ruvB - Wolbachia| pipientis wMel Length = 326 Score = 44.3 bits (103), Expect = 0.001 Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 32/135 (23%) Frame = +2 Query: 206 RPRQVKDVAHQEEVV---RVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQL---- 358 RP Q+ D Q++++ +V N +T L H+L YGPPG GKTT A ++ +L Sbjct: 20 RPEQLDDFVGQKDLIQNLKVFINAAQTRTEALDHVLLYGPPGLGKTTLAQIVSKELRVSF 79 Query: 359 ---YGPELYKARVL-----ELNASD----------ERGI-NVVRTKIKDFAA-VAVG--- 469 GP L KA L LNA D R I V+ T ++DF + VG Sbjct: 80 RATSGPLLSKAGDLAAVLTTLNAKDVLFIDEIHRLNRSIEEVLYTAMEDFCLDILVGEGP 139 Query: 470 SARKGGYPCPPYKII 514 S R PP+ +I Sbjct: 140 STRTLRIDLPPFTLI 154
>Q5PBM1:RUVB_ANAMM Holliday junction ATP-dependent DNA helicase ruvB - Anaplasma| marginale (strain St. Maries) Length = 331 Score = 44.3 bits (103), Expect = 0.001 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP +++ Q EV++ L +++A + H+L YGPPG GKTT A I Sbjct: 22 RPCLIEEFVGQTEVIKNLKVFIQSAYERREPMDHVLLYGPPGLGKTTLAHII-------- 73 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 A+ L++N G + +K D AA+ P ++ +DE + + Sbjct: 74 ---AKELKVNFRSTAG--PLLSKAGDLAAILTN--------LQPMDVLFIDEIHRLNRNI 120 Query: 551 QNALRRTMETY 583 + L ME Y Sbjct: 121 EEVLYSAMEDY 131
>P96115:RUVB_TREPA Holliday junction ATP-dependent DNA helicase ruvB - Treponema| pallidum Length = 350 Score = 43.9 bits (102), Expect = 0.002 Identities = 67/247 (27%), Positives = 96/247 (38%), Gaps = 35/247 (14%) Frame = +2 Query: 161 MAPLVPPSQPWVEK---YRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPG 316 ++P+ P +QP ++ RPR +KD QE+ R L ++ A L H+ GPPG Sbjct: 7 LSPVRPEAQPTDDRERALRPRLLKDFLGQEKTKRNLRLFIQAARDRNESLDHLFLIGPPG 66 Query: 317 TGKTTTALAIAYQL-------YGPELYKARVLE--LNASDERG------INVVRTKIKDF 451 GKTT A A +L P L K + L L A ER I+ ++ I++ Sbjct: 67 LGKTTLAHITACELGVECKVTGAPALDKPKDLAGILTALSERSVFFVDEIHRLKPAIEEM 126 Query: 452 AAVAV------------GSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 595 +A+ SAR P PP+ +I T A + + V Sbjct: 127 LYIAMEDYELDWVIGQGPSARTVRIPLPPFTLI------GATTRAGMVSSPLISRFGIVE 180 Query: 596 RFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTIS 775 RF F Y + + R A R+L I TLDA A L+ S Sbjct: 181 RFEF---YTPEELAAIVQRSA--------------RLLDI------TLDARAALALARCS 217 Query: 776 QGDLRRA 796 +G R A Sbjct: 218 RGTPRVA 224
>Q31Q03:RUVB_SYNP7 Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| sp. (strain PCC 7942) (Anacystis nidulans R2) Length = 375 Score = 43.9 bits (102), Expect = 0.002 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAI 346 SQ ++ RP+++ D Q E+ VL + A L H+L YGPPG GKTT AL + Sbjct: 41 SQRPEDQIRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVL 100 Query: 347 AYQL 358 A ++ Sbjct: 101 ATEM 104
>Q5N474:RUVB_SYNP6 Holliday junction ATP-dependent DNA helicase ruvB - Synechococcus| sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans) Length = 375 Score = 43.9 bits (102), Expect = 0.002 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAI 346 SQ ++ RP+++ D Q E+ VL + A L H+L YGPPG GKTT AL + Sbjct: 41 SQRPEDQIRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYGPPGLGKTTMALVL 100 Query: 347 AYQL 358 A ++ Sbjct: 101 ATEM 104
>Q5WHR5:RUVB_BACSK Holliday junction ATP-dependent DNA helicase ruvB - Bacillus| clausii (strain KSM-K16) Length = 333 Score = 43.9 bits (102), Expect = 0.002 Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+++ D QE V L +E A L H+L YGPPG GKTT A IA ++ G Sbjct: 22 RPKRLADYIGQETVKHNLAVFMEAAKMREEALDHVLLYGPPGLGKTTLAAIIAAEMGG-- 79 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 EL + I + D AA+ P ++ +DE + Sbjct: 80 -------ELRTTSGPAIE----RSGDLAAILTA--------LEPGDVLFIDEIHRLNRTV 120 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 121 EEVLYPAMEDF 131
>Q6NXW6:RAD17_MOUSE Cell cycle checkpoint protein RAD17 - Mus musculus (Mouse)| Length = 688 Score = 43.9 bits (102), Expect = 0.002 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 45/255 (17%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVA-HQEEVVRVLT----NTLETADLPH---MLFYGPPGTGKTTTA 337 ++PWV+KY+P ++A H++++ V T LE +L GPPG GKTTT Sbjct: 87 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLEVKPKQGGSVLLITGPPGCGKTTTI 146 Query: 338 LAIAYQL----------YGPELYKARVLELNASDERGINVVRTK-----IKDFAAVAVGS 472 ++ +L P+ K EL S E +VV + DF A Sbjct: 147 KILSKELGIQVQEWVNPILPDFQKDDYKEL-LSLESNFSVVPYQSQIAVFNDFLLRATKY 205 Query: 473 AR---KGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR---FFFICNYIS--- 625 ++ G KII+++E + NAL + + ++ R F + + +S Sbjct: 206 SKLQMLGDDLTTDKKIILVEELPNQFYRDPNALHEILRKHVQIGRCPLVFIVSDSVSGDN 265 Query: 626 --RIIEP--LASRC--AKFRFKPLSEDVMS---NRILHI-CSEEGLTLDAHALSTLSTIS 775 R++ P + C + F P++ +M NRI+ I S+ G + ++L + Sbjct: 266 NQRLLFPRNIQEECSVSNISFNPVAPTIMMKFLNRIVTIEASKNGEKIIVPNKTSLELLC 325 Query: 776 Q---GDLRRAITYLQ 811 Q GD+R AI LQ Sbjct: 326 QGCSGDIRSAINSLQ 340
>Q57396:RUVB_SYNY3 Holliday junction ATP-dependent DNA helicase ruvB - Synechocystis| sp. (strain PCC 6803) Length = 361 Score = 43.5 bits (101), Expect = 0.002 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 9/76 (11%) Frame = +2 Query: 158 EMAPLVPPSQPWVEKY----RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGP 310 E+ P + P +E+ RP+++ D Q ++ VL ++ A + H+L YGP Sbjct: 23 EVIPQERSTSPELEQQEASLRPQRLADYIGQRDLKEVLRIAIQAAQGRQEAIDHLLLYGP 82 Query: 311 PGTGKTTTALAIAYQL 358 PG GKTT AL +A ++ Sbjct: 83 PGLGKTTLALILAEEM 98
>P0AAZ4:YCAJ_ECOLI Uncharacterized protein ycaJ - Escherichia coli| Length = 447 Score = 43.1 bits (100), Expect = 0.003 Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 10/222 (4%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 QP + RP + Q+ ++ + L +E L M+ +GPPGTGKTT A IA Sbjct: 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 NA ER I+ V + +K+ A+ AR+ I+ +DE Sbjct: 74 -------------ANADVER-ISAVTSGVKEIRE-AIERARQ-NRNAGRRTILFVDEVHR 117 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHI 715 + Q+A +E + N + L SR + K LS + + + Sbjct: 118 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 Query: 716 CSE-------EGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + + + L ++ + GD RRA+ L+ A Sbjct: 178 MEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMA 219
>P0AAZ5:YCAJ_ECOL6 Uncharacterized protein ycaJ - Escherichia coli O6| Length = 447 Score = 43.1 bits (100), Expect = 0.003 Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 10/222 (4%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 QP + RP + Q+ ++ + L +E L M+ +GPPGTGKTT A IA Sbjct: 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 NA ER I+ V + +K+ A+ AR+ I+ +DE Sbjct: 74 -------------ANADVER-ISAVTSGVKEIRE-AIERARQ-NRNAGRRTILFVDEVHR 117 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHI 715 + Q+A +E + N + L SR + K LS + + + Sbjct: 118 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 Query: 716 CSE-------EGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + + + L ++ + GD RRA+ L+ A Sbjct: 178 MEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMA 219
>P0AAZ6:YCAJ_ECO57 Uncharacterized protein ycaJ - Escherichia coli O157:H7| Length = 447 Score = 43.1 bits (100), Expect = 0.003 Identities = 52/222 (23%), Positives = 86/222 (38%), Gaps = 10/222 (4%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQ 355 QP + RP + Q+ ++ + L +E L M+ +GPPGTGKTT A IA Sbjct: 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 Query: 356 LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADS 535 NA ER I+ V + +K+ A+ AR+ I+ +DE Sbjct: 74 -------------ANADVER-ISAVTSGVKEIRE-AIERARQ-NRNAGRRTILFVDEVHR 117 Query: 536 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHI 715 + Q+A +E + N + L SR + K LS + + + Sbjct: 118 FNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 Query: 716 CSE-------EGLTLDAHALSTLSTISQGDLRRAITYLQSAA 820 + + + L ++ + GD RRA+ L+ A Sbjct: 178 MEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMA 219
