ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf102a21 |
|---|---|
| Clone Library Name | barley_pub |
>Q5ZKM1:RRMJ3_CHICK Putative rRNA methyltransferase 3 - Gallus gallus (Chicken)| Length = 832 Score = 37.4 bits (85), Expect = 0.13 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%) Frame = +2 Query: 323 LVSDLDPKPIQVRNVKFWQRRIKDARVSASVSEILEGFVERAKEDNSENTATVARLWHMD 502 L SDLDP+ ++ ++ QRR++ R V + E +E+ E + L Sbjct: 467 LASDLDPE--ELVEIEARQRRLERERREQGVKRVKPKVEEEEEEEEEEENPLLVPL---- 520 Query: 503 SPGEKFKELLKNKQ----YFEELFELLRDNHDQGYFITEIVTLVNLETSNETGRSKGAGA 670 + K +L+ +Q + ++ F + D+ D+ + + L + ++TG++K G Sbjct: 521 ----EEKSVLQERQTSLWFGKDAFAGIEDDADEDLELGQSQMLAERQRESQTGKTKKKGQ 576 Query: 671 SAKVP 685 KVP Sbjct: 577 KKKVP 581
>Q9ERA7:MSLN_RAT Mesothelin precursor - Rattus norvegicus (Rat)| Length = 625 Score = 37.0 bits (84), Expect = 0.17 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = +2 Query: 1046 CHVDGKGMSLIEDLTTNLDEIPGCPTRRIDWI--LAPEILHIFPESVLWLLGLA*IDK 1213 C++ G G L ED+ LD IP + ++ +P+ LH P SV+WL+GL +DK Sbjct: 419 CYLRGGG-KLDEDIVKALDNIP------LSYLCDFSPQDLHAIPSSVMWLVGLHDLDK 469
>P22534:GUNA_CALSA Endoglucanase A precursor - Caldocellum saccharolyticum| (Caldicellulosiruptor saccharolyticus) Length = 1742 Score = 37.0 bits (84), Expect = 0.17 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = -3 Query: 792 PRNTIVSSSYVTDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRPVSL 637 P T+ + VT P PT PTP+ +P + T T A P P P L Sbjct: 1063 PAPTVTPTPTVTPTPTPAPTPTATPTPTPTPTVTPTPTVAPTPTPSSTPSGL 1114
>P03186:TEGU_EBV Large tegument protein - Epstein-Barr virus (strain B95-8) (HHV-4)| (Human herpesvirus 4) Length = 3149 Score = 34.7 bits (78), Expect = 0.84 Identities = 37/108 (34%), Positives = 47/108 (43%) Frame = -1 Query: 800 AGIPGTQ*SPPRTSPTVRTRAPCLRVRRRPAVAPCWDPRAPLPTRRRPWTAPSRCWSPG* 621 AG PG SPP P R P +R P+ + D P R +P++ SP Sbjct: 281 AGTPGADSSPPVMLPFERRIIP-YNLRPLPSRSFTSDS---FPAARY---SPAKTNSPP- 332 Query: 620 RG*RFR**SSPGRGCPAAARIAPQSTACSSAAP*TFRPASPCATAARP 477 SSP PA+A AP S A +SAAP + PAS +A P Sbjct: 333 --------SSPASAAPASA--APASAAPASAAPASAAPASAAPASAAP 370
>Q5U405:TMPSD_MOUSE Transmembrane protease, serine 13 - Mus musculus (Mouse)| Length = 543 Score = 33.9 bits (76), Expect = 1.4 Identities = 31/95 (32%), Positives = 39/95 (41%) Frame = -1 Query: 782 Q*SPPRTSPTVRTRAPCLRVRRRPAVAPCWDPRAPLPTRRRPWTAPSRCWSPG*RG*RFR 603 Q SP RTSP RAP P +P P P R P +P+R P Sbjct: 17 QASPARTSPA---RAP-------PQASPARTPPQASPARTPPQASPARAPPPQ------- 59 Query: 602 **SSPGRGCPAAARIAPQSTACSSAAP*TFRPASP 498 +SP R PA A + S+ SS+A +SP Sbjct: 60 --ASPARASPARAPPSRSSSGRSSSARSASTTSSP 92
>Q06852:SLAP1_CLOTH Cell surface glycoprotein 1 precursor - Clostridium thermocellum| (strain ATCC 27405 / DSM 1237) Length = 2313 Score = 33.1 bits (74), Expect = 2.4 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P D P Sbjct: 1553 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1590 Score = 33.1 bits (74), Expect = 2.4 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P D P Sbjct: 1608 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1645 Score = 33.1 bits (74), Expect = 2.4 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P D P Sbjct: 1921 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1958 Score = 33.1 bits (74), Expect = 2.4 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P D P Sbjct: 1976 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 2013 