ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf101b07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 115 bits (58), Expect = 2e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 27867466 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 27867407 Query: 282 tcgatgtgag 291 ||| |||||| Sbjct: 27867406 tcgctgtgag 27867397
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 115 bits (58), Expect = 2e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 30824 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 30765 Query: 282 tcgatgtgag 291 ||| |||||| Sbjct: 30764 tcgctgtgag 30755
>ref|NM_001067074.1| Oryza sativa (japonica cultivar-group) Os07g0661600 (Os07g0661600) mRNA, complete cds Length = 1717 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Plus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 148 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 207 Query: 282 tcg 284 ||| Sbjct: 208 tcg 210
>dbj|AK104664.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G08, full insert sequence Length = 1156 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Plus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 144 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 203 Query: 282 tcg 284 ||| Sbjct: 204 tcg 206
>dbj|AK066432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064M13, full insert sequence Length = 1718 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Plus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 149 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 208 Query: 282 tcg 284 ||| Sbjct: 209 tcg 211
>dbj|AK065465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014C10, full insert sequence Length = 2953 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Plus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 144 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 203 Query: 282 tcg 284 ||| Sbjct: 204 tcg 206
>dbj|AK061123.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G05, full insert sequence Length = 1156 Score = 109 bits (55), Expect = 1e-20 Identities = 61/63 (96%) Strand = Plus / Plus Query: 222 atgggcaggtcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct: 144 atgggcaggtcgttcagggactcgctgaaggtgctcgaggccgacatccagcacgccaac 203 Query: 282 tcg 284 ||| Sbjct: 204 tcg 206
>ref|NM_001060817.1| Oryza sativa (japonica cultivar-group) Os04g0679800 (Os04g0679800) mRNA, complete cds Length = 1219 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 251 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 301
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 91400 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 91450
>emb|AL732341.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0213E10, complete sequence Length = 26755 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 2063 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 2113
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 34750138 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 34750188
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 55699 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 55749
>dbj|AK099987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130B11, full insert sequence Length = 1592 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 240 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 290
>dbj|AK060662.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B04, full insert sequence Length = 1219 Score = 69.9 bits (35), Expect = 1e-08 Identities = 47/51 (92%) Strand = Plus / Plus Query: 231 tcgttcagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||||||||||| |||||||||| ||||||||||| |||||| Sbjct: 251 tcgttcaaggactcgctcaaggtgctcgaggctgacatccagcatgccaac 301
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 239 ggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||| ||||||| || |||||||||||||||||| Sbjct: 65932 ggactcgttcaaggtgctcgaagctgacatccagcacgccaac 65974
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 239 ggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||| ||||| ||||||| || |||||||||||||||||| Sbjct: 18562521 ggactcgttcaaggtgctcgaagctgacatccagcacgccaac 18562563 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 ctcgaggccgacatccagcacgccaa 280 ||||||||||||||| |||||||||| Sbjct: 15572257 ctcgaggccgacatcgagcacgccaa 15572232