>Q7UZP3:RUVB_PROMP Holliday junction ATP-dependent DNA helicase ruvB - Prochlorococcus| marinus subsp. pastoris (strain CCMP 1378 / MED4) Length = 352 Score = 43.1 bits (100), Expect = 0.003 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 26/228 (11%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP K+ QE++ L +E + L H L YG PG GKTT AL I+Y Sbjct: 41 RPNSFKEFIGQEQIKSSLKIAIEASKYRKEALEHTLLYGQPGLGKTTLALLISY------ 94 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 E+N + + +D + +G ++G +I+ +DE + + Sbjct: 95 -------EMNTKCKVASAPSLERPRDIVGLLLG-LKEG-------EILFIDEIHRLNKLT 139 Query: 551 QNALRRTMETYS----------------KVTRFFFI--CNYISRIIEPLASR---CAKFR 667 + L ME + + +F I ++ I PL R C K Sbjct: 140 EELLYSAMEDFRLDLTMGANRGTRCRTINLPKFTLIGATTKLASISAPLRDRFGLCHKIE 199 Query: 668 FKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTISQGDLRRAITYLQ 811 S D + I + + L L+ A S L+ IS+G R A+ L+ Sbjct: 200 L--YSNDELHQIIFNFATLINLQLENDACSALAKISRGTPRIALRLLK 245
>Q83BE0:RUVB_COXBU Holliday junction ATP-dependent DNA helicase ruvB - Coxiella| burnetii Length = 351 Score = 43.1 bits (100), Expect = 0.003 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 15/85 (17%) Frame = +2 Query: 173 VPPSQPWVEK-YRPRQVKDVAHQEEV-------VRVLTNTLETADLPHMLFYGPPGTGKT 328 V ++P +E+ RP+++ D Q V +R TN E D H+L +GPPG GKT Sbjct: 14 VQSNEPDLERSIRPKRLSDYIGQAAVREQMDIFIRAATNRREALD--HVLIFGPPGLGKT 71 Query: 329 TTALAIAYQLY-------GPELYKA 382 T A IA+++ GP L KA Sbjct: 72 TLAHIIAHEMQAGLKQTSGPVLEKA 96
>P40151:MGS1_YEAST DNA-dependent ATPase MGS1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 587 Score = 43.1 bits (100), Expect = 0.003 Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 21/229 (9%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVVRVLTNTL----ETADLPHMLFYGPPGTGKTTTALAIAYQ 355 P EK RP++++D Q+ ++ TL + +P M+ +GPPG GKT+ A Sbjct: 134 PLSEKLRPKELRDYVGQQHILSQDNGTLFKYIKQGTIPSMILWGPPGVGKTSLARL---- 189 Query: 356 LYGPELYKARVLELNASDERG----INVVRTKIKDFAAVAVGSARKGGYPCPPYK-IIIL 520 L K N S+ I TK + K Y + ++ + Sbjct: 190 -----LTKTATTSSNESNVGSRYFMIETSATKANTQELRGIFEKSKKEYQLTKRRTVLFI 244 Query: 521 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSED---- 688 DE + Q+ L +E + N ++ L SRC F + L+ + Sbjct: 245 DEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALISRCLIFVLEKLNVNELCI 304 Query: 689 VMSNRI--LHICS------EEGLTLDAHALSTLSTISQGDLRRAITYLQ 811 V+S I L+ C E L L L + +S GD RRA+ L+ Sbjct: 305 VLSRGIALLNKCRKQVWNIENPLKLSRSILEYVVDLSVGDTRRALNMLE 353
>Q67Q97:RUVB_SYMTH Holliday junction ATP-dependent DNA helicase ruvB - Symbiobacterium| thermophilum Length = 347 Score = 42.7 bits (99), Expect = 0.004 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 E RP+++ D QE V L+ + A L H+L YGPPG GKTT A IA+++ Sbjct: 20 ETLRPQRLADYPGQERVKEQLSIYIAAAKKRGEPLDHVLLYGPPGLGKTTLAHIIAHEM 78
>Q4A9R6:RUVB_MYCHJ Holliday junction ATP-dependent DNA helicase ruvB - Mycoplasma| hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) Length = 318 Score = 42.7 bits (99), Expect = 0.004 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP ++ Q+++V L + ++ L H+LFYGPPGTGKTT A + Sbjct: 8 RPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIV-------- 59 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 A VLE +G + K D AV + P II +DE + ++ Sbjct: 60 ---ANVLEAKIKYVQG--PLLEKKSDVLAVLANIS--------PDTIIFIDEIHGINKNI 106 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 107 EELLYSAMEEF 117
>Q4A7W4:RUVB_MYCH7 Holliday junction ATP-dependent DNA helicase ruvB - Mycoplasma| hyopneumoniae (strain 7448) Length = 318 Score = 42.7 bits (99), Expect = 0.004 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP ++ Q+++V L + ++ L H+LFYGPPGTGKTT A + Sbjct: 8 RPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIV-------- 59 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 A VLE +G + K D AV + P II +DE + ++ Sbjct: 60 ---ANVLEAKIKYVQG--PLLEKKSDVLAVLANIS--------PDTIIFIDEIHGINKNI 106 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 107 EELLYSAMEEF 117
>Q600N3:RUVB_MYCH2 Holliday junction ATP-dependent DNA helicase ruvB - Mycoplasma| hyopneumoniae (strain 232) Length = 318 Score = 42.7 bits (99), Expect = 0.004 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP ++ Q+++V L + ++ L H+LFYGPPGTGKTT A + Sbjct: 8 RPSSFENFIGQKKLVETLQILISSSQKRKQSLDHILFYGPPGTGKTTLANIV-------- 59 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 A VLE +G + K D AV + P II +DE + ++ Sbjct: 60 ---ANVLEAKIKYVQG--PLLEKKSDVLAVLANIS--------PDTIIFIDEIHGINKNI 106 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 107 EELLYSAMEEF 117
>Q8Y6Z8:RUVB_LISMO Holliday junction ATP-dependent DNA helicase ruvB - Listeria| monocytogenes Length = 335 Score = 42.7 bits (99), Expect = 0.004 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + Q++V LT +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 23 RPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIASEM 78
>Q71ZD8:RUVB_LISMF Holliday junction ATP-dependent DNA helicase ruvB - Listeria| monocytogenes serotype 4b (strain F2365) Length = 335 Score = 42.7 bits (99), Expect = 0.004 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + Q++V LT +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 23 RPQNLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIAAEM 78
>Q39JJ1:RUVB_BURS3 Holliday junction ATP-dependent DNA helicase ruvB - Burkholderia| sp. (strain 383) (Burkholderia cepacia (strain ATCC 17760 / NCIB 9086 / R18194)) Length = 356 Score = 42.7 bits (99), Expect = 0.004 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPRQ+ D QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 31 RPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAHIIAREM 86
>Q93LP2:RUVB_BURCE Holliday junction ATP-dependent DNA helicase ruvB - Burkholderia| cepacia (Pseudomonas cepacia) Length = 355 Score = 42.7 bits (99), Expect = 0.004 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPRQ+ D QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDDYVGQEKVRGQLEIFIEAAKRRSEPLDHVLLFGPPGLGKTTLAHIIAREM 85
>Q3MEF4:RUVB_ANAVT Holliday junction ATP-dependent DNA helicase ruvB - Anabaena| variabilis (strain ATCC 29413 / PCC 7937) Length = 366 Score = 42.7 bits (99), Expect = 0.004 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 E RP++ D Q+++ VL ++ A L H+L YGPPG GKTT A+ +A ++ Sbjct: 47 ESIRPQKFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEM 105
>Q8YT32:RUVB_ANASP Holliday junction ATP-dependent DNA helicase ruvB - Anabaena sp.| (strain PCC 7120) Length = 366 Score = 42.7 bits (99), Expect = 0.004 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 E RP++ D Q+++ VL ++ A L H+L YGPPG GKTT A+ +A ++ Sbjct: 47 ESIRPQRFADYIGQKDLKDVLDIAIKAAKSRGEVLDHLLLYGPPGLGKTTMAMILASEM 105
>P36966:PEX6_YARLI Peroxisomal biogenesis factor 6 - Yarrowia lipolytica (Candida| lipolytica) Length = 1024 Score = 42.7 bits (99), Expect = 0.004 Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 19/130 (14%) Frame = +2 Query: 224 DVAHQEEVVRVLTNTLETA-DLPH-----------MLFYGPPGTGKTTTALAIA------ 349 DV E V + + +T+ET PH +LFYGPPGTGKT A AIA Sbjct: 720 DVGGMEGVKKDILDTIETPLKYPHWFSDGVKKRSGILFYGPPGTGKTLLAKAIATTFSLN 779 Query: 350 -YQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDE 526 + + GPEL + E A+ R V K +D PC ++ DE Sbjct: 780 FFSVKGPELLNMYIGESEANVRR----VFQKARD------------AKPC----VVFFDE 819 Query: 527 ADSMTEDAQN 556 DS+ N Sbjct: 820 LDSVAPQRGN 829
