ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf101g05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001066253.1| Oryza sativa (japonica cultivar-group) Os07g0500300 (Os07g0500300) mRNA, complete cds Length = 952 Score = 321 bits (162), Expect = 2e-84 Identities = 401/478 (83%), Gaps = 2/478 (0%) Strand = Plus / Plus Query: 159 ggtgatcgggaagctcagcgtccgcgttgtccgaggccacaacctcatcgccgccgaccc 218 ||||||||||||||||| ||||||||| || || ||| |||||||||| ||||||||| Sbjct: 90 ggtgatcgggaagctcaacgtccgcgtggtgcggggctccaacctcatcatcgccgaccc 149 Query: 219 actcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaaggtgaagac 278 |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||| Sbjct: 150 gctcacccacaccagcgacccctacgtcgtcctctcctacggcccacagaaagtgaagac 209 Query: 279 ttgcgttcagaacaaaagtgtcaatcctgtatggaatgacgtattgcttctccctgtcac 338 | || ||||| || | | ||||||||| |||||||| ||| ||| ||| | ||||| Sbjct: 210 cagtgtccagaagaagaattccaatcctgtctggaatgaagtactgcagctcgcagtcac 269 Query: 339 aaatcttacaaagccggtcaaacttgaggtttttgatgcggacacattcacagcggatga 398 ||||| ||||||||| || |||||||| ||||| |||| ||| | ||||||||| ||||| Sbjct: 270 aaatcctacaaagccagtaaaacttgaagttttcgatgaggataaattcacagcagatga 329 Query: 399 cagcatgggagtggctgagttcagcgtaactgatatctacgacgccgcaaagctggatct 458 ||||||||| || |||||||||| ||| ||||| |||||||| || || ||||||||||| Sbjct: 330 cagcatgggcgtagctgagttcaacgtgactgacatctacgatgctgctaagctggatct 389 Query: 459 aaagcatgcctctgacggaaccaggatcaagaccatctacccggttggcacaaactacct 518 |||||||| ||||||||| ||||||||||||| |||||||| ||||| ||||| || Sbjct: 390 aaagcatgtctctgacggggccaggatcaagacgatctacccagttggtgtgaactatct 449 Query: 519 cggcggcgagagccacgtgtcgtggacgaacggcaaggtcgtccaagacttgattctgaa 578 |||| ||||||||||| || |||| || |||||||||||||||||| | | |||||| Sbjct: 450 tggcgcagagagccacgtttcatggaaaaatggcaaggtcgtccaagacatcactctgaa 509 Query: 579 gctcaaggacgtcgacagtggctctg-tcgtgctgcaactggaatgggttcacgtccc 635 ||| | | || ||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 510 gctgagcaaggttgacagtggc-ctgatcgtgctgcagctggagtgggttcacgtccc 566
>dbj|AK120268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I20, full insert sequence Length = 953 Score = 321 bits (162), Expect = 2e-84 Identities = 401/478 (83%), Gaps = 2/478 (0%) Strand = Plus / Plus Query: 159 ggtgatcgggaagctcagcgtccgcgttgtccgaggccacaacctcatcgccgccgaccc 218 ||||||||||||||||| ||||||||| || || ||| |||||||||| ||||||||| Sbjct: 91 ggtgatcgggaagctcaacgtccgcgtggtgcggggctccaacctcatcatcgccgaccc 150 Query: 219 actcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaaggtgaagac 278 |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||| Sbjct: 151 gctcacccacaccagcgacccctacgtcgtcctctcctacggcccacagaaagtgaagac 210 Query: 279 ttgcgttcagaacaaaagtgtcaatcctgtatggaatgacgtattgcttctccctgtcac 338 | || ||||| || | | ||||||||| |||||||| ||| ||| ||| | ||||| Sbjct: 211 cagtgtccagaagaagaattccaatcctgtctggaatgaagtactgcagctcgcagtcac 270 Query: 339 aaatcttacaaagccggtcaaacttgaggtttttgatgcggacacattcacagcggatga 398 ||||| ||||||||| || |||||||| ||||| |||| ||| | ||||||||| ||||| Sbjct: 271 aaatcctacaaagccagtaaaacttgaagttttcgatgaggataaattcacagcagatga 330 Query: 399 cagcatgggagtggctgagttcagcgtaactgatatctacgacgccgcaaagctggatct 458 ||||||||| || |||||||||| ||| ||||| |||||||| || || ||||||||||| Sbjct: 331 cagcatgggcgtagctgagttcaacgtgactgacatctacgatgctgctaagctggatct 390 Query: 459 aaagcatgcctctgacggaaccaggatcaagaccatctacccggttggcacaaactacct 518 |||||||| ||||||||| ||||||||||||| |||||||| ||||| ||||| || Sbjct: 391 aaagcatgtctctgacggggccaggatcaagacgatctacccagttggtgtgaactatct 450 Query: 519 cggcggcgagagccacgtgtcgtggacgaacggcaaggtcgtccaagacttgattctgaa 578 |||| ||||||||||| || |||| || |||||||||||||||||| | | |||||| Sbjct: 451 tggcgcagagagccacgtttcatggaaaaatggcaaggtcgtccaagacatcactctgaa 510 Query: 579 gctcaaggacgtcgacagtggctctg-tcgtgctgcaactggaatgggttcacgtccc 635 ||| | | || ||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 511 gctgagcaaggttgacagtggc-ctgatcgtgctgcagctggagtgggttcacgtccc 567
>dbj|AK061939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D08, full insert sequence Length = 854 Score = 321 bits (162), Expect = 2e-84 Identities = 401/478 (83%), Gaps = 2/478 (0%) Strand = Plus / Plus Query: 159 ggtgatcgggaagctcagcgtccgcgttgtccgaggccacaacctcatcgccgccgaccc 218 ||||||||||||||||| ||||||||| || || ||| |||||||||| ||||||||| Sbjct: 88 ggtgatcgggaagctcaacgtccgcgtggtgcggggctccaacctcatcatcgccgaccc 147 Query: 219 actcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaaggtgaagac 278 |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||| Sbjct: 148 gctcacccacaccagcgacccctacgtcgtcctctcctacggcccacagaaagtgaagac 207 Query: 279 ttgcgttcagaacaaaagtgtcaatcctgtatggaatgacgtattgcttctccctgtcac 338 | || ||||| || | | ||||||||| |||||||| ||| ||| ||| | ||||| Sbjct: 208 cagtgtccagaagaagaattccaatcctgtctggaatgaagtactgcagctcgcagtcac 267 Query: 339 aaatcttacaaagccggtcaaacttgaggtttttgatgcggacacattcacagcggatga 398 ||||| ||||||||| || |||||||| ||||| |||| ||| | ||||||||| ||||| Sbjct: 268 aaatcctacaaagccagtaaaacttgaagttttcgatgaggataaattcacagcagatga 327 Query: 399 cagcatgggagtggctgagttcagcgtaactgatatctacgacgccgcaaagctggatct 458 ||||||||| || |||||||||| ||| ||||| |||||||| || || ||||||||||| Sbjct: 328 cagcatgggcgtagctgagttcaacgtgactgacatctacgatgctgctaagctggatct 387 Query: 459 aaagcatgcctctgacggaaccaggatcaagaccatctacccggttggcacaaactacct 518 |||||||| ||||||||| ||||||||||||| |||||||| ||||| ||||| || Sbjct: 388 aaagcatgtctctgacggggccaggatcaagacgatctacccagttggtgtgaactatct 447 Query: 519 cggcggcgagagccacgtgtcgtggacgaacggcaaggtcgtccaagacttgattctgaa 578 |||| ||||||||||| || |||| || |||||||||||||||||| | | |||||| Sbjct: 448 tggcgcagagagccacgtttcatggaaaaatggcaaggtcgtccaagacatcactctgaa 507 Query: 579 gctcaaggacgtcgacagtggctctg-tcgtgctgcaactggaatgggttcacgtccc 635 ||| | | || ||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 508 gctgagcaaggttgacagtggc-ctgatcgtgctgcagctggagtgggttcacgtccc 564
>emb|CT834271.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN061C10, full insert sequence Length = 887 Score = 297 bits (150), Expect = 3e-77 Identities = 398/478 (83%), Gaps = 2/478 (0%) Strand = Plus / Plus Query: 159 ggtgatcgggaagctcagcgtccgcgttgtccgaggccacaacctcatcgccgccgaccc 218 ||||||||||||||||| ||||||||| || || ||| |||||||||| ||||||||| Sbjct: 99 ggtgatcgggaagctcaacgtccgcgtggtgcggggctccaacctcatcatcgccgaccc 158 Query: 219 actcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaaggtgaagac 278 |||||||| |||||||||||||||| |||||||||||||||| | ||||| |||||||| Sbjct: 159 gctcacccacaccagcgacccctacgccgtcctctcctacggcccacagaaagtgaagac 218 Query: 279 ttgcgttcagaacaaaagtgtcaatcctgtatggaatgacgtattgcttctccctgtcac 338 | || ||||| || | | ||||||||| |||||||| ||| ||| ||| | ||||| Sbjct: 219 cagtgtccagaagaagaattccaatcctgtctggaatgaagtactgcagctcgcagtcac 278 Query: 339 aaatcttacaaagccggtcaaacttgaggtttttgatgcggacacattcacagcggatga 