Clone Information

BLAST Search Result

Clone Name	FLbaf104g20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	D10334:Os12g0236400	63	1e-10
2	AK069870:Os12g0236400	63	1e-10
3	AK059754:Os12g0236400	63	1e-10
4	D10335:Os11g0312400	60	7e-10
5	AK073605:Os11g0312400	60	7e-10
6	D10429:Os12g0236400	32	0.25
7	AK121658:Os06g0326000	32	0.25
8	AK109992:	30	0.74
9	AK109980:	30	1.3
10	AK064753:Os04g0524800	30	1.3
11	AK110282:	29	1.6
12	AK107609:Os07g0188700	29	1.6
13	AK073755:Os07g0188700	29	1.6
14	AK063957:Os07g0188700	29	1.6
15	AK110813:Os02g0492900	29	2.1
16	AY167575:Os03g0160100	29	2.2
17	AK111595:Os03g0160100	29	2.2
18	AK119644:Os06g0649000	28	2.8
19	AK106282:Os06g0649000	28	2.8
20	Os01g0790200:Os01g0790200	28	4.8
21	AY341853:Os01g0182700	28	4.8
22	Os06g0164500:Os06g0164500	27	6.3
23	AK071201:Os08g0290700	27	6.3
24	AK066654:Os10g0409500	27	6.3
25	AK064785:Os04g0441800	27	6.3
26	AK120704:Os02g0792800	27	8.2
27	AK105616:Os02g0792800	27	8.2
28	AK104809:Os08g0521800	27	8.2
29	AK067267:Os08g0521800	27	8.2
30	AK060680:Os03g0293100	27	8.2
31	AK059945:Os12g0225100	27	8.2

>D10334:Os12g0236400 |
          Length = 241
 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 29/35 (82%), Positives = 34/35 (97%)
 Frame = +2

Query: 185 MAANLEDVPSVDLITEVLRRAKCSSKPDKRIILVG 289
           MAANLEDVPS++L+TE+LRR KCSSKPDKR+ILVG
Sbjct: 1   MAANLEDVPSMELMTELLRRMKCSSKPDKRVILVG 35

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>AK069870:Os12g0236400 |
          Length = 241

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 29/35 (82%), Positives = 34/35 (97%)
 Frame = +2

Query: 185 MAANLEDVPSVDLITEVLRRAKCSSKPDKRIILVG 289
           MAANLEDVPS++L+TE+LRR KCSSKPDKR+ILVG
Sbjct: 1   MAANLEDVPSMELMTELLRRMKCSSKPDKRVILVG 35

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>AK059754:Os12g0236400 |
          Length = 241

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 29/35 (82%), Positives = 34/35 (97%)
 Frame = +2

Query: 185 MAANLEDVPSVDLITEVLRRAKCSSKPDKRIILVG 289
           MAANLEDVPS++L+TE+LRR KCSSKPDKR+ILVG
Sbjct: 1   MAANLEDVPSMELMTELLRRMKCSSKPDKRVILVG 35

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>D10335:Os11g0312400 |
          Length = 243

 Score = 60.5 bits (145), Expect = 7e-10
 Identities = 28/34 (82%), Positives = 32/34 (94%)
 Frame = +2

Query: 188 AANLEDVPSVDLITEVLRRAKCSSKPDKRIILVG 289
           AANLEDVPS+DL+ E+LRR KCSSKPDKR+ILVG
Sbjct: 4   AANLEDVPSMDLMNELLRRMKCSSKPDKRLILVG 37

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>AK073605:Os11g0312400 |
          Length = 243

 Score = 60.5 bits (145), Expect = 7e-10
 Identities = 28/34 (82%), Positives = 32/34 (94%)
 Frame = +2

Query: 188 AANLEDVPSVDLITEVLRRAKCSSKPDKRIILVG 289
           AANLEDVPS+DL+ E+LRR KCSSKPDKR+ILVG
Sbjct: 4   AANLEDVPSMDLMNELLRRMKCSSKPDKRLILVG 37