>Q87D00:RUVB_XYLFT Holliday junction ATP-dependent DNA helicase ruvB - Xylella| fastidiosa (strain Temecula1 / ATCC 700964) Length = 343 Score = 42.4 bits (98), Expect = 0.005 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+++ D Q+ V + + L H+L +GPPG GKTT + IAY+L Sbjct: 21 RPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPPGLGKTTLSHVIAYELG--- 77 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 K RV V K D AA+ PY ++ +DE ++ Sbjct: 78 -VKLRVTS---------GPVIEKAGDLAALLTN--------LQPYDVLFIDEIHRLSPVV 119 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 120 EEVLYPAMEDF 130
>Q9PC79:RUVB_XYLFA Holliday junction ATP-dependent DNA helicase ruvB - Xylella| fastidiosa Length = 343 Score = 42.4 bits (98), Expect = 0.005 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+++ D Q+ V + + L H+L +GPPG GKTT + IAY+L Sbjct: 21 RPKRLADYLGQQPVREQMDIYIQATKARAEALDHVLIFGPPGLGKTTLSHVIAYELG--- 77 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 K RV V K D AA+ PY ++ +DE ++ Sbjct: 78 -VKLRVTS---------GPVIEKAGDLAALLTN--------LQPYDVLFIDEIHRLSPVV 119 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 120 EEVLYPAMEDF 130
>Q92BI2:RUVB_LISIN Holliday junction ATP-dependent DNA helicase ruvB - Listeria| innocua Length = 335 Score = 42.4 bits (98), Expect = 0.005 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + Q++V LT +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 23 RPQTLSQYIGQDKVKNNLTVFIEAATLRNEALDHVLLYGPPGLGKTTLAMVIASEM 78
>Q3Z8V1:RUVB_DEHE1 Holliday junction ATP-dependent DNA helicase ruvB - Dehalococcoides| ethenogenes (strain 195) Length = 349 Score = 42.4 bits (98), Expect = 0.005 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RPR + D Q+ + L ++ A L H+L YGPPG GKTT + IA ++ Sbjct: 25 RPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYGPPGLGKTTLSHIIALEMG--- 81 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 R+ A + +G D AA+ P+ I+ +DE ++ + Sbjct: 82 -VNIRITSGPAIERQG---------DLAAILTN--------LKPFDILFIDEIHRLSRNV 123 Query: 551 QNALRRTMETYS 586 + L ME Y+ Sbjct: 124 EEVLYPAMEDYA 135
>Q3ZWZ9:RUVB_DEHSC Holliday junction ATP-dependent DNA helicase ruvB - Dehalococcoides| sp. (strain CBDB1) Length = 349 Score = 42.0 bits (97), Expect = 0.007 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RPR + D Q+ + L ++ A L H+L YGPPG GKTT + IA ++ Sbjct: 25 RPRCLPDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLYGPPGLGKTTLSHIIALEMG--- 81 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 R+ A + +G D AA+ P+ I+ +DE ++ + Sbjct: 82 -VNIRITSGPAIERQG---------DLAAILTN--------LKPFDILFIDEIHRLSRNV 123 Query: 551 QNALRRTMETYS 586 + L ME Y+ Sbjct: 124 EEVLYPAMEDYA 135
>Q3ABY0:RUVB_CARHZ Holliday junction ATP-dependent DNA helicase ruvB -| Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) Length = 339 Score = 42.0 bits (97), Expect = 0.007 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPR++ + Q++V ++ +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPRRLSEYIGQQKVKETISIFIEAAKKRNEALDHVLLFGPPGLGKTTLATIIANEL 76
>Q30PX6:RUVB_THIDN Holliday junction ATP-dependent DNA helicase ruvB - Thiomicrospira| denitrificans (strain ATCC 33889 / DSM 1351) Length = 337 Score = 41.6 bits (96), Expect = 0.009 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP + QE++ + L +E + L H+LFYGPPG GKTT AL IA ++ Sbjct: 21 RPSAWNEYIGQEQIKKNLGVFIEASKKRAEALDHVLFYGPPGLGKTTLALIIANEM 76
>Q9X719:RUVB_DEIRA Holliday junction ATP-dependent DNA helicase ruvB - Deinococcus| radiodurans Length = 333 Score = 41.6 bits (96), Expect = 0.009 Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + + QE++ L L+ A L H L +GPPG GKTT A IAY+L Sbjct: 12 RPKTLTEYVGQEKLKDKLGVYLQAARGRREALDHTLLFGPPGLGKTTLAHIIAYELG--- 68 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 RV A ++ G D AA+ S +G ++ +DE + A Sbjct: 69 -VNIRVTSGPAIEKPG---------DLAAILTNSLEEG-------DVLFIDEIHRLGRVA 111 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 112 EEHLYPAMEDF 122
>P50531:RAD17_SCHPO Checkpoint protein rad17 - Schizosaccharomyces pombe (Fission| yeast) Length = 606 Score = 41.6 bits (96), Expect = 0.009 Identities = 61/256 (23%), Positives = 101/256 (39%), Gaps = 47/256 (18%) Frame = +2 Query: 185 QPWVEKYRPRQVKDVA-HQEEVVRV----LTNTLETADLPHMLFYGPPGTGKTTTALAIA 349 Q W EKY P++ D+A H+ ++ + LT++LE+ L L GP G GK+T +A Sbjct: 70 QLWFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLL---LICGPSGCGKSTAVQVLA 126 Query: 350 YQ-------------LYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGY 490 + L P ++ L L R +++ T + + ++G Sbjct: 127 KELGYSLIEWLNPMNLKEPSNQESDTLSLTEKFSRFMSLCETYPELELMDSNNIQKRGKN 186 Query: 491 PCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICNYISRI----IEPLAS- 649 K I LDE +++ + +A R + T F I ++ I +E + S Sbjct: 187 AQGKKKFIFLDEIPHLSKFNGSLDAFRNVIRTALTSRGAFSIIMVLTEIQLNNLEGINSQ 246 Query: 650 -------------------RCAKFRFKPLSEDVMSNRILHICSEEGLTLDAHALSTLSTI 772 R +F P++ M + I +EG+ LS + I Sbjct: 247 DRNSFNSVQIMGNDLLQDPRVTVLQFNPIAPTYMKKCLGSILRKEGVPKSPKLLSLVENI 306 Query: 773 ---SQGDLRRAITYLQ 811 S+GDLR AI LQ Sbjct: 307 CSASEGDLRSAINSLQ 322
>P52024:HOLB_PSEAE DNA polymerase III subunit delta' - Pseudomonas aeruginosa| Length = 328 Score = 41.6 bits (96), Expect = 0.009 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 19/141 (13%) Frame = +2 Query: 296 LFYGPPGTGKTTTALAIAYQLYGPELYKA------RVLELNASD-------------ERG 418 L YGP G GK A A QL A + +L A+ E+ Sbjct: 26 LLYGPAGIGKRALAEHWAAQLLCQRPAAAGACGECKACQLLAAGTHPDYFVLEPEEAEKP 85 Query: 419 INVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 598 I V +++D V +A+ GG K+++L+ A++M +A NAL +++E S T Sbjct: 86 IRV--DQVRDLVGFVVQTAQLGGR-----KVVLLEPAEAMNVNAANALLKSLEEPSGDTV 138 Query: 599 FFFICNYISRIIEPLASRCAK 661 I + SR++ + SRC + Sbjct: 139 LLLISHQPSRLLPTIKSRCVQ 159
>Q8RAN2:RUVB_THETN Holliday junction ATP-dependent DNA helicase ruvB -| Thermoanaerobacter tengcongensis Length = 338 Score = 41.2 bits (95), Expect = 0.012 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPR + + QE++ + L +E A L H+L YGPPG GKTT A I+ ++ Sbjct: 21 RPRWLSEYIGQEKIKQELKIYIEAAKKRGEPLDHVLLYGPPGLGKTTLATVISNEM 76
>Q56313:RUVB_THEMA Holliday junction ATP-dependent DNA helicase ruvB - Thermotoga| maritima Length = 334 Score = 41.2 bits (95), Expect = 0.012 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Frame = +2 Query: 194 VEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 V+ RP+ + + QE V + L+ LE A L H+L GPPG GKTT A IA +L Sbjct: 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>Q839T5:RUVB_ENTFA Holliday junction ATP-dependent DNA helicase ruvB - Enterococcus| faecalis (Streptococcus faecalis) Length = 338 Score = 41.2 bits (95), Expect = 0.012 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + Q++V + LT +E A L H L YGPPG GKTT A+ IA ++ Sbjct: 24 RPQFLAQYIGQDKVKQELTIYIEAAKNRNEALDHTLLYGPPGLGKTTMAMVIANEM 79
>Q2SZ55:RUVB_BURTA Holliday junction ATP-dependent DNA helicase ruvB - Burkholderia| thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) Length = 356 Score = 41.2 bits (95), Expect = 0.012 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRAEALDHVLLFGPPGLGKTTLAHIIAREM 85
>Q63QX5:RUVB_BURPS Holliday junction ATP-dependent DNA helicase ruvB - Burkholderia| pseudomallei (Pseudomonas pseudomallei) Length = 356 Score = 41.2 bits (95), Expect = 0.012 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIIAREM 85
>Q3JNS5:RUVB_BURP1 Holliday junction ATP-dependent DNA helicase ruvB - Burkholderia| pseudomallei (strain 1710b) Length = 356 Score = 41.2 bits (95), Expect = 0.012 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIIAREM 85
>Q62HA9:RUVB_BURMA Holliday junction ATP-dependent DNA helicase ruvB - Burkholderia| mallei (Pseudomonas mallei) Length = 356 Score = 41.2 bits (95), Expect = 0.012 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RPRQ+ + QE+V L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 30 RPRQLDEYVGQEKVRDQLEIFIEAAKRRSEALDHVLLFGPPGLGKTTLAHIIAREM 85