398 ||||| ||| |||||||| |||||||| ||||| |||| ||| | ||||||||| ||||| Sbjct: 279 aaatcctaccaagccggtaaaacttgaagttttcgatgaggataaattcacagcagatga 338 Query: 399 cagcatgggagtggctgagttcagcgtaactgatatctacgacgccgcaaagctggatct 458 ||||||||| || | ||||| || ||| ||||| |||||||| || || ||||||||||| Sbjct: 339 cagcatgggcgtaggtgagtgcaacgtgactgacatctacgatgctgctaagctggatct 398 Query: 459 aaagcatgcctctgacggaaccaggatcaagaccatctacccggttggcacaaactacct 518 |||||||| ||||||||| ||||||||||||| |||||||| ||||| ||||| || Sbjct: 399 aaagcatgtctctgacggggccaggatcaagacgatctacccagttggtgtgaactatct 458 Query: 519 cggcggcgagagccacgtgtcgtggacgaacggcaaggtcgtccaagacttgattctgaa 578 |||| |||||||||||| || |||| || ||||||||||| |||||| | | |||||| Sbjct: 459 tggcgccgagagccacgtttcatggaaaaatggcaaggtcgttcaagacatcactctgaa 518 Query: 579 gctcaaggacgtcgacagtggctctg-tcgtgctgcaactggaatgggttcacgtccc 635 ||| | | || ||||||||| ||| |||||||||| ||||| |||||||||||||| Sbjct: 519 gctgagcaaggttgacagtggc-ctgatcgtgctgcagctggagtgggttcacgtccc 575
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 170 bits (86), Expect = 5e-39 Identities = 226/270 (83%), Gaps = 2/270 (0%) Strand = Plus / Plus Query: 367 gtttttgatgcggacacattcacagcggatgacagcatgggagtggctgagttcagcgta 426 ||||| |||| ||| | ||||||||| |||||||||||||| || |||||||||| ||| Sbjct: 18788304 gttttcgatgaggataaattcacagcagatgacagcatgggcgtagctgagttcaacgtg 18788363 Query: 427 actgatatctacgacgccgcaaagctggatctaaagcatgcctctgacggaaccaggatc 486 ||||| |||||||| || || ||||||||||||||||||| ||||||||| |||||||| Sbjct: 18788364 actgacatctacgatgctgctaagctggatctaaagcatgtctctgacggggccaggatc 18788423 Query: 487 aagaccatctacccggttggcacaaactacctcggcggcgagagccacgtgtcgtggacg 546 ||||| |||||||| ||||| ||||| || |||| ||||||||||| || |||| Sbjct: 18788424 aagacgatctacccagttggtgtgaactatcttggcgcagagagccacgtttcatggaaa 18788483 Query: 547 aacggcaaggtcgtccaagacttgattctgaagctcaaggacgtcgacagtggctctg-t 605 || |||||||||||||||||| | | ||||||||| | | || ||||||||| ||| | Sbjct: 18788484 aatggcaaggtcgtccaagacatcactctgaagctgagcaaggttgacagtggc-ctgat 18788542 Query: 606 cgtgctgcaactggaatgggttcacgtccc 635 ||||||||| ||||| |||||||||||||| Sbjct: 18788543 cgtgctgcagctggagtgggttcacgtccc 18788572 Score = 125 bits (63), Expect = 3e-25 Identities = 93/103 (90%) Strand = Plus / Plus Query: 159 ggtgatcgggaagctcagcgtccgcgttgtccgaggccacaacctcatcgccgccgaccc 218 ||||||||||||||||| ||||||||| || || ||| |||||||||| ||||||||| Sbjct: 18786761 ggtgatcgggaagctcaacgtccgcgtggtgcggggctccaacctcatcatcgccgaccc 18786820 Query: 219 actcacccagaccagcgacccctacgtcgtcctctcctacggc 261 |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 18786821 gctcacccacaccagcgacccctacgtcgtcctctcctacggc 18786863 Score = 61.9 bits (31), Expect = 4e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 213 cgacccactcacccagaccagcgacccctacgtcgtcctctcctacggctcccag 267 |||||| |||||||| | |||||||||||||||||||||| | ||||||||||| Sbjct: 18858468 cgacccgctcacccacagcagcgacccctacgtcgtcctccgccacggctcccag 18858522