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>D10429:Os12g0236400 |
          Length = 128

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +2

Query: 248 KCSSKPDKRIILVG 289
           KCSSKPDKR+ILVG
Sbjct: 1   KCSSKPDKRVILVG 14

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>AK121658:Os06g0326000 |
          Length = 378

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 25/91 (27%), Positives = 38/91 (41%)
 Frame = -2

Query: 348 RRLRKKPCRWKQTKMQERVLPTRMMRLSGLELHLARRSTSVMRSTDGTSSRFAAISSPAA 169
           +R R +P ++  T +   V+P    + +      A +S +      G SS  AA    AA
Sbjct: 91  KRKRGRPRKYAVTDVPLAVVPPSPPKAAAAAGASAAQSPATPTLPPGFSSGLAAYGGAAA 150

Query: 168 GTEASRVA*PAAGAEASEIRKVEPAGGWNWQ 76
              A R A PA+G      ++  P G  N Q
Sbjct: 151 SQPAPRQAPPASGRVLPHKKRGRPPGSGNKQ 181

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>AK109992: |
          Length = 690

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = -2

Query: 492 TNKSGENQSPCEEYC-----S*FHQCGFKCPQFNSTHCKYEQIQMR*AQIRFPRRLRKKP 328
           T  +  +  PC+ YC     + F      C Q  +T     Q Q++ A +  PR LR+ P
Sbjct: 51  TAPTSNSSEPCDSYCHSQPSTSFQAPDVSCDQVKATASWMHQTQLQTA-VEVPRELRQNP 109

Query: 327 CRWKQTKMQERVLPTRMMRLS 265
            R   + + +   P  + R S
Sbjct: 110 RRTSSSAVTKSGRPPVLTRQS 130

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>AK109980: |
          Length = 1034

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -2

Query: 240 RSTSVMRSTDGTSSRFAAISSPAAGTEASRVA*PAAGAEASEIRKVEPAGG 88
           R  S+ +S   T S  AA++  AA  +ASR +  +  A+AS    V P GG
Sbjct: 535 RDPSLQKSLSPTPSHSAAVA--AAKADASRSSATSRAAQASSSNVVSPTGG 583

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>AK064753:Os04g0524800 |
          Length = 121

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
 Frame = -2

Query: 348 RRLRKKPCRWKQT------------------KMQERVLPTRMMRLSGLELHLARRSTSVM 223
           RR RKKP R  +T                   M ER  PT   R     LH     ++  
Sbjct: 24  RRTRKKPRRLAETLSEGMTPVVRDSFMTMMLNMMERRNPTTKARTVSCSLHDGTGLSANA 83

Query: 222 RSTDGTSSRFAAISSPAAGTEASRV 148
            STDG ++  ++ SSPA    A+ V
Sbjct: 84  CSTDGATASASSSSSPALPRAAAVV 108

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>AK110282: |
          Length = 1293

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -2

Query: 300  ERVLPTRMMRLSGLELHLARRS-TSVMRSTDGTSSRFAAISSPAAGTEASRVA*PAA-GA 127
            E V P  M     L LH  RR+ T    ++     R  + ++ AAG  A+  A  AA  A
Sbjct: 1046 EPVTPQHMRHDRYLRLHQHRRAATHAATASAAAVERHLSATAAAAGPSAAAAAAAAAHAA 1105

Query: 126  EASEIRKVEPAGGWNWQWDEGEG 58
             AS    V  AGG      +G+G
Sbjct: 1106 AASPTAAVAAAGGSAVTSSDGDG 1128

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>AK107609:Os07g0188700 |
          Length = 417

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 195 FAAISSPAAGTEASRVA*PAAGAEASEIRKVEPAGGWNWQWDEGEGLQV 49
           F + SS ++ + +S +  PAA + A+ +RK    GG N     GE L V
Sbjct: 58  FLSSSSSSSSSSSSTLVRPAASSHAASLRKPSSWGGGNGGGGGGEHLLV 106

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>AK073755:Os07g0188700 |
          Length = 606