>Q929G7:CLPB_LISIN Chaperone clpB - Listeria innocua| Length = 866 Score = 41.2 bits (95), Expect = 0.012 Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 14/141 (9%) Frame = +2 Query: 197 EKYRPRQVKDVAHQ-----EEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTT 334 E+ + ++ DV HQ ++ V+++++ + A + +F GP G GKT Sbjct: 561 EREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTEL 620 Query: 335 ALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKII 514 A A+AY ++ E + R+ ++ ++ + + G PY I+ Sbjct: 621 AKALAYNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSIV 680 Query: 515 ILDEADSMTEDAQNALRRTME 577 +LDE + D N L + ++ Sbjct: 681 LLDEIEKAHPDVFNILLQVLD 701
>Q9CD28:Y2537_MYCLE Uncharacterized protein ML2537 - Mycobacterium leprae| Length = 640 Score = 40.8 bits (94), Expect = 0.015 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = +2 Query: 242 EVVRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPELY-KARVLELNASDERG 418 E+VR + H++F GPPGTGKTT A +A G L K + E++ +D G Sbjct: 372 ELVRKQRGLMVAQRAHHLVFAGPPGTGKTTIARVVAKVYCGLGLLKKENIREVHRADLIG 431 Query: 419 INVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEA 529 ++ T+ K A + SA G ++ LDEA Sbjct: 432 QHIGETEAKTNA--VIDSALDG--------VLFLDEA 458
>Q47N43:RUVB_THEFY Holliday junction ATP-dependent DNA helicase ruvB - Thermobifida| fusca (strain YX) Length = 351 Score = 40.8 bits (94), Expect = 0.015 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RPR + + Q+ V L+ L +A H+L G PG GKTT A+ IA +L P Sbjct: 25 RPRTLDEFVGQDRVREQLSLVLRSAQQRGTAPDHILMSGGPGLGKTTLAMIIAAELGAP- 83 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 R+ A + G D AAV + + R+G +++ LDE M A Sbjct: 84 ---LRITSGPAIERSG---------DLAAV-LSTLREG-------EVLFLDEIHRMARPA 123 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 124 EEMLYVAMEDF 134
>P57892:RUVB_PASMU Holliday junction ATP-dependent DNA helicase ruvB - Pasteurella| multocida Length = 335 Score = 40.8 bits (94), Expect = 0.015 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + D Q V + ++ A L H+L +GPPG GKTT A +A+ Sbjct: 24 RPKLLNDYVGQPHVCEQMAIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVAH------ 77 Query: 371 LYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 E G+N+ V K D AA+ P+ ++ +DE Sbjct: 78 -------------EMGVNIRTTSGPVLEKAGDLAAMLTN--------LEPHDVLFIDEIH 116 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 117 RLSPAIEEVLYPAMEDY 133
>Q8EPQ6:RUVB_OCEIH Holliday junction ATP-dependent DNA helicase ruvB - Oceanobacillus| iheyensis Length = 334 Score = 40.8 bits (94), Expect = 0.015 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP + Q++V LT ++ A L H+L YGPPG GKTT A I+Y++ Sbjct: 22 RPSTLSQYIGQDKVKENLTIFIQAAKMREEPLDHVLLYGPPGLGKTTLASIISYEM 77
>Q38YQ9:RUVB_LACSS Holliday junction ATP-dependent DNA helicase ruvB - Lactobacillus| sakei subsp. sakei (strain 23K) Length = 335 Score = 40.8 bits (94), Expect = 0.015 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + Q+ V L +E A L H+L YGPPG GKTT A+ IA +L Sbjct: 24 RPQVLAQYIGQDRVKNELAVYIEAAKKREESLDHVLLYGPPGLGKTTLAMVIANEL 79
>Q5QYU5:RUVB_IDILO Holliday junction ATP-dependent DNA helicase ruvB - Idiomarina| loihiensis Length = 339 Score = 40.8 bits (94), Expect = 0.015 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 358 RP+ + D Q+ VV + +E A L H+L +GPPG GKTT A +A +L Sbjct: 29 RPKTLADYTGQKHVVEQMGIFIEAARKRQEALDHLLIFGPPGLGKTTLANIVANELDVSI 88 Query: 359 ---YGPELYKA 382 GP L KA Sbjct: 89 KTTSGPVLEKA 99
>Q7VKV5:RUVB_HAEDU Holliday junction ATP-dependent DNA helicase ruvB - Haemophilus| ducreyi Length = 334 Score = 40.8 bits (94), Expect = 0.015 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + D Q V + ++ A L H+L +GPPG GKTT A +A Sbjct: 24 RPKLLTDYVGQPSVREQMEIFIKAAKLRHEALDHLLIFGPPGLGKTTLANIVA------- 76 Query: 371 LYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 +E G+N+ V K D AA+ PY I+ +DE Sbjct: 77 ------------NEMGVNIRTTSGPVLEKAGDLAAMLTN--------LEPYDILFIDEIH 116 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 117 RLSPAIEEVLYPAMEDY 133
>Q9F746:CLPB_YEREN Chaperone clpB - Yersinia enterocolitica| Length = 890 Score = 40.8 bits (94), Expect = 0.015 Identities = 22/84 (26%), Positives = 35/84 (41%) Frame = +2 Query: 296 LFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSA 475 + GP G GKT TALAIA +YG E + + ++ ++ + G Sbjct: 623 MLVGPSGVGKTETALAIAESMYGGEQNLITINMSEYQESHTVSSLKGSPPGYVGYGEGGV 682 Query: 476 RKGGYPCPPYKIIILDEADSMTED 547 PY +++LDE + D Sbjct: 683 LTEAVRRKPYSVVLLDEIEKAHSD 706
>Q7NFE9:CLPB_GLOVI Chaperone clpB - Gloeobacter violaceus| Length = 872 Score = 40.8 bits (94), Expect = 0.015 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%) Frame = +2 Query: 221 KDVAHQEEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 373 K V QEE VR+++ ++ + + +F GP G GKT A A+A L+ E Sbjct: 575 KRVVGQEEAVRIVSEAIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALASFLFDDEN 634 Query: 374 YKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQ 553 R+ ++ ++ + + G PY +++ DE + D Sbjct: 635 AMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPYAVVLFDEIEKAHNDVF 694 Query: 554 NALRRTME 577 N L + ++ Sbjct: 695 NVLLQVLD 702
>Q5GT33:RUVB_WOLTR Holliday junction ATP-dependent DNA helicase ruvB - Wolbachia sp.| subsp. Brugia malayi (strain TRS) Length = 326 Score = 40.4 bits (93), Expect = 0.020 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 17/85 (20%) Frame = +2 Query: 206 RPRQVKDVAHQEEVV---RVLTNTLETAD--LPHMLFYGPPGTGKTTTALAIAYQL---- 358 RP Q+ D Q++++ +V N +T L H+L +GPPG GKTT A I+ +L Sbjct: 20 RPEQLDDFFGQKDLIQNLKVFINAAKTRTEALDHVLLHGPPGLGKTTLAQIISKELRVSF 79 Query: 359 ---YGPELYKARVL-----ELNASD 409 GP L KA L LNA D Sbjct: 80 RATSGPLLNKAGDLAAVLTTLNAKD 104
>Q7M879:RUVB_WOLSU Holliday junction ATP-dependent DNA helicase ruvB - Wolinella| succinogenes Length = 335 Score = 40.4 bits (93), Expect = 0.020 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP D QE++ R L +E A L H+LF+GPPG GKTT A I++++ Sbjct: 21 RPSGWDDYIGQEKIKRNLGVFIEAAKRRGEGLDHILFFGPPGLGKTTLAHIISHEM 76
>Q5M2B1:RUVB_STRT2 Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| thermophilus (strain ATCC BAA-250 / LMG 18311) Length = 333 Score = 40.4 bits (93), Expect = 0.020 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 12/145 (8%) Frame = +2 Query: 185 QPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAI 346 + +VE+ RP+ K+ Q++V L +E A L H L +GPPG GKTT A I Sbjct: 13 EEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVI 72 Query: 347 AYQLYGPELYKARVLELNASDERGINVVRT------KIKDFAAVAVGSARKGGYPCPPYK 508 A +E G+N+ +T K D A+ P Sbjct: 73 A-------------------NEMGVNLKQTSGPAIEKAGDLVAIL--------NDLEPGD 105 Query: 509 IIILDEADSMTEDAQNALRRTMETY 583 I+ +DE M + L ME Y Sbjct: 106 ILFIDEIHRMPMAVEEVLYSAMEDY 130
>Q5LXQ9:RUVB_STRT1 Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| thermophilus (strain CNRZ 1066) Length = 333 Score = 40.4 bits (93), Expect = 0.020 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 12/145 (8%) Frame = +2 Query: 185 QPWVEK-YRPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAI 346 + +VE+ RP+ K+ Q++V L +E A L H L +GPPG GKTT A I Sbjct: 13 EEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVI 72 Query: 347 AYQLYGPELYKARVLELNASDERGINVVRT------KIKDFAAVAVGSARKGGYPCPPYK 508 A +E G+N+ +T K D A+ P Sbjct: 73 A-------------------NEMGVNLKQTSGPAIEKAGDLVAIL--------NDLEPGD 105 Query: 509 IIILDEADSMTEDAQNALRRTMETY 583 I+ +DE M + L ME Y Sbjct: 106 ILFIDEIHRMPMAVEEVLYSAMEDY 130