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 170 bits (86), Expect = 5e-39 Identities = 226/270 (83%), Gaps = 2/270 (0%) Strand = Plus / Plus Query: 367 gtttttgatgcggacacattcacagcggatgacagcatgggagtggctgagttcagcgta 426 ||||| |||| ||| | ||||||||| |||||||||||||| || |||||||||| ||| Sbjct: 120592 gttttcgatgaggataaattcacagcagatgacagcatgggcgtagctgagttcaacgtg 120651 Query: 427 actgatatctacgacgccgcaaagctggatctaaagcatgcctctgacggaaccaggatc 486 ||||| |||||||| || || ||||||||||||||||||| ||||||||| |||||||| Sbjct: 120652 actgacatctacgatgctgctaagctggatctaaagcatgtctctgacggggccaggatc 120711 Query: 487 aagaccatctacccggttggcacaaactacctcggcggcgagagccacgtgtcgtggacg 546 ||||| |||||||| ||||| ||||| || |||| ||||||||||| || |||| Sbjct: 120712 aagacgatctacccagttggtgtgaactatcttggcgcagagagccacgtttcatggaaa 120771 Query: 547 aacggcaaggtcgtccaagacttgattctgaagctcaaggacgtcgacagtggctctg-t 605 || |||||||||||||||||| | | ||||||||| | | || ||||||||| ||| | Sbjct: 120772 aatggcaaggtcgtccaagacatcactctgaagctgagcaaggttgacagtggc-ctgat 120830 Query: 606 cgtgctgcaactggaatgggttcacgtccc 635 ||||||||| ||||| |||||||||||||| Sbjct: 120831 cgtgctgcagctggagtgggttcacgtccc 120860 Score = 125 bits (63), Expect = 3e-25 Identities = 93/103 (90%) Strand = Plus / Plus Query: 159 ggtgatcgggaagctcagcgtccgcgttgtccgaggccacaacctcatcgccgccgaccc 218 ||||||||||||||||| ||||||||| || || ||| |||||||||| ||||||||| Sbjct: 119049 ggtgatcgggaagctcaacgtccgcgtggtgcggggctccaacctcatcatcgccgaccc 119108 Query: 219 actcacccagaccagcgacccctacgtcgtcctctcctacggc 261 |||||||| ||||||||||||||||||||||||||||||||| Sbjct: 119109 gctcacccacaccagcgacccctacgtcgtcctctcctacggc 119151
>emb|Y10787.1|SSY10787 S.stapfianus pSD.34 mRNA Length = 818 Score = 161 bits (81), Expect = 5e-36 Identities = 297/369 (80%) Strand = Plus / Plus Query: 213 cgacccactcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaaggt 272 |||||| ||||| || ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 133 cgacccgctcacgcacaccagcgacccctacgtcgtccttcactacggcgcccagaaggt 192 Query: 273 gaagacttgcgttcagaacaaaagtgtcaatcctgtatggaatgacgtattgcttctccc 332 ||| ||| | || ||||| || | |||||| |||||||| || || ||| || | Sbjct: 193 gaaaactagtgtccagaaaaagaaccccaatccagtatggaacgaagtgctgcagctgtc 252 Query: 333 tgtcacaaatcttacaaagccggtcaaacttgaggtttttgatgcggacacattcacagc 392 |||||||| | ||||||||| || | ||||| ||||| || | |||| ||||||||| Sbjct: 253 agtcacaaaccctacaaagccagtgcatcttgaagttttcgacgaagacaaattcacagc 312 Query: 393 ggatgacagcatgggagtggctgagttcagcgtaactgatatctacgacgccgcaaagct 452 ||||| |||||||| ||||||||| ||| | | ||||| ||||| || || |||||||| Sbjct: 313 agatgatagcatgggtgtggctgagatcaacttgactgacatctatgatgctgcaaagct 372 Query: 453 ggatctaaagcatgcctctgacggaaccaggatcaagaccatctacccggttggcacaaa 512 ||| || ||||| ||| ||||||| || |||||||||||||||||||| ||||| ||| Sbjct: 373 ggacctgaagcacgccgctgacggtactaggatcaagaccatctacccagttggggtaaa 432 Query: 513 ctacctcggcggcgagagccacgtgtcgtggacgaacggcaaggtcgtccaagacttgat 572 |||||| || || |||||||| || ||||| | | |||||||| |||||||||||||| Sbjct: 433 ctaccttggtggtgagagccatgttatgtggaaggatggcaaggttgtccaagacttgat 492 Query: 573 tctgaagct 581 |||||||| Sbjct: 493 cctgaagct 501
>ref|NM_001066255.1| Oryza sativa (japonica cultivar-group) Os07g0501700 (Os07g0501700) mRNA, complete cds Length = 964 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 213 cgacccactcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaa 269 |||||| |||||||| | |||||||||||||||||||||| | ||||||||||||| Sbjct: 261 cgacccgctcacccacagcagcgacccctacgtcgtcctccgccacggctcccagaa 317
>dbj|AK070911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068D10, full insert sequence Length = 963 Score = 65.9 bits (33), Expect = 2e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 213 cgacccactcacccagaccagcgacccctacgtcgtcctctcctacggctcccagaa 269 |||||| |||||||| | |||||||||||||||||||||| | ||||||||||||| Sbjct: 262 cgacccgctcacccacagcagcgacccctacgtcgtcctccgccacggctcccagaa 318
