ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf104d23 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os08g15170:12008.t01391:unspliced-genomic ATP synthase epsilon chain, mitochondrial, putative, expressed| Length = 3159 Score = 133 bits (284), Expect(4) = 4e-36 Identities = 52/64 (81%), Positives = 58/64 (90%) Frame = +1 / +3 Query: 73 TMSAVTAAVPFWRAAGMTYIGYSNVCAALVRSCLKEPFKTELSSREKVHFSLSKWTDEKQ 252 TMSA TAAVPFWRAAGMTYIGYSNVCAALVR CLKEP K+E +SREKVHF++SKW D KQ Sbjct: 87 TMSATTAAVPFWRAAGMTYIGYSNVCAALVRRCLKEPHKSEAASREKVHFAISKWADGKQ 266 Query: 253 QKPT 264 +KP+ Sbjct: 267 EKPS 278 Score = 30.9 bits (61), Expect(4) = 4e-36 Identities = 12/15 (80%), Positives = 12/15 (80%) Frame = +2 / +2 Query: 326 LWSGLKNKFVR*QWI 370 LWS LKNKF *QWI Sbjct: 2984 LWSTLKNKFFL*QWI 3028 Score = 29.5 bits (58), Expect(4) = 4e-36 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +2 / +3 Query: 380 TMLLYLLIAPFLLDEPCETLVV 445 TMLL LLIA +LD+ CE LV+ Sbjct: 3039 TMLLSLLIALAVLDQ*CELLVL 3104 Score = 22.1 bits (42), Expect(4) = 4e-36 Identities = 7/20 (35%), Positives = 12/20 (60%) Frame = +2 / +1 Query: 446 WYSSERVYIHYVCRCFNIMY 505 WYSSER ++ + N+ + Sbjct: 3097 WYSSERDLLYAILLWMNLFW 3156 Score = 107 bits (228), Expect(3) = 1e-26 Identities = 49/64 (76%), Positives = 51/64 (79%) Frame = -1 / -3 Query: 263 VGFCCFSSVHLEREKWTFSREESSVLKGSLRQLRTSAAQTLE*PM*VIPAARQKGTAAVT 84 +GF C S HLE KWTFSRE +S L GSLR RT AAQTLE*PM*VIPAARQKGTAAV Sbjct: 277 LGFSCLPSAHLEMAKWTFSREAASDLWGSLRHRRTRAAQTLE*PM*VIPAARQKGTAAVV 98 Query: 83 ADIV 72 ADIV Sbjct: 97 ADIV 86 Score = 34.1 bits (68), Expect(3) = 1e-26 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 / -1 Query: 414 RKGAISKYNNIVSE*IHCHRTNLFLRPDHK 325 ++G ++ + + IHCHR NLF DHK Sbjct: 3072 QQGQLATIITLYDKQIHCHRKNLFFSVDHK 2983 Score = 22.6 bits (43), Expect(3) = 1e-26 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = -2 / -3 Query: 304 SPLHLIFIPHPCAQ 263 SP H +FI H C Q Sbjct: 2896 SPWHQMFIHHLCGQ 2855 Score = 57.0 bits (118), Expect = 1e-07 Identities = 26/36 (72%), Positives = 27/36 (75%) Frame = +3 / +2 Query: 129 HRLLQRLRGAGAELPQGALQDRALLPREGPLLPLQV 236 HRLLQRLR GA +PQGA Q R LPREGPL LQV Sbjct: 143 HRLLQRLRRPGAPVPQGAPQVRGRLPREGPLRHLQV 250 Score = 46.9 bits (96), Expect(3) = 9e-07 Identities = 18/21 (85%), Positives = 18/21 (85%) Frame = -3 / -2 Query: 162 HQRRADVGVADVGHPRRTPEG 100 HQ ADVGVADVGHPRR PEG Sbjct: 176 HQGGADVGVADVGHPRRAPEG 114 Score = 24.9 bits (48), Expect(3) = 9e-07 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = -1 / -2 Query: 374 NRSIVTERIYS 342 NRS VTERIYS Sbjct: 3032 NRSTVTERIYS 3000 Score = 23.5 bits (45), Expect(3) = 9e-07 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 / -3 Query: 444 TTRVSHGSSSRKGAISKYNNIV 379 +T+ SH SS AIS NNIV Sbjct: 3103 STKSSHH*SSTARAISNDNNIV 3038 Score = 46.4 bits (95), Expect(2) = 1e-04 Identities = 18/21 (85%), Positives = 18/21 (85%) Frame = +2 / +1 Query: 101 PSGVRRG*PTSATPTSARRWC 163 PSG RRG*PTSATPTSA WC Sbjct: 115 PSGARRG*PTSATPTSAPPWC 177 Score = 22.1 bits (42), Expect(2) = 1e-04 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +3 / +3 Query: 327 CGPVLRINSFGDNG 368 CG RINSF D+G Sbjct: 2985 CGQR*RINSFCDSG 3026
>LOC_Os10g32400:12010.t02553:unspliced-genomic oxygen evolving enhancer protein, putative, expressed| Length = 8244 Score = 33.1 bits (66), Expect = 1.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 / +3 Query: 401 IAPFLLDEPCETLVVWYSSERVYIHYVCRCFNIMYC 508 I+ LL PCE +++W S+ +YI++ + I C Sbjct: 6867 ISHHLLKLPCEVVLMWSKSDHIYIYHKTQIHRI*EC 6974