>Q9ZDE5:RUVB_RICPR Holliday junction ATP-dependent DNA helicase ruvB - Rickettsia| prowazekii Length = 342 Score = 40.4 bits (93), Expect = 0.020 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 364 RP +K+ Q+++ L ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLKEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>Q92I87:RUVB_RICCN Holliday junction ATP-dependent DNA helicase ruvB - Rickettsia| conorii Length = 342 Score = 40.4 bits (93), Expect = 0.020 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP +++ Q+++ L+ ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG-- 76 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 N G ++ K+ D AA+ + ++ +DE + Sbjct: 77 ---------NFKSTSGPAIL--KVADLAAILTNLEKN--------DVLFIDEIHRLNTAV 117 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 118 EEVLYPAMEDF 128
>Q2RHT7:RUVB_MOOTA Holliday junction ATP-dependent DNA helicase ruvB - Moorella| thermoacetica (strain ATCC 39073) Length = 336 Score = 40.4 bits (93), Expect = 0.020 Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RPR + + QE V L ++ A L H+L YGPPG GKTT A IA +L G + Sbjct: 23 RPRCLAEYIGQEHVKETLGIFIQAARERGEALDHVLLYGPPGLGKTTLAGIIANEL-GVQ 81 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 L RV A + G D AA+ P ++ +DE + Sbjct: 82 L---RVTSGPALERAG---------DLAAILTN--------LQPRDVLFIDEIHRLPRQV 121 Query: 551 QNALRRTMETY 583 + L ME + Sbjct: 122 EEILYPAMEDF 132
>Q39XN6:RUVB_GEOMG Holliday junction ATP-dependent DNA helicase ruvB - Geobacter| metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) Length = 338 Score = 40.4 bits (93), Expect = 0.020 Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RPR + D QE+ L ++ A L H+L YGPPG GKTT A IA Sbjct: 20 RPRALDDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLGKTTLANIIAC------ 73 Query: 371 LYKARVLELNASDERGINVVRT------KIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 E G+N+ T + D AA+ P+ ++ +DE Sbjct: 74 -------------EMGVNIKSTSGPVIERPGDLAAILTN--------LEPHDVLFIDEIH 112 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 113 RLSHVVEEILYPAMEDY 129
>Q6D4A2:RUVB_ERWCT Holliday junction ATP-dependent DNA helicase ruvB - Erwinia| carotovora subsp. atroseptica (Pectobacterium atrosepticum) Length = 334 Score = 40.4 bits (93), Expect = 0.020 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 11/151 (7%) Frame = +2 Query: 164 APLVPPSQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKT 328 A VP + RP+ +K+ Q +V + ++ A L H+L +GPPG GKT Sbjct: 10 ADAVPEEEFLDRAMRPKLLKEYVGQPQVREQMEIFIQAARKRGDALDHLLIFGPPGLGKT 69 Query: 329 TTALAIAYQLYGPELYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGY 490 T A +A +E G+N+ V K D AA+ Sbjct: 70 TLANIVA-------------------NEMGVNMRTTSGPVLEKAGDLAALLTN------- 103 Query: 491 PCPPYKIIILDEADSMTEDAQNALRRTMETY 583 P+ ++ +DE ++ + L ME Y Sbjct: 104 -LEPHDVLFIDEIHRLSPVVEEVLYPAMEDY 133
>Q89U80:RUVB_BRAJA Holliday junction ATP-dependent DNA helicase ruvB - Bradyrhizobium| japonicum Length = 351 Score = 40.4 bits (93), Expect = 0.020 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + D Q++ + L+ +E A L H+LF GPPG GKTT A +A +L Sbjct: 25 RPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKEL 80
>O68185:CLPB_LACLM Chaperone clpB - Lactococcus lactis subsp. cremoris (strain MG1363)| Length = 867 Score = 40.4 bits (93), Expect = 0.020 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Frame = +2 Query: 227 VAHQEEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYK 379 V Q+E V +++ + A L LF GP G GKT A A+A L+ E + Sbjct: 573 VVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHM 632 Query: 380 ARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNA 559 R+ ++ ++ + + G PY II+LDE + D N Sbjct: 633 VRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNI 692 Query: 560 LRRTME 577 L + ++ Sbjct: 693 LLQVLD 698
>Q9CFF3:CLPB_LACLA Chaperone clpB - Lactococcus lactis subsp. lactis (Streptococcus| lactis) Length = 867 Score = 40.4 bits (93), Expect = 0.020 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 9/126 (7%) Frame = +2 Query: 227 VAHQEEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYK 379 V Q+E V +++ + A L LF GP G GKT A A+A L+ E + Sbjct: 573 VVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHM 632 Query: 380 ARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNA 559 R+ ++ ++ + + G PY II+LDE + D N Sbjct: 633 VRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNI 692 Query: 560 LRRTME 577 L + ++ Sbjct: 693 LLQVLD 698
>Q96TA2:YMEL1_HUMAN ATP-dependent metalloprotease YME1L1 - Homo sapiens (Human)| Length = 773 Score = 40.0 bits (92), Expect = 0.026 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 5/124 (4%) Frame = +2 Query: 239 EEVVRVLTN----TLETADLPH-MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNA 403 +EVV L N T+ LP +L GPPGTGKT A A+A + P Y + + Sbjct: 352 QEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASG----SE 407 Query: 404 SDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 583 DE + V ++I++ A K PC +I +DE DS+ + M Y Sbjct: 408 FDEMFVGVGASRIRNLFREA-----KANAPC----VIFIDELDSV---GGKRIESPMHPY 455 Query: 584 SKVT 595 S+ T Sbjct: 456 SRQT 459
>Q8E2D9:RUVB_STRA5 Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| agalactiae serotype V Length = 332 Score = 40.0 bits (92), Expect = 0.026 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>Q8E7U6:RUVB_STRA3 Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| agalactiae serotype III Length = 332 Score = 40.0 bits (92), Expect = 0.026 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>Q3K3X8:RUVB_STRA1 Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| agalactiae serotype Ia Length = 332 Score = 40.0 bits (92), Expect = 0.026 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANEL 76
>Q891Z8:RUVB_CLOTE Holliday junction ATP-dependent DNA helicase ruvB - Clostridium| tetani Length = 345 Score = 40.0 bits (92), Expect = 0.026 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQLYG 364 RP Q+++ Q +V L ++ A L H+L YGPPG GKTT A IA ++ G Sbjct: 25 RPTQLEEYIGQSKVREKLRIFIKAAKNRGESLDHVLLYGPPGLGKTTLANIIAKEMKG 82
>Q7V8B1:CLPB_PROMM Chaperone clpB - Prochlorococcus marinus (strain MIT 9313)| Length = 865 Score = 40.0 bits (92), Expect = 0.026 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%) Frame = +2 Query: 227 VAHQEEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYK 379 V QE+ V+ + + ++ + + LF GP G GKT + A+A QL+ E Sbjct: 576 VIGQEQAVQAVADAIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALASQLFDSEAAL 635 Query: 380 ARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNA 559 R+ ++ ++ + + G PY +I+ DE + +D N Sbjct: 636 VRIDMSEYMEKHSVSRLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHQDVFNV 695 Query: 560 LRRTME 577 + + ++ Sbjct: 696 MLQILD 701
>Q7N788:CLPB_PHOLL Chaperone clpB - Photorhabdus luminescens subsp. laumondii| Length = 857 Score = 40.0 bits (92), Expect = 0.026 Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 13/180 (7%) Frame = +2 Query: 221 KDVAHQEEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTTALAIAYQLYGPEL 373 K V Q+E V ++N + + + LF GP G GKT A+A L+ + Sbjct: 568 KRVIGQDEAVNAISNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDD 627 Query: 374 YKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQ 553 R+ ++ ++ + + G PY +I+LDE + D Sbjct: 628 AMVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHSDVF 687 Query: 554 NALRRTMETYSKVT----RFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICS 721 N L + ++ ++T R N + + L S + RF L+ D M + ++ I S Sbjct: 688 NILLQVLDD-GRLTDGQGRTVDFRNTVVIMTSNLGSDMIQERFGSLNYDEMKDIVMGIVS 746
>O88967:YMEL1_MOUSE ATP-dependent metalloprotease YME1L1 - Mus musculus (Mouse)| Length = 715 Score = 39.7 bits (91), Expect = 0.034 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 5/124 (4%) Frame = +2 Query: 239 EEVVRVLTN----TLETADLPH-MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNA 403 +EVV L N T+ LP +L GPPGTGKT A A+A + P Y + + Sbjct: 294 QEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASG----SE 349 Query: 404 SDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 583 DE + V ++I++ A K PC +I +DE DS+ + M Y Sbjct: 350 FDEMFVGVGASRIRNLFREA-----KANAPC----VIFIDELDSV---GGKRIESPMHPY 397 Query: 584 SKVT 595 S+ T Sbjct: 398 SRQT 401