>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_F06 Length = 104419 Score = 61.9 bits (31), Expect = 4e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 213 cgacccactcacccagaccagcgacccctacgtcgtcctctcctacggctcccag 267 |||||| |||||||| | |||||||||||||||||||||| | ||||||||||| Sbjct: 58654 cgacccgctcacccacagcagcgacccctacgtcgtcctccgccacggctcccag 58708
>gb|AY111262.1| Zea mays CL57609_1 mRNA sequence Length = 862 Score = 48.1 bits (24), Expect = 0.054 Identities = 30/32 (93%) Strand = Plus / Minus Query: 221 tcacccagaccagcgacccctacgtcgtcctc 252 ||||||| | |||||||||||||||||||||| Sbjct: 636 tcacccacagcagcgacccctacgtcgtcctc 605
>gb|DQ244350.1| Zea mays clone 5343 mRNA sequence Length = 793 Score = 44.1 bits (22), Expect = 0.84 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 ccagcgacccctacgtcgtcct 251 |||||||||||||||||||||| Sbjct: 187 ccagcgacccctacgtcgtcct 208
>emb|AL158829.14| Human DNA sequence from clone RP11-406O23 on chromosome 9 Contains part of the AKAP2 (PALM2) gene for A kinase (PRKA) anchor protein 2 (paralemmin 2), a novel gene and a CpG island, complete sequence Length = 136723 Score = 44.1 bits (22), Expect = 0.84 Identities = 22/22 (100%) Strand = Plus / Plus Query: 726 agttggcactttgtggatgttg 747 |||||||||||||||||||||| Sbjct: 75314 agttggcactttgtggatgttg 75335
>gb|AC175686.7| Medicago truncatula chromosome 2 BAC clone mth2-15k4, complete sequence Length = 68497 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 tcaaacttgaggtttttgatg 376 ||||||||||||||||||||| Sbjct: 43012 tcaaacttgaggtttttgatg 43032
>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence Length = 134674 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 tcaaacttgaggtttttgatg 376 ||||||||||||||||||||| Sbjct: 126434 tcaaacttgaggtttttgatg 126454
>gb|AF288091.2| Thraustochytrium aureum mitochondrial DNA, partial genome Length = 31570 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 728 ttggcactttgtggatgttgt 748 ||||||||||||||||||||| Sbjct: 11893 ttggcactttgtggatgttgt 11913
>emb|AL590483.32| Human DNA sequence from clone RP11-278H7 on chromosome 1 Contains the 3' end of a novel gene (LOC339529), the ZNF238 gene for zinc finger protein 238, a novel gene and a CpG island, complete sequence Length = 98228 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 tccaccctgccgccagccacc 31 ||||||||||||||||||||| Sbjct: 54767 tccaccctgccgccagccacc 54747
>gb|AY103837.1| Zea mays PCO137419 mRNA sequence Length = 868 Score = 42.1 bits (21), Expect = 3.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 511 aactacctcggcggcgagagccacgtgtcgtggacgaacggcaag 555 |||| ||||| || |||||||||||||| |||| |||||||||| Sbjct: 547 aactgcctcgccgacgagagccacgtgtgctggaggaacggcaag 591
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ccggccgtcggcgatggcttc 152 ||||||||||||||||||||| Sbjct: 2435884 ccggccgtcggcgatggcttc 2435904 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 131,749,270 Number of extensions: 6703607 Number of successful extensions: 116582 Number of sequences better than 10.0: 19 Number of HSP's gapped: 116571 Number of HSP's successfully gapped: 29 Length of query: 884 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 862 Effective length of database: 18,508,616,841 Effective search space: 15954427716942 Effective search space used: 15954427716942 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