>LOC_Os10g32348:12010.t02548:unspliced-genomic psbP family protein, expressed| Length = 15197 Score = 33.1 bits (66), Expect = 1.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 / +1 Query: 401 IAPFLLDEPCETLVVWYSSERVYIHYVCRCFNIMYC 508 I+ LL PCE +++W S+ +YI++ + I C Sbjct: 13816 ISHHLLKLPCEVVLMWSKSDHIYIYHKTQIHRI*EC 13923
>LOC_Os07g47030:12007.t04339:unspliced-genomic expressed protein| Length = 8306 Score = 33.1 bits (66), Expect = 1.7 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -3 / -2 Query: 456 LEYHTTRVSHGSSSRKGAISKYNNIVSE*IHCHRTNLFLRPDHKSTNFSEHHH 298 LE + R ++K +S YN+I + * H + LF+ H+S S HH Sbjct: 2905 LENNYIREKCNFKAQKIKLSAYNDIFNH*YHANMP*LFISATHESKERSAGHH 2747
>LOC_Os06g19050:12006.t01728:unspliced-genomic cadmium tolerance factor, putative| Length = 2695 Score = 31.8 bits (63), Expect = 4.3 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = -3 / +3 Query: 462 RSLEYHTTRVSHGSSSRKGAISKYNNIVSE*IHCH 358 R++ YH T+V+ S + A+++++ IV * CH Sbjct: 1905 RTMSYHITQVTRSSCTTIHAVTRHSFIVIH*ASCH 2009
>LOC_Os03g47790:12003.t04140:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 6128 Score = 31.8 bits (63), Expect = 4.3 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 / -1 Query: 455 SERVYIHYVCRCFNIMYCTISLKLMNKLF*LY 550 S+ ++IH + CF I YC I + L +++ L+ Sbjct: 1808 SQPIFIHKLLLCFEINYCPICIPLSSRMHTLH 1713
>LOC_Os07g47180:12007.t04354:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 4457 Score = 31.3 bits (62), Expect = 6.0 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 / +2 Query: 476 NVYKHAHSSTTRQEFHMVHQV 414 +V+ H HSS R H++HQV Sbjct: 2654 HVFHHKHSSLKRNHMHVIHQV 2716
>LOC_Os04g51910:12004.t04667:unspliced-genomic 26S proteasome non-ATPase regulatory subunit 1, putative, expressed| Length = 4339 Score = 31.3 bits (62), Expect = 6.0 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = +3 / -3 Query: 423 NHVKLLSCGTRVSVFIY 473 NH K +SCG+++SVF+Y Sbjct: 2693 NHKKEVSCGSKLSVFVY 2643
>LOC_Os03g45850:12003.t03957:unspliced-genomic OsSAUR16 - Auxin-responsive SAUR gene family member| Length = 1680 Score = 30.9 bits (61), Expect = 8.2 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 / +1 Query: 366 HCHRTNLFLRPDHKSTN 316 HCHRTN L H+ TN Sbjct: 619 HCHRTNNILSSSHRKTN 669
>LOC_Os07g37790:12007.t03447:unspliced-genomic cell differentiation protein rcd1, putative, expressed| Length = 4117 Score = 29.9 bits (59), Expect(2) = 8.4 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 / -3 Query: 230 EREKWTFSREESSVLKGSL 174 ER KW FS+++ LKGSL Sbjct: 2147 ERGKWNFSQKQKQELKGSL 2091 Score = 22.1 bits (42), Expect(2) = 8.4 Identities = 6/8 (75%), Positives = 7/8 (87%) Frame = -3 / -2 Query: 321 TNFSEHHH 298 TNF +HHH Sbjct: 3045 TNFRQHHH 3022
>LOC_Os04g52340:12004.t04709:unspliced-genomic cell differentiation protein rcd1, putative, expressed| Length = 4557 Score = 29.9 bits (59), Expect(2) = 9.1 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -1 / -2 Query: 230 EREKWTFSREESSVLKGSL 174 ER KW FS+++ LKGSL Sbjct: 2144 ERGKWNFSQKQKQELKGSL 2088 Score = 22.1 bits (42), Expect(2) = 9.1 Identities = 6/8 (75%), Positives = 7/8 (87%) Frame = -3 / -2 Query: 321 TNFSEHHH 298 TNF +HHH Sbjct: 3041 TNFRQHHH 3018 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 191,111,729 Number of extensions: 2648251 Number of successful extensions: 10741 Number of sequences better than 10.0: 11 Length of query: 198 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 150 Effective length of database: 52,912,542 Effective search space: 7936881300 Effective search space used: 7936881300 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