>Q8CWU7:RUVB_STRR6 Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| pneumoniae (strain ATCC BAA-255 / R6) Length = 332 Score = 39.7 bits (91), Expect = 0.034 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANEL 76
>Q97SR6:RUVB_STRPN Holliday junction ATP-dependent DNA helicase ruvB - Streptococcus| pneumoniae Length = 332 Score = 39.7 bits (91), Expect = 0.034 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP+ +++ Q++V L +E A L H+L +GPPG GKTT A IA +L Sbjct: 21 RPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANEL 76
>Q8EEF3:RUVB_SHEON Holliday junction ATP-dependent DNA helicase ruvB - Shewanella| oneidensis Length = 334 Score = 39.7 bits (91), Expect = 0.034 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 12/71 (16%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 358 RP+ + + Q++ L ++ A L HML YGPPG GKTT A+ +A ++ Sbjct: 24 RPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHMLIYGPPGLGKTTLAMIVANEMGVNI 83 Query: 359 ---YGPELYKA 382 GP L KA Sbjct: 84 KSTSGPVLEKA 94
>Q4ULW6:RUVB_RICFE Holliday junction ATP-dependent DNA helicase ruvB - Rickettsia| felis (Rickettsia azadi) Length = 342 Score = 39.7 bits (91), Expect = 0.034 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 364 RP +++ Q+++ L+ ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLSVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>Q82XP4:RUVB_NITEU Holliday junction ATP-dependent DNA helicase ruvB - Nitrosomonas| europaea Length = 346 Score = 39.7 bits (91), Expect = 0.034 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 358 RP Q+ D QE++ L +E A L H+L +GPPG GKTT A IA ++ Sbjct: 25 RPVQLDDYVGQEKIREQLKIFIEAARLRQEALDHVLLFGPPGLGKTTLAHIIAREM 80
>Q98PR1:RUVB_MYCPU Holliday junction ATP-dependent DNA helicase ruvB - Mycoplasma| pulmonis Length = 315 Score = 39.7 bits (91), Expect = 0.034 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 ++ RP+ D Q ++ ++L + +A L H+LFYG PGTGKT+ A I+ L Sbjct: 5 QEIRPKNFSDFVGQNKLKKLLKVMISSAQVQNRPLDHILFYGNPGTGKTSLASIISNSL 63
>P61532:RUVB_GEOSL Holliday junction ATP-dependent DNA helicase ruvB - Geobacter| sulfurreducens Length = 338 Score = 39.7 bits (91), Expect = 0.034 Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RPR ++D QE+ L ++ A L H+L YGPPG GKTT A IA Sbjct: 21 RPRALEDYIGQEKAKGNLRVFIDAARKRGEALDHVLLYGPPGLGKTTLANIIAC------ 74 Query: 371 LYKARVLELNASDERGINVVRT------KIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 E G+N+ T + D AA+ P+ ++ +DE Sbjct: 75 -------------EMGVNIKSTSGPVIERPGDLAAILTN--------LEPHDVLFIDEIH 113 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME + Sbjct: 114 RLSHVVEEILYPAMEDF 130
>Q65GP6:RUVB_BACLD Holliday junction DNA helicase ruvB - Bacillus licheniformis| (strain DSM 13 / ATCC 14580) Length = 334 Score = 39.7 bits (91), Expect = 0.034 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 + RP+++ QE+V L +E A L H+L YGPPG GKTT A IA ++ Sbjct: 19 QSLRPQRLAQYIGQEKVKDNLKVFIEAAKMREETLDHVLLYGPPGLGKTTLAAIIANEM 77
>Q6FW67:PEX6_CANGA Peroxisomal biogenesis factor 6 - Candida glabrata (Yeast)| (Torulopsis glabrata) Length = 1017 Score = 39.7 bits (91), Expect = 0.034 Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Frame = +2 Query: 293 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERGINVVRTKIKDF 451 +LFYGPPGTGKT A AIA + + GPEL + E A+ R V K +D Sbjct: 754 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRR----VFQKARD- 808 Query: 452 AAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQN 556 PC +I DE DS+ N Sbjct: 809 -----------AKPC----VIFFDEVDSVAPKRGN 828
>Q2NTI8:RUVB_SODGM Holliday junction ATP-dependent DNA helicase ruvB - Sodalis| glossinidius (strain morsitans) Length = 338 Score = 39.3 bits (90), Expect = 0.044 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP++++D Q V+ + ++ A L H+L GPPG GKTT A +A Sbjct: 24 RPKKLEDYIGQPHVLEQMEIFIQAAKMRGDALDHLLISGPPGLGKTTLANIVA------- 76 Query: 371 LYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 +E G+N+ V K D AA+ P+ ++ +DE Sbjct: 77 ------------NEMGVNLRTTSGPVLEKAGDLAAMLTS--------LEPHDVLFIDEIH 116 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 117 RLSPVVEEVLYPAMEDY 133
>Q1RHZ9:RUVB_RICBR Holliday junction ATP-dependent DNA helicase ruvB - Rickettsia| bellii (strain RML369-C) Length = 342 Score = 39.3 bits (90), Expect = 0.044 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 364 RP +++ Q+++ L+ + A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLSVFIRAAKSRGEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>Q7UPG4:RUVB_RHOBA Holliday junction ATP-dependent DNA helicase ruvB - Rhodopirellula| baltica Length = 366 Score = 39.3 bits (90), Expect = 0.044 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP+++ ++ Q++V+ L ++ A L H+LF GPPG GKTT A I ++ Sbjct: 52 RPQRMAEMVGQQDVIERLRIAIDAAQVRGEPLGHILFDGPPGLGKTTFATVIPSEM 107
>Q65UP0:RUVB_MANSM Holliday junction ATP-dependent DNA helicase ruvB - Mannheimia| succiniciproducens (strain MBEL55E) Length = 335 Score = 39.3 bits (90), Expect = 0.044 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + D Q +V + ++ A L H+L +GPPG GKTT A +A Sbjct: 24 RPKLLTDYVGQPQVREQMGIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVA------- 76 Query: 371 LYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 +E G+N+ V K D AA+ P+ ++ +DE Sbjct: 77 ------------NEMGVNIRTTSGPVLEKAGDLAAMLTN--------LEPHDVLFIDEIH 116 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 117 RLSPAIEEVLYPAMEDY 133
>Q5FLX2:RUVB_LACAC Holliday junction ATP-dependent DNA helicase ruvB - Lactobacillus| acidophilus Length = 349 Score = 39.3 bits (90), Expect = 0.044 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 12/80 (15%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL---- 358 RP+ + Q+ V + ++ ++ A L H+L YGPPG GKTT A IA +L Sbjct: 37 RPQTLDQYLGQKRVKKEMSIYIKAARQRDEALDHVLLYGPPGLGKTTLAFVIANELGVHL 96 Query: 359 ---YGPELYKARVLELNASD 409 GP + KA L SD Sbjct: 97 KSTSGPAIEKAGDLVALLSD 116
>P44631:RUVB_HAEIN Holliday junction ATP-dependent DNA helicase ruvB - Haemophilus| influenzae Length = 335 Score = 39.3 bits (90), Expect = 0.044 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + D Q +V + ++ A L H+L +GPPG GKTT A +A Sbjct: 24 RPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVA------- 76 Query: 371 LYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 +E G+N+ V K D AA+ P+ ++ +DE Sbjct: 77 ------------NEMGVNIRTTSGPVLEKAGDLAAMLTN--------LEPHDVLFIDEIH 116 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 117 RLSPAIEEVLYPAMEDY 133
>Q4QNM6:RUVB_HAEI8 Holliday junction ATP-dependent DNA helicase ruvB - Haemophilus| influenzae (strain 86-028NP) Length = 335 Score = 39.3 bits (90), Expect = 0.044 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 11/137 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + D Q +V + ++ A L H+L +GPPG GKTT A +A Sbjct: 24 RPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVA------- 76 Query: 371 LYKARVLELNASDERGINV------VRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEAD 532 +E G+N+ V K D AA+ P+ ++ +DE Sbjct: 77 ------------NEMGVNIRTTSGPVLEKAGDLAAMLTN--------LEPHDVLFIDEIH 116 Query: 533 SMTEDAQNALRRTMETY 583 ++ + L ME Y Sbjct: 117 RLSPAIEEVLYPAMEDY 133
