ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf104l13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q09502:YQH2_CAEEL Probable G-protein coupled receptor C43C3.2 - ... 36 0.24
2Q6L3Z4:R1B12_SOLDE Putative late blight resistance protein homol... 35 0.41
3Q6L440:R1A3_SOLDE Putative late blight resistance protein homolo... 34 0.70
4Q6L406:R1B19_SOLDE Putative late blight resistance protein homol... 32 2.7
5Q5F3A1:SEC62_CHICK Translocation protein SEC62 - Gallus gallus (... 32 4.6
6P79114:MYO10_BOVIN Myosin-X - Bos taurus (Bovine) 31 5.9

>Q09502:YQH2_CAEEL Probable G-protein coupled receptor C43C3.2 - Caenorhabditis|
           elegans
          Length = 498
 Score = 35.8 bits (81), Expect = 0.24
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -2

Query: 759 PYV*RAPSITVEGMIDRQRSTRPATKYTEEGIGGAR*F*QMTHELGSSS 613
           PY+  A +  + G+++RQ    P  KYT  G+GG     QM+H L +++
Sbjct: 375 PYINSASNFILYGLLNRQLHNAPERKYTRNGVGGR----QMSHALTTNT 419



to top

>Q6L3Z4:R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 - Solanum|
            demissum (Wild potato)
          Length = 1348

 Score = 35.0 bits (79), Expect = 0.41
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 266  QVVVKLDLHDDRHKQKAIQVVSGLHGIDDIAVDMKDQKMTVIGTVD 403
            ++V+K D  +++   KA   +  L GI  IAVD  ++K  VIG +D
Sbjct: 1286 KMVLKFDTSNEKEISKAFDRLLSLPGIQSIAVDSNEKKFIVIGDMD 1331



to top

>Q6L440:R1A3_SOLDE Putative late blight resistance protein homolog R1A-3 - Solanum|
           demissum (Wild potato)
          Length = 775

 Score = 34.3 bits (77), Expect = 0.70
 Identities = 13/46 (28%), Positives = 31/46 (67%)
 Frame = +2

Query: 266 QVVVKLDLHDDRHKQKAIQVVSGLHGIDDIAVDMKDQKMTVIGTVD 403
           +++++ D+  D+    A + ++ L G+D I++DM ++K+TV G ++
Sbjct: 713 KMILQFDISHDKEIDNAFKRLASLPGVDSISIDMIEKKLTVGGDMN 758



to top

>Q6L406:R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 - Solanum|
            demissum (Wild potato)
          Length = 1326

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 275  VKLDLHDDRHKQKAIQVVSGLHGIDDIAVDMKDQKMTVIGTVD 403
            +KL+L  D    KA + +    GI+ ++ D K++K+TV G VD
Sbjct: 1214 LKLNLSHDEDIPKAFKRLFLCPGIESVSTDRKEKKLTVTGDVD 1256



to top

>Q5F3A1:SEC62_CHICK Translocation protein SEC62 - Gallus gallus (Chicken)|
          Length = 398

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 250 KEENKMNKHEQSRN*SQKRERERERNPNSLDCKQE 146
           KEE K +K E S++   K+E+E++++    +CK++
Sbjct: 119 KEEEKKSKKESSKDEKTKKEKEKKKDGEKEECKKD 153



to top

>P79114:MYO10_BOVIN Myosin-X - Bos taurus (Bovine)|
          Length = 2052

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 259 RAIKEENKMNKHEQSRN*SQKRERERERNPNSLDCKQE 146
           RA +E+ K  + E+ +   ++RERERER    L  +QE
Sbjct: 816 RAEEEKRKREEEEKRKREEEERERERERREAELRAQQE 853


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 128,758,375
Number of extensions: 2731165
Number of successful extensions: 8693
Number of sequences better than 10.0: 6
Number of HSP's gapped: 8634
Number of HSP's successfully gapped: 6
Length of query: 299
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 187
Effective length of database: 69,965,399
Effective search space: 13083529613
Effective search space used: 13083529613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top