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1381 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1418 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1424 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1461 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1467 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1504 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1510 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1547 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1663 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1700 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1706 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1743 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1749 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1786 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1792 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1829 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1835 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1872 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRP 646 TD P P+ PTPS P T +D P P + P Sbjct: 1878 TDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETP 1915
>P22533:MANB_CALSA Beta-mannanase/endoglucanase A precursor [Includes: Mannan| endo-1,4-beta-mannosidase A - Caldocellum saccharolyticum (Caldicellulosiruptor saccharolyticus) Length = 1331 Score = 32.7 bits (73), Expect = 3.2 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Frame = -3 Query: 795 YPRNTIVSSSYVTDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRPVS------LL 634 Y N I +SS T P S PT PTP+ +P + +T T P P+ P + L Sbjct: 316 YKTNAIGTSS--TPTPTSTVTPTPTPTPTPTPTVTATPT--PTPTPVSTPATSGQIKVLY 371 Query: 633 VSRLTRVTISVMK*PW 586 ++ T T + ++ PW Sbjct: 372 ANKETNSTTNTIR-PW 386
>Q9DBD5:PELP1_MOUSE Proline-, glutamic acid- and leucine-rich protein 1 - Mus musculus| (Mouse) Length = 1123 Score = 32.0 bits (71), Expect = 5.4 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +2 Query: 878 VMEGSDYWPAMVEKPVEGNAEPFLGDK-PEPPEISAEEMELNA 1003 ++E S PA++E+ EG GDK P PPE AEEME A Sbjct: 1048 LVEESSAPPALLEEGTEGG-----GDKVPPPPETPAEEMETEA 1085
>O88491:NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20| specific - Mus musculus (Mouse) Length = 2588 Score = 32.0 bits (71), Expect = 5.4 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = -3 Query: 783 TIVSSSYVTDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRPVSLLVSRLTR 616 ++VSS DRP ++ P P SP+ + + + + PL+RP+ + SRL + Sbjct: 2206 SLVSSQRPQDRPPAKEGPRPQPPDRASPMTRPSSSPSVSSLPLERPLRMTDSRLDK 2261
>Q61468:MSLN_MOUSE Mesothelin precursor - Mus musculus (Mouse)| Length = 625 Score = 32.0 bits (71), Expect = 5.4 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Frame = +2 Query: 1046 CHVDGKGMSLIEDLTTNLDEIPGCPTRRIDWI--LAPEILHIFPESVLWLLGLA*IDK 1213 C++ G G L ED+ L +IP + ++ +P+ LH P SV+WL+G +DK Sbjct: 419 CYLRGGGQ-LDEDMVKALGDIP------LSYLCDFSPQDLHSVPSSVMWLVGPQDLDK 469
>Q9PJF7:GP6R_CHLMU Virulence plasmid protein pGP6-D-related protein - Chlamydia| muridarum Length = 262 Score = 32.0 bits (71), Expect = 5.4 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +2 Query: 890 SDYWPAMVEKPVEGNAEPFLGDKPEPPEISAEEMELNAIIDELGFDMEV 1036 SD ++ +K +EG PFL P S EE + +++E F E+ Sbjct: 17 SDKMESLAKKRLEGELSPFLNGFTNPKLSSQEEAKFRQLLEEYSFSNEI 65