>Q5KWR0:RUVB_GEOKA Holliday junction ATP-dependent DNA helicase ruvB - Geobacillus| kaustophilus Length = 333 Score = 39.3 bits (90), Expect = 0.044 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETADL-----PHMLFYGPPGTGKTTTALAIAYQL 358 RP+ + + Q+++ L +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 22 RPQYLHEYIGQDKIKENLKVFIEAAKLREETLDHVLLYGPPGLGKTTLAVIIANEM 77
>Q8XJ14:RUVB_CLOPE Holliday junction ATP-dependent DNA helicase ruvB - Clostridium| perfringens Length = 346 Score = 39.3 bits (90), Expect = 0.044 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 364 RP ++ + Q++V L ++ A L H++ YGPPG GKTT A IA ++ G Sbjct: 22 RPEKINEYIGQDKVKERLNIFIKAAQRREEALDHVILYGPPGLGKTTLANIIANEMGG 79
>Q9KDI8:RUVB_BACHD Holliday junction ATP-dependent DNA helicase ruvB - Bacillus| halodurans Length = 333 Score = 39.3 bits (90), Expect = 0.044 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 5/56 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQL 358 RP + QE+V + L +E A L H+L YGPPG GKTT + IA +L Sbjct: 22 RPHSFEQYIGQEKVKQNLKVFIEAAKMREEALDHVLLYGPPGLGKTTLSTIIANEL 77
>Q9UVU5:PEX6_PICAN Peroxisomal biogenesis factor 6 - Pichia angusta (Yeast) (Hansenula| polymorpha) Length = 1135 Score = 39.3 bits (90), Expect = 0.044 Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Frame = +2 Query: 293 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERGINVVRTKIKDF 451 +LFYGPPGTGKT A AIA + + GPEL + E A+ R V K +D Sbjct: 849 ILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRR----VFQKARD- 903 Query: 452 AAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQN 556 PC +I DE DS+ N Sbjct: 904 -----------AKPC----VIFFDELDSVAPKRGN 923
>Q6CPV1:PEX6_KLULA Peroxisomal biogenesis factor 6 - Kluyveromyces lactis (Yeast)| (Candida sphaerica) Length = 1000 Score = 39.3 bits (90), Expect = 0.044 Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Frame = +2 Query: 293 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERGINVVRTKIKDF 451 +LFYGPPGTGKT A AIA + + GPEL + E A+ R V K +D Sbjct: 738 ILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELLNMYIGESEANVRR----VFQKARD- 792 Query: 452 AAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQN 556 PC +I DE DS+ N Sbjct: 793 -----------AKPC----VIFFDELDSVAPKRGN 812
>Q6BS73:PEX6_DEBHA Peroxisomal biogenesis factor 6 - Debaryomyces hansenii (Yeast)| (Torulaspora hansenii) Length = 1198 Score = 39.3 bits (90), Expect = 0.044 Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Frame = +2 Query: 293 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERGINVVRTKIKDF 451 +LFYGPPGTGKT A AIA + + GPEL + E A+ R V K +D Sbjct: 875 ILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRR----VFQKARD- 929 Query: 452 AAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQN 556 PC +I DE DS+ N Sbjct: 930 -----------AKPC----VIFFDELDSVAPKRGN 949
>Q8Y570:CLPB_LISMO Chaperone clpB - Listeria monocytogenes| Length = 866 Score = 39.3 bits (90), Expect = 0.044 Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 14/141 (9%) Frame = +2 Query: 197 EKYRPRQVKDVAHQ-----EEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTT 334 E+ + ++ DV HQ ++ V+++++ + A + +F GP G GKT Sbjct: 561 EREKLLKLADVLHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTEL 620 Query: 335 ALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKII 514 A A+A+ ++ E + R+ ++ ++ + + G PY I+ Sbjct: 621 AKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYIGYEEGGQLTEAVRRNPYSIV 680 Query: 515 ILDEADSMTEDAQNALRRTME 577 +LDE + D N L + ++ Sbjct: 681 LLDEIEKAHPDVFNILLQVLD 701
>Q71XF9:CLPB_LISMF Chaperone clpB - Listeria monocytogenes serotype 4b (strain F2365)| Length = 866 Score = 39.3 bits (90), Expect = 0.044 Identities = 22/94 (23%), Positives = 41/94 (43%) Frame = +2 Query: 296 LFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSA 475 +F GP G GKT A A+A+ ++ E + R+ ++ ++ + + G Sbjct: 608 IFLGPTGVGKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQ 667 Query: 476 RKGGYPCPPYKIIILDEADSMTEDAQNALRRTME 577 PY I++LDE + D N L + ++ Sbjct: 668 LTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLD 701
>Q831Y7:CLPB_ENTFA Chaperone clpB - Enterococcus faecalis (Streptococcus faecalis)| Length = 868 Score = 39.3 bits (90), Expect = 0.044 Identities = 25/98 (25%), Positives = 41/98 (41%) Frame = +2 Query: 284 LPHMLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDFAAVA 463 L LF GP G GKT A A+A L+ E + R+ ++ ++ + + Sbjct: 601 LGSFLFLGPTGVGKTELAKALAEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYVGYE 660 Query: 464 VGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTME 577 G PY I++LDE + D N L + ++ Sbjct: 661 EGGQLTEAVRRNPYTIVLLDEIEKAHPDVFNILLQVLD 698
>Q7VQF3:CLPB_BLOFL Chaperone clpB - Blochmannia floridanus| Length = 872 Score = 39.3 bits (90), Expect = 0.044 Identities = 36/179 (20%), Positives = 72/179 (40%), Gaps = 13/179 (7%) Frame = +2 Query: 227 VAHQEEVVRVLTNTLETA---------DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYK 379 V Q+E VRV++N + + + +F GP G GKT A++ L+ + Sbjct: 572 VIGQDEAVRVISNAIRRSRSGLSDPKRPIGSFMFLGPTGVGKTELCKALSQFLFDTDNAM 631 Query: 380 ARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNA 559 R+ ++ ++ + + G+ PY I++LDE + D N Sbjct: 632 VRIDMSEFMEKHSVSKLLGAPPGYIGYESGAYLTESIRRRPYSIVLLDEIEKAHLDVFNI 691 Query: 560 LRRTMETYSKVT----RFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHICSE 724 L + ++ ++T R N + + L S + +F D M +L++ ++ Sbjct: 692 LLQVLDD-GRLTDNQGRMVDFNNTVIIMTSNLGSDLIQKKFDISDYDTMKKTVLNVVNQ 749
>Q925S8:YMEL1_RAT ATP-dependent metalloprotease YME1L1 - Rattus norvegicus (Rat)| Length = 715 Score = 38.9 bits (89), Expect = 0.058 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 5/124 (4%) Frame = +2 Query: 239 EEVVRVLTN----TLETADLPH-MLFYGPPGTGKTTTALAIAYQLYGPELYKARVLELNA 403 +EVV L N T+ LP +L GPPGTGKT A A+A + P Y + + Sbjct: 294 QEVVEFLKNPQKFTVLGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASG----SE 349 Query: 404 SDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 583 DE + V ++I++ A K PC +I +DE DS+ + M Y Sbjct: 350 FDEMFVGVGASRIRNLFREA-----KANAPC----VIFIDELDSV---GGKRIEFPMHPY 397 Query: 584 SKVT 595 S+ T Sbjct: 398 SRQT 401
>O53687:Y282_MYCTU Uncharacterized protein Rv0282/MT0295 - Mycobacterium tuberculosis| Length = 631 Score = 38.9 bits (89), Expect = 0.058 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = +2 Query: 290 HMLFYGPPGTGKTTTALAIAYQLYGPELYK-ARVLELNASDERGINVVRTKIKDFAAVAV 466 H++F GPPGTGKTT A +A G L K + E++ +D G ++ T+ K A + Sbjct: 380 HLVFAGPPGTGKTTIARVVAKIYCGLGLLKRENIREVHRADLIGQHIGETEAKTNA--II 437 Query: 467 GSARKGGYPCPPYKIIILDEA 529 SA G ++ LDEA Sbjct: 438 DSALDG--------VLFLDEA 450
>P39918:Y1189_COXBU Uncharacterized protein CBU_1189 - Coxiella burnetii| Length = 440 Score = 38.9 bits (89), Expect = 0.058 Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 10/221 (4%) Frame = +2 Query: 188 PWVEKYRPRQVKDVAHQEEVV---RVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQL 358 P + RP +++ Q ++ + L +E L M+ +GPPG+GKTT A IA + Sbjct: 9 PLATRMRPGCLEEFVGQSHLLGKDKPLFRAIEKGKLHSMILWGPPGSGKTTLAEIIAQKA 68 Query: 359 YGPELYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSM 538 ARV I+ V +KD V + R G I+ +DE Sbjct: 69 ------GARV--------ESISAVLAGVKDIRDVVERAERHKGQA----TILFVDEVHGF 110 Query: 539 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMSNRILHIC 718 + Q+A +E + N ++ L SR + K L+E + + + + Sbjct: 111 NKSQQDAFLPHVEKGTITLIGATTENPSFQLNNALLSRTRVYVLKQLTEADLLSILENAL 170 Query: 719 SEEGLTLDAHALS-------TLSTISQGDLRRAITYLQSAA 820 + E L AL + + GD R+ + L+ A Sbjct: 171 ANEERGLGKKALEIPEPLRRRIVQFADGDARQCLNLLEIIA 211
>Q68WZ0:RUVB_RICTY Holliday junction ATP-dependent DNA helicase ruvB - Rickettsia| typhi Length = 342 Score = 38.9 bits (89), Expect = 0.058 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYG 364 RP +++ Q+++ L ++ A L H LFYGPPG GKTT A I+ ++ G Sbjct: 19 RPSYLQEFVGQQQIKENLLVFIKAAKSRNEHLDHTLFYGPPGLGKTTLAKIISNEIGG 76