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 195 FAAISSPAAGTEASRVA*PAAGAEASEIRKVEPAGGWNWQWDEGEGLQV 49
           F + SS ++ + +S +  PAA + A+ +RK    GG N     GE L V
Sbjct: 58  FLSSSSSSSSSSSSTLVRPAASSHAASLRKPSSWGGGNGGGGGGEHLLV 106

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>AK063957:Os07g0188700 |
          Length = 332

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 195 FAAISSPAAGTEASRVA*PAAGAEASEIRKVEPAGGWNWQWDEGEGLQV 49
           F + SS ++ + +S +  PAA + A+ +RK    GG N     GE L V
Sbjct: 58  FLSSSSSSSSSSSSTLVRPAASSHAASLRKPSSWGGGNGGGGGGEHLLV 106

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>AK110813:Os02g0492900 |
          Length = 381

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 461 VKNTAANSTNVDSSAPNSTPRIASMNKSR--CAEHRLDFPVDCERNLA 324
           VK       NVDSS+ + TP   + +KS+  C +  LD   DC +  +
Sbjct: 92  VKVLLVKGANVDSSSDHGTPLHVAASKSQDGCMKILLDHHADCNKTFS 139

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>AY167575:Os03g0160100 |
          Length = 1017

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 56  SPSPSSHCQFHPPAGSTFRISDASAPAAGHATRLASVPAAG 178
           SPSP+S     PPA S   +S +S  AA   T  A+  A G
Sbjct: 35  SPSPASSPSGGPPALSVSTVSSSSPSAAATPTGAAAAGAGG 75

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>AK111595:Os03g0160100 |
          Length = 1017

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 56  SPSPSSHCQFHPPAGSTFRISDASAPAAGHATRLASVPAAG 178
           SPSP+S     PPA S   +S +S  AA   T  A+  A G
Sbjct: 35  SPSPASSPSGGPPALSVSTVSSSSPSAAATPTGAAAAGAGG 75

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>AK119644:Os06g0649000 |
          Length = 339

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 68  SSHCQFHPP---AGSTFRISDASAPAAGHATRLASVPAAGEEMAANLEDVP 211
           + H Q  PP   A +  R     A AAG +T +A+     E+MAA L   P
Sbjct: 267 AKHSQHQPPPSAAAAVVRQQQEQAAAAGPSTEVAARKNLAEQMAATLTRDP 317

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>AK106282:Os06g0649000 |
          Length = 365

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +2

Query: 68  SSHCQFHPP---AGSTFRISDASAPAAGHATRLASVPAAGEEMAANLEDVP 211
           + H Q  PP   A +  R     A AAG +T +A+     E+MAA L   P
Sbjct: 293 AKHSQHQPPPSAAAAVVRQQQEQAAAAGPSTEVAARKNLAEQMAATLTRDP 343

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>Os01g0790200:Os01g0790200 |
          Length = 519

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 410 NWGHLNPHWWN*LQYSSQGDWFSPLLFVLPPN 505
           +W HL  +W+N   +SS G     +L+  PPN
Sbjct: 218 SWLHLAEYWYNSTYHSSLGTTPFEVLYGYPPN 249

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>AY341853:Os01g0182700 |
          Length = 424

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +2

Query: 59  PSPSSHCQFHPPAGSTFRISDASAPAAGHATRLASVPAAGEEMAA--NLEDVPSVDLITE 232
           PSPS+H    PP G      DA  P+   A R+  + +   E  +  N+     +DL   
Sbjct: 342 PSPSTHASHLPPRGQLVASVDACGPS--DADRIFPLRSTARETRSRGNINSSDLMDLSAI 399

Query: 233 VLRRAKCSSKPDKRI 277
            +     + +P+ ++
Sbjct: 400 AIAHCISTKQPNHKV 414

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>Os06g0164500:Os06g0164500 |
          Length = 370

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 40  PAPNLQPLSLIPLPVPPTRRLHLPNLGRLRA 132
           P P+LQP    PLP+PPT   H P   R+ A
Sbjct: 51  PPPSLQP-EPEPLPLPPTSPDHYPLAFRVSA 80