>Q62910:SYNJ1_RAT Synaptojanin-1 - Rattus norvegicus (Rat)| Length = 1574 Score = 31.6 bits (70), Expect = 7.1 Identities = 28/90 (31%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Frame = -1 Query: 713 PAVAPCWDPRAP------LPTRRRPWTAPSRCWSPG*RG*RFR**SSPGRGCPAAARIAP 552 P +PC P AP LP R P APSR P +G P + A Sbjct: 1046 PRTSPCQSPTAPEYSAPSLPIR--PSRAPSRTPGP-----------LSSQGAPVDTQPAA 1092 Query: 551 QSTACSSAAP*TFRPASPCATAARPWPCSR 462 Q + + P P P A ARP P R Sbjct: 1093 QKESSQTIEPKRPPPPRPVAPPARPAPPQR 1122
>Q5T749:KPRP_HUMAN Keratinocyte proline-rich protein - Homo sapiens (Human)| Length = 579 Score = 31.6 bits (70), Expect = 7.1 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -1 Query: 737 PCLRVRRRPAVAPCWDPRAPLPTRRRPWTAPSRCWSP 627 PC R P APC P R W +PS CW P Sbjct: 472 PCPRPEPIPLPAPCPSPEPC----RETWRSPSPCWGP 504
>P01862:IGHG2_CAVPO Ig gamma-2 chain C region - Cavia porcellus (Guinea pig)| Length = 329 Score = 31.6 bits (70), Expect = 7.1 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = -3 Query: 759 TDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRPVSLLVSRLTRVTISV 601 T P+ T P CPP + LG F P P D + L R+T V + V Sbjct: 99 TPZPBPCTCPKCPPPEN----LGGPSVFIFPPKPKDTLMISLTPRVTCVVVDV 147
>Q0UNC6:HIR1_PHANO Protein HIR1 - Phaeosphaeria nodorum (Septoria nodorum)| Length = 1044 Score = 31.2 bits (69), Expect = 9.3 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = -3 Query: 786 NTIVSSSYVTDRPDSRTVPTCPPTPSRSPVLGSTGTFADAPAPLDRPVSLLVSRL-TRVT 610 N IV S+ +T+ S T P P P+ +P A APAP + PV V +L RVT Sbjct: 433 NGIVPSTTLTNGSSS-TAPAAAPAPAPAPAPAP----APAPAPAEPPVDQRVEKLKQRVT 487 Query: 609 IS 604 ++ Sbjct: 488 VT 489
>Q2GEW1:GATB_NEOSM Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -| Neorickettsia sennetsu (strain Miyayama) Length = 488 Score = 31.2 bits (69), Expect = 9.3 Identities = 30/85 (35%), Positives = 39/85 (45%) Frame = +2 Query: 740 RESGRSVTYEEETIVFLGYRLVRLEKVDSKRAKLGRMFLGPKHGFAVMEGSDYWPAMVEK 919 RES R VT ++ V LGY E +D KLG F+G + A + G V K Sbjct: 414 RESLRQVTDDK---VILGYVK---EVLDENPTKLGEYFMGKEKMLAFLVG------QVIK 461 Query: 920 PVEGNAEPFLGDKPEPPEISAEEME 994 GNA P L +K + EE+E Sbjct: 462 KSNGNASPHLVNK-----VLLEELE 481
>Q7VRH9:DXS_BLOFL 1-deoxy-D-xylulose-5-phosphate synthase - Blochmannia floridanus| Length = 617 Score = 31.2 bits (69), Expect = 9.3 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 17 IAQLTHQTTQLRALTRNRLFSLCKAIHTFTINS 115 I +L T+LR LT N+L +LC + F +NS Sbjct: 10 ILELIDTPTELRQLTENKLQTLCSELRLFLLNS 42
>O70305:ATX2_MOUSE Ataxin-2 - Mus musculus (Mouse)| Length = 1285 Score = 31.2 bits (69), Expect = 9.3 Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 2/127 (1%) Frame = -1 Query: 857 PETFVXXXXXXXXXXXXARAGIPGTQ*SPPRT--SPTVRTRAPCLRVRRRPAVAPCWDPR 684 P FV ARA PG + SPPR+ S + R C R P P Sbjct: 94 PRPFVVVLLALAPAATPARACPPGVRASPPRSGVSSSARPAPGCPRPACEPVYGPLTMSL 153 Query: 683 APLPTRRRPWTAPSRCWSPG*RG*RFR**SSPGRGCPAAARIAPQSTACSSAAP*TFRPA 504 P P P T PG G ++ AP S A +SA+ PA Sbjct: 154 KPQPQPPAPATG-----------------RKPGGGLLSSPGAAPASAAVTSASV-VPAPA 195 Query: 503 SPCATAA 483 +P A+++ Sbjct: 196 APVASSS 202 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 194,594,035 Number of extensions: 4265972 Number of successful extensions: 15396 Number of sequences better than 10.0: 18 Number of HSP's gapped: 15206 Number of HSP's successfully gapped: 31 Length of query: 413 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 297 Effective length of database: 68,868,219 Effective search space: 20453861043 Effective search space used: 20453861043 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