>gb|AY105141.1| Zea mays PCO120313 mRNA sequence Length = 1248 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 236 cagggactcgctcaagctgctcgaggccgacatccagcacgccaac 281 ||||||||| ||||| ||||||| || |||||||||||||||||| Sbjct: 189 cagggactccatcaaggtgctcgaagctgacatccagcacgccaac 234
>ref|NM_001071244.1| Oryza sativa (japonica cultivar-group) Os10g0445400 (Os10g0445400) mRNA, complete cds Length = 1103 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 ctcgaggccgacatccagcacgccaa 280 ||||||||||||||| |||||||||| Sbjct: 267 ctcgaggccgacatcgagcacgccaa 292
>gb|CP000441.1| Burkholderia cepacia AMMD chromosome 2, complete sequence Length = 2646969 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 ctcgccgagctcacccgccgcc 27 |||||||||||||||||||||| Sbjct: 1568838 ctcgccgagctcacccgccgcc 1568859
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 gccgctcgccgagctcacccgc 23 |||||||||||||||||||||| Sbjct: 2656637 gccgctcgccgagctcacccgc 2656616
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 255 ctcgaggccgacatccagcacgccaa 280 ||||||||||||||| |||||||||| Sbjct: 59623 ctcgaggccgacatcgagcacgccaa 59598
>dbj|AK067013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093E22, full insert sequence Length = 1192 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 255 ctcgaggccgacatccagcacgccaa 280 ||||||||||||||| |||||||||| Sbjct: 268 ctcgaggccgacatcgagcacgccaa 293
>gb|AC149878.2| Xenopus tropicalis clone CH216-26P2, complete sequence Length = 185685 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccccg 320 |||||||||||||||||||||| Sbjct: 115629 cttccctccctcctgctccccg 115650
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 cagattatatcgtctgccgta 531 ||||||||||||||||||||| Sbjct: 4957852 cagattatatcgtctgccgta 4957832
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 7 tcgccgagctcacccgccgccggag 31 |||||||||||||||| |||||||| Sbjct: 562999 tcgccgagctcacccggcgccggag 563023
>gb|AC009749.9| Drosophila melanogaster clone BACR40I04, complete sequence Length = 161276 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 511 cagattatatcgtctgccgta 531 ||||||||||||||||||||| Sbjct: 53299 cagattatatcgtctgccgta 53319
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gctcgccgagctcacccgccg 25 ||||||||||||||||||||| Sbjct: 22211 gctcgccgagctcacccgccg 22191
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gctcgccgagctcacccgccg 25 ||||||||||||||||||||| Sbjct: 88856 gctcgccgagctcacccgccg 88836
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gctcgccgagctcacccgccg 25 ||||||||||||||||||||| Sbjct: 277444 gctcgccgagctcacccgccg 277424
>gb|BT011033.1| Drosophila melanogaster RE44811 full insert cDNA Length = 2447 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 cagattatatcgtctgccgta 531 ||||||||||||||||||||| Sbjct: 2028 cagattatatcgtctgccgta 2008
>gb|AC112273.4| Mus musculus BAC clone RP24-122H5 from 3, complete sequence Length = 180155 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tccctcctgctccccgtgtgc 325 ||||||||||||||||||||| Sbjct: 107872 tccctcctgctccccgtgtgc 107892
>ref|NM_135039.1| Drosophila melanogaster Marcal1 CG3753-RA (Marcal1), mRNA Length = 2401 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 cagattatatcgtctgccgta 531 ||||||||||||||||||||| Sbjct: 2022 cagattatatcgtctgccgta 2002
>gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome 9, complete sequence Length = 184288 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 cttccctccctcctgctcccc 319 ||||||||||||||||||||| Sbjct: 18731 cttccctccctcctgctcccc 18711
>emb|AL929588.11| Mouse DNA sequence from clone RP23-87L24 on chromosome 2, complete sequence Length = 134787 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 cgcttccctccctcctgctcc 317 ||||||||||||||||||||| Sbjct: 75135 cgcttccctccctcctgctcc 75155
>gb|AC008233.3|AC008233 Drosophila melanogaster, chromosome 2L, region 25C-25C, BAC clone BACR13M11, complete sequence Length = 162387 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 cagattatatcgtctgccgta 531 ||||||||||||||||||||| Sbjct: 14155 cagattatatcgtctgccgta 14135
>gb|AC139320.4| Mus musculus BAC clone RP24-410G8 from 9, complete sequence Length = 176888 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 cttccctccctcctgctcccc 319 ||||||||||||||||||||| Sbjct: 165684 cttccctccctcctgctcccc 165664
>gb|AC162280.4| Mus musculus chromosome 3, clone RP24-240C19, complete sequence Length = 165299 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tccctcctgctccccgtgtgc 325 ||||||||||||||||||||| Sbjct: 99 tccctcctgctccccgtgtgc 119