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>AK071201:Os08g0290700 |
          Length = 375

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 67  LIPLPVPPTRRLHLPNLGRLRA 132
           +I +PVP TR+ HLP L R  A
Sbjct: 64  VISIPVPETRKPHLPRLMRFLA 85

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>AK066654:Os10g0409500 |
          Length = 227

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = -1

Query: 169 RNGSKSSRVTC----GRRGGVRDSEGGAGGW 89
           R G  ++R  C    GR GG     GG GGW
Sbjct: 159 RGGGTNNRRNCNGNGGRSGGGLTDSGGGGGW 189

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>AK064785:Os04g0441800 |
          Length = 611

 Score = 27.3 bits (59), Expect = 6.3
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 95  AGSTFRISDASAPAAGHATRLASVPA 172
           AGS+FRI  AS  A  +A  LA VPA
Sbjct: 383 AGSSFRIPPASLQAIPYAMLLALVPA 408

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>AK120704:Os02g0792800 |
          Length = 539

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 178 PRRRNGSKSSRVTCGRRGGVRDSEGGAGGWV 86
           P+  +G+K  R  C R   VRDS+G    W+
Sbjct: 166 PQLPDGAKIPRNACARSYEVRDSQGVVWAWM 196

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>AK105616:Os02g0792800 |
          Length = 539

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 178 PRRRNGSKSSRVTCGRRGGVRDSEGGAGGWV 86
           P+  +G+K  R  C R   VRDS+G    W+
Sbjct: 166 PQLPDGAKIPRNACARSYEVRDSQGVVWAWM 196

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>AK104809:Os08g0521800 |
          Length = 260

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 107 FRISDASAPAAGHATRLASVPAAGEEMAANLEDVPSVDLITEVL-RRAKCSSKPDKRIIL 283
           FRIS  +A AAG      +  A+G   A    D     L      RRA+ S++  +RI++
Sbjct: 12  FRISSVAAVAAGRRRPWRAAAASGNAHAEAEGDEDGQSLSARARGRRARLSARRRERIVV 71

Query: 284 V 286
           V
Sbjct: 72  V 72

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>AK067267:Os08g0521800 |
          Length = 260

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 107 FRISDASAPAAGHATRLASVPAAGEEMAANLEDVPSVDLITEVL-RRAKCSSKPDKRIIL 283
           FRIS  +A AAG      +  A+G   A    D     L      RRA+ S++  +RI++
Sbjct: 12  FRISSVAAVAAGRRRPWRAAAASGNAHAEAEGDEDGQSLSARARGRRARLSARRRERIVV 71

Query: 284 V 286
           V
Sbjct: 72  V 72

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>AK060680:Os03g0293100 |
          Length = 244

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 56  SPSPSSHCQFHPPAGSTFRISDASAPAAGHATRLASVPAAGEEMAANLEDVPSVDLIT-- 229
           SP+ S H +  P A +     D +APAA  AT     PAA     +  ++ P    +T  
Sbjct: 64  SPARSKHARTCPAADN-----DRAAPAAQEATNTPPPPAAPSANGSPPQEPPKRAPLTAR 118

Query: 230 EVLRRAKCSSK 262
           E LR A+   K
Sbjct: 119 ERLRAARVLGK 129

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>AK059945:Os12g0225100 |
          Length = 216

 Score = 26.9 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 214 GGSHHRGAPPRQVQLQARQ 270
           GG+HH G PP Q Q +  Q
Sbjct: 154 GGAHHVGTPPNQQQTKPEQ 172


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 14,717,976
Number of extensions: 345452
Number of successful extensions: 1895
Number of sequences better than 10.0: 31
Number of HSP's gapped: 1892
Number of HSP's successfully gapped: 31
Length of query: 176
Length of database: 15,399,855
Length adjustment: 94
Effective length of query: 82
Effective length of database: 11,636,001
Effective search space: 954152082
Effective search space used: 954152082
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result