>Q6LT48:RUVB_PHOPR Holliday junction ATP-dependent DNA helicase ruvB - Photobacterium| profundum (Photobacterium sp. (strain SS9)) Length = 337 Score = 38.9 bits (89), Expect = 0.058 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEV-----VRVLTNTLETADLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP+ + D Q+ V + + L L H+L +GPPG GKTT A +A Sbjct: 25 RPKLLNDYQGQDHVRGQMEIFIKAAQLREEALDHLLIFGPPGLGKTTLANIVAN------ 78 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 E+ S V K D AA+ P ++ +DE ++ Sbjct: 79 -------EMGVSIRTTSGPVLEKAGDLAALLTN--------LEPNDVLFIDEIHRLSPHV 123 Query: 551 QNALRRTMETY 583 + L ME Y Sbjct: 124 EEVLYPAMEDY 134
>Q2FPZ8:RUVB_METHJ Holliday junction ATP-dependent DNA helicase ruvB -| Methanospirillum hungatei (strain JF-1 / DSM 864) Length = 337 Score = 38.9 bits (89), Expect = 0.058 Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP + D Q+ + LT + +A L H+LF GPPG GKTT A IA Sbjct: 21 RPGLLADFIGQDSIKDALTVAITSARKRNKPLDHILFSGPPGLGKTTLAHIIAQ------ 74 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 E+N+ E V + D AA+ P + +DE ++ Sbjct: 75 -------EMNSHIETTSGPVLDRPGDLAALLT--------PLKDRDFLFIDEIHRLSPVI 119 Query: 551 QNALRRTMETYS 586 + L ME Y+ Sbjct: 120 EEILYPAMEDYT 131
>Q88V03:RUVB_LACPL Holliday junction ATP-dependent DNA helicase ruvB - Lactobacillus| plantarum Length = 336 Score = 38.9 bits (89), Expect = 0.058 Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 32/135 (23%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETA-----DLPHMLFYGPPGTGKTTTALAIAYQLY--- 361 RP+ + Q V L +E A L H+L YGPPG GKTT A+ IA ++ Sbjct: 24 RPQTLAQYIGQARVKHELGVYIEAARKREESLDHVLLYGPPGLGKTTLAMVIANEMQVNI 83 Query: 362 ----GPELYK-----ARVLELNASDERGINVVR--TKIKD----------FAAVAVG--- 469 GP + K A + EL D I+ + KI + F + VG Sbjct: 84 RTTSGPAIEKPGDLVALLNELEPGDILFIDEIHRLPKIVEEMLYSAMEDFFVDIVVGQGP 143 Query: 470 SARKGGYPCPPYKII 514 +A +P PP+ +I Sbjct: 144 TAHPVHFPLPPFTLI 158
>Q2SCL3:RUVB_HAHCH Holliday junction ATP-dependent DNA helicase ruvB - Hahella| chejuensis (strain KCTC 2396) Length = 334 Score = 38.9 bits (89), Expect = 0.058 Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Frame = +2 Query: 206 RPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLYGPE 370 RP++++D Q +V + + A L H L +GPPG GKTT A IA Sbjct: 24 RPKRLEDYVGQPQVREQMEIFINAARGRQEALDHTLIFGPPGLGKTTLANIIAN------ 77 Query: 371 LYKARVLELNASDERGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDA 550 E++ S + V K D AA+ P ++ +DE ++ Sbjct: 78 -------EMDVSIKTTSGPVLEKAGDLAALLTN--------LEPKDVLFIDEIHRLSAAV 122 Query: 551 QNALRRTMETY 583 + L ME Y Sbjct: 123 EEVLYPAMEDY 133
>P61531:RUVB_DESVH Holliday junction ATP-dependent DNA helicase ruvB - Desulfovibrio| vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) Length = 320 Score = 38.9 bits (89), Expect = 0.058 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 11/140 (7%) Frame = +2 Query: 197 EKYRPRQVKDVAHQEEVVRVLTNTLETAD-----LPHMLFYGPPGTGKTTTALAIAYQLY 361 E RPR + D Q+E+ + L+ A + H+LFYG PG GKTT A +A +L Sbjct: 9 ESVRPRLLDDFIGQDELRANMRVYLDAARERGQAMDHVLFYGNPGLGKTTLAQIMAGEL- 67 Query: 362 GPELYKARVLELNASDERGINVVRT------KIKDFAAVAVGSARKGGYPCPPYKIIILD 523 G+N+V T + D AA+ R + ++ +D Sbjct: 68 ------------------GVNLVSTSGPVLERSGDLAAILTNLGR--------HDLLFVD 101 Query: 524 EADSMTEDAQNALRRTMETY 583 E M + L ME + Sbjct: 102 EIHRMPIAVEEVLYPAMEDF 121
>Q5R652:RAD17_PONPY Cell cycle checkpoint protein RAD17 - Pongo pygmaeus (Orangutan)| Length = 681 Score = 38.9 bits (89), Expect = 0.058 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 44/254 (17%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--------MLFYGPPGTGKTTT- 334 ++PWV+KY+P ++A ++ + + L+ L +L GPPG GKTTT Sbjct: 88 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTI 147 Query: 335 -ALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDF---AAVAVGS-----ARK-- 481 L+ + + E + + D +G+ + F + +AV A K Sbjct: 148 KILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYN 207 Query: 482 -----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR---FFFICNYIS---- 625 G KII++++ + + L + Y ++ R F I + +S Sbjct: 208 KLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNN 267 Query: 626 -RIIEP--LASRC--AKFRFKPLSEDVMS---NRILHICSEEG---LTL-DAHALSTLST 769 R++ P + C + F P++ +M NRI+ I + + +T+ D +L L Sbjct: 268 QRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQ 327 Query: 770 ISQGDLRRAITYLQ 811 GD+R AI LQ Sbjct: 328 GCSGDIRSAINSLQ 341
>O75943:RAD17_HUMAN Cell cycle checkpoint protein RAD17 - Homo sapiens (Human)| Length = 681 Score = 38.9 bits (89), Expect = 0.058 Identities = 59/254 (23%), Positives = 106/254 (41%), Gaps = 44/254 (17%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--------MLFYGPPGTGKTTT- 334 ++PWV+KY+P ++A ++ + + L+ L +L GPPG GKTTT Sbjct: 88 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTL 147 Query: 335 -ALAIAYQLYGPELYKARVLELNASDERGINVVRTKIKDF---AAVAVGS-----ARK-- 481 L+ + + E + + D +G+ + F + +AV A K Sbjct: 148 KILSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYN 207 Query: 482 -----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR---FFFICNYIS---- 625 G KII++++ + + L + Y ++ R F I + +S Sbjct: 208 KLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNN 267 Query: 626 -RIIEP--LASRC--AKFRFKPLSEDVMS---NRILHICSEEG---LTL-DAHALSTLST 769 R++ P + C + F P++ +M NRI+ I + + +T+ D +L L Sbjct: 268 QRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQ 327 Query: 770 ISQGDLRRAITYLQ 811 GD+R AI LQ Sbjct: 328 GCSGDIRSAINSLQ 341
>Q9XT62:RAD17_CERAE Cell cycle checkpoint protein RAD17 - Cercopithecus aethiops (Green| monkey) (Grivet) Length = 670 Score = 38.9 bits (89), Expect = 0.058 Identities = 57/255 (22%), Positives = 107/255 (41%), Gaps = 45/255 (17%) Frame = +2 Query: 182 SQPWVEKYRPRQVKDVAHQEEVVRVLTNTLETADLPH--------MLFYGPPGTGKTTTA 337 ++PWV+KY+P ++A ++ + + L+ L +L GPPG GKTTT Sbjct: 77 NEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTI 136 Query: 338 LAIAYQLYG-----------PELYKARVLEL-NASDERGINVVRTKIKDFAAVAVGSAR- 478 ++ + +G P+ K E+ N + +++I F + + + Sbjct: 137 KVLSKE-HGIQVQEWINPVLPDFQKDDFREIFNTESSFHMFPYQSQIAVFKEFLLRATKY 195 Query: 479 -----KGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR---FFFICNYIS--- 625 G KII++++ + + L + Y ++ R F I + +S Sbjct: 196 NKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFVISDSLSGDN 255 Query: 626 --RIIEP--LASRC--AKFRFKPLSEDVMS---NRILHICSEEG---LTL-DAHALSTLS 766 R++ P + C + F P++ +M NRI+ I + + +T+ D +L L Sbjct: 256 NQRLLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLC 315 Query: 767 TISQGDLRRAITYLQ 811 GD+R AI LQ Sbjct: 316 QGCSGDIRSAINSLQ 330
>P33760:PEX6_YEAST Peroxisomal biogenesis factor 6 - Saccharomyces cerevisiae (Baker's| yeast) Length = 1030 Score = 38.9 bits (89), Expect = 0.058 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Frame = +2 Query: 293 MLFYGPPGTGKTTTALAIA-------YQLYGPELYKARVLELNASDERGINVVRTK---- 439 +LFYGPPGTGKT A AIA + + GPEL + E A+ R R Sbjct: 768 ILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKAREAKPCV 827 Query: 440 --IKDFAAVAVGSARKGGYPCPPYKII--ILDEADSMTEDA 550 + +VA +G +I+ +L E D M+ DA Sbjct: 828 IFFDEIDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSTDA 868 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 218,860,790 Number of extensions: 4362430 Number of successful extensions: 15999 Number of sequences better than 10.0: 799 Number of HSP's gapped: 15670 Number of HSP's successfully gapped: 828 Length of query: 507 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 389 Effective length of database: 68,319,629 Effective search space: 26576335681 Effective search space used: 26576335681 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