>ref|XM_783272.2| PREDICTED: Strongylocentrotus purpuratus similar to TBP-associated factor 172 (LOC583360), partial mRNA Length = 1698 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 cagcttgctgctgttgtttg 344 |||||||||||||||||||| Sbjct: 452 cagcttgctgctgttgtttg 433
>ref|NM_001053847.1| Oryza sativa (japonica cultivar-group) Os02g0595300 (Os02g0595300) mRNA, complete cds Length = 984 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 atggtcgcggcggcgccgcg 183 |||||||||||||||||||| Sbjct: 892 atggtcgcggcggcgccgcg 911
>emb|BX571845.6| Zebrafish DNA sequence from clone DKEY-18P12 in linkage group 9, complete sequence Length = 106944 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 2614 cttccctccctcctgctccc 2633
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 20982488 tgcagcttgctgctgttgtt 20982507
>ref|XM_001076954.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230206N24 (predicted) (RGD1562419_predicted), mRNA Length = 3761 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 432 ttctgctcgtgctgctgccatgcc 455 |||||||| ||||||||||||||| Sbjct: 173 ttctgctcttgctgctgccatgcc 196
>ref|XM_578374.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA B230206N24 (predicted) (RGD1562419_predicted), mRNA Length = 3761 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 432 ttctgctcgtgctgctgccatgcc 455 |||||||| ||||||||||||||| Sbjct: 173 ttctgctcttgctgctgccatgcc 196
>gb|AC160142.4| Pan troglodytes BAC clone CH251-350E17 from chromosome unknown, complete sequence Length = 199482 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 93943 cttccctccctcctgctccc 93962 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 193710 cttccctccctcctgctccc 193729
>gb|AY764181.1| Aplysia californica neuron-specific staufen mRNA, complete cds Length = 6200 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tgtgcagcttgctgctgttg 340 |||||||||||||||||||| Sbjct: 777 tgtgcagcttgctgctgttg 758
>gb|AY531111.1| Photorhabdus sp. Az29 SAM-dependent methyltransferase-like protein, secreted alkaline metalloprotease (prtA), putative PrtA-specific inhibitor precursor (inh), PrtB (prtB), PrtC (prtC), and PrtD (prtD) genes, complete cds Length = 9270 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 ttggcgccggaggggttggg 153 |||||||||||||||||||| Sbjct: 5748 ttggcgccggaggggttggg 5767
>ref|NM_145761.1| Drosophila melanogaster Tyrosine kinase-related protein CG16778-RC, transcript variant C (Tkr), mRNA Length = 4435 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 1665 tgcagcttgctgctgttgtt 1646
>ref|NM_001014554.1| Drosophila melanogaster Tyrosine kinase-related protein CG16778-RD, transcript variant D (Tkr), mRNA Length = 4685 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 1915 tgcagcttgctgctgttgtt 1896
>ref|NM_138150.2| Drosophila melanogaster Tyrosine kinase-related protein CG16778-RA, transcript variant A (Tkr), mRNA Length = 4731 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 1961 tgcagcttgctgctgttgtt 1942
>ref|NM_079141.2| Drosophila melanogaster Tyrosine kinase-related protein CG16778-RB, transcript variant B (Tkr), mRNA Length = 4431 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 1661 tgcagcttgctgctgttgtt 1642
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 tcgcggcggcgccgcgctgg 187 |||||||||||||||||||| Sbjct: 452362 tcgcggcggcgccgcgctgg 452381
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 ctgttctgctcgtgctgctgccat 452 |||||||||||| ||||||||||| Sbjct: 16224949 ctgttctgctcgggctgctgccat 16224972
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 atggtcgcggcggcgccgcg 183 |||||||||||||||||||| Sbjct: 23118369 atggtcgcggcggcgccgcg 23118350
>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the 5'end of a novel gene (FLJ00318), a novel gene and two CpG islands, complete sequence Length = 156466 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cctccctcctgctccccgtg 322 |||||||||||||||||||| Sbjct: 6402 cctccctcctgctccccgtg 6421
>gb|AC109319.17| Homo sapiens chromosome 17, clone RP11-899O23, complete sequence Length = 99701 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 agtagcactggtgccgctcctcct 214 |||||||||||||||||| ||||| Sbjct: 86966 agtagcactggtgccgctgctcct 86943
>gb|AC021754.6| Homo sapiens chromosome 15 clone RP11-263I19 map 15q15, complete sequence Length = 172474 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 4220 cttccctccctcctgctccc 4239 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 104589 cttccctccctcctgctccc 104608
>gb|AC018512.6| Homo sapiens chromosome 15 clone RP11-296A16 map 15q15, complete sequence Length = 171641 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 19592 cttccctccctcctgctccc 19611
>gb|AC011330.8| Homo sapiens chromosome 15 clone RP11-315A19 map 15q15, complete sequence Length = 185421 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 73969 cttccctccctcctgctccc 73988 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 173449 cttccctccctcctgctccc 173468
>gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR17E16, complete sequence Length = 180162 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 97686 tgcagcttgctgctgttgtt 97667
>gb|AC016135.3| Homo sapiens chromosome 15 clone RP11-86F12 map 15q15, complete sequence Length = 167952 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 cttccctccctcctgctccc 318 |||||||||||||||||||| Sbjct: 100594 cttccctccctcctgctccc 100613
>gb|AY122101.2| Drosophila melanogaster GH08821 full insert cDNA Length = 4129 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 1964 tgcagcttgctgctgttgtt 1945
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 gatggtcgcggcggcgccgcgctg 186 |||||||||||||| ||||||||| Sbjct: 269951 gatggtcgcggcggtgccgcgctg 269928
>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1126_D09 Length = 138615 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 atggtcgcggcggcgccgcg 183 |||||||||||||||||||| Sbjct: 85407 atggtcgcggcggcgccgcg 85388
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccggattggtggcgcggag 109 |||||||||||||||||||| Sbjct: 6276674 gccggattggtggcgcggag 6276655
>dbj|AP004742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0026F02 Length = 132237 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 ctgttctgctcgtgctgctgccat 452 |||||||||||| ||||||||||| Sbjct: 49841 ctgttctgctcgggctgctgccat 49864
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 429 ctgttctgctcgtgctgctgccat 452 |||||||||||| ||||||||||| Sbjct: 129742 ctgttctgctcgggctgctgccat 129765
>gb|AC091172.11| Homo sapiens chromosome 17, clone RP11-156E6, complete sequence Length = 178345 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 agtagcactggtgccgctcctcct 214 |||||||||||||||||| ||||| Sbjct: 9236 agtagcactggtgccgctgctcct 9213
>dbj|AK066173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055M08, full insert sequence Length = 3551 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 429 ctgttctgctcgtgctgctgccat 452 |||||||||||| ||||||||||| Sbjct: 1322 ctgttctgctcgggctgctgccat 1299
>ref|XM_556108.1| Anopheles gambiae str. PEST ENSANGP00000026287 (ENSANGG00000022624), partial mRNA Length = 2706 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tcaagctgctcgaggccgac 266 |||||||||||||||||||| Sbjct: 2024 tcaagctgctcgaggccgac 2043
>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC class II antigen (DSB), MHC class II antigen (DYA), MHC class II antigen (DYB), MHC class II antigen (DOB), transporter 2 ATP-binding cassette sub-family B (TAP2), proteasome subunit beta type 8 (PSMB8), transporter 1 ATP-binding cassette sub-family B (TAP1), proteosome subunit beta type 9 (PSMB9), histone H2B-like (H2B), MHC class II antigen (DMB), MHC class II antigen (DMA), bromodomain containing 2 (BRD2), MHC class II antigen (DOA), collagen type XI alpha 2 (COL11A2), retinoid X receptor beta (RXRB), solute carrier family 39 zinc transporter member 7 (HKE4), and hydroxysteroid (17-beta) dehydrogenase 8 (HKE6) genes, complete cds; and ring finger protein 1 (RING1) gene, partial cds Length = 447010 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gagctgggtgggggtgttgc 379 |||||||||||||||||||| Sbjct: 184332 gagctgggtgggggtgttgc 184351
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cgcggcggcgccgcgctgga 188 |||||||||||||||||||| Sbjct: 4288580 cgcggcggcgccgcgctgga 4288561
>emb|AJ252174.1|DME252174 Drosophila melanogaster mRNA for TKR protein (tkr gene) Length = 4453 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tgcagcttgctgctgttgtt 342 |||||||||||||||||||| Sbjct: 1697 tgcagcttgctgctgttgtt 1678 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 95,313,970 Number of extensions: 5934466 Number of successful extensions: 123736 Number of sequences better than 10.0: 72 Number of HSP's gapped: 123736 Number of HSP's successfully gapped: 76 Length of query: 623 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 601 Effective length of database: 18,508,616,841 Effective search space: 11123678721441 Effective search space used: 11123678721441 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
