ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf100o05 |
|---|---|
| Clone Library Name | barley_pub |
>O95684:FR1OP_HUMAN FGFR1 oncogene partner - Homo sapiens (Human)| Length = 399 Score = 62.8 bits (151), Expect = 2e-09 Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 10/240 (4%) Frame = +3 Query: 105 AREMMELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCND 284 A E EL+ L+ +TLE GVL +I+AELRA+VF N+ Sbjct: 10 AEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPL---------VNE 60 Query: 285 RAKQLHASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKNGAEG 464 K+ + GRL+ +L+ E+L++ L T+ V+ PE + + E + + G Sbjct: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRE--NLARDLGIIE 118 Query: 465 SRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPT-------LNTEHRNMRRPP 623 + GP+LL+V+ RR E PT L+ H + P Sbjct: 119 AEGTVGGPLLLEVI----------------RRCQQKEKGPTTGEGALDLSDVHSPPKSPE 162 Query: 624 SSSSVAGLP---PMGRQMQPSQTSDRRGGSSASNTRKDEYNWGYDADDLSEEVLRTSTAL 794 +S P P + +TS ++ G +N DE N + LSE ++S L Sbjct: 163 GKTSAQTTPSKIPRYKGQGKKKTSGQKAGDKKAN---DEANQSDTSVSLSEPKSKSSLHL 219
>Q4V7C1:FR1OP_RAT FGFR1 oncogene partner - Rattus norvegicus (Rat)| Length = 399 Score = 59.7 bits (143), Expect = 2e-08 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 3/212 (1%) Frame = +3 Query: 105 AREMMELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCND 284 A E EL+ L+ +TLE GVL +I+AELRA+VF N+ Sbjct: 10 AEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPL---------VNE 60 Query: 285 RAKQLHASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKNGAEG 464 K+ + GRL+ +L+ E+L++ L T+ V+ PE + + E + + G Sbjct: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQGLEGRE--NLARDLGIIE 118 Query: 465 SRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPTLNTEHRNMRRPPSSSSVAG 644 + GP+LL+V+ Q + G V D L+ H + P +SV Sbjct: 119 AEGTVGGPLLLEVI-------RRCQQKEKGPTSVEGALD--LSDGHPPSKSPEGKTSVNS 169 Query: 645 LP---PMGRQMQPSQTSDRRGGSSASNTRKDE 731 P P + +TS ++ G +++ + Sbjct: 170 TPSKIPRYKGQGKKKTSGQKSGDKKTSSETSQ 201
>Q4R7V3:FR1OP_MACFA FGFR1 oncogene partner - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 379 Score = 58.9 bits (141), Expect = 4e-08 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 13/232 (5%) Frame = +3 Query: 105 AREMMELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCND 284 A E EL+ L+ +TLE GVL +I+AELRA+VF N+ Sbjct: 10 AEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPL---------VNE 60 Query: 285 RAKQLHASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKNGAEG 464 K+ + GRL+ +L+ E+L++ L T+ V+ PE + + E + + G Sbjct: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGRE--NLARDLGIIE 118 Query: 465 SRSAESGPMLLDVLEGYLKYE----------NLSQTRMAGRRMVNSESDPTLNTEHRNMR 614 + GP+LL+V+ + E +LS + S T ++ N Sbjct: 119 AEGTVGGPLLLEVIRRCQQKEKGPTTGEGALDLSDVHPPPKSPEGKTSAQTTPSKKANNE 178 Query: 615 RPPSSSSVAGLPPMGRQMQPSQTSDRRGGSSASNTR---KDEYNWGYDADDL 761 S +SV+ P + + + + GS SN KD+ D DD+ Sbjct: 179 ANQSDTSVSLSEPKSKSSLHLLSHETKIGSFLSNKTLDGKDKAGLCPDEDDM 230
>Q2YDD1:FR1OP_BOVIN FGFR1 oncogene partner - Bos taurus (Bovine)| Length = 399 Score = 58.5 bits (140), Expect = 5e-08 Identities = 51/204 (25%), Positives = 83/204 (40%) Frame = +3 Query: 105 AREMMELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCND 284 A E EL+ L+ +TLE GVL +I+AELRA+VF N+ Sbjct: 10 AEEDTELRYLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPL---------VNE 60 Query: 285 RAKQLHASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKNGAEG 464 K+ + GRL+ +L+ E+L++ L T+ V+ PE + + E + + G Sbjct: 61 SLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFQPETSTFQGLEGRE--NLARDLGIIE 118 Query: 465 SRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPTLNTEHRNMRRPPSSSSVAG 644 + GP+LL+V+ + E + + + S P PPS Sbjct: 119 AEGTVGGPLLLEVIRRCQQKEKALTSGEGALDLSDVHSPPKSPEGKTGAHTPPSK----- 173 Query: 645 LPPMGRQMQPSQTSDRRGGSSASN 716 +P Q + + G ASN Sbjct: 174 IPRYKGQGNKKTSGQQPGAKKASN 197
>Q66JX5:FR1OP_MOUSE FGFR1 oncogene partner - Mus musculus (Mouse)| Length = 399 Score = 57.0 bits (136), Expect = 1e-07 Identities = 49/182 (26%), Positives = 77/182 (42%) Frame = +3 Query: 105 AREMMELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCND 284 A E EL+ L+ +TLE GVL +I+AELRA+VF N+ Sbjct: 10 AEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPL---------VNE 60 Query: 285 RAKQLHASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLPKDFWKNELKDFSNKNGAEG 464 K+ + GRL+ +L+ E+L++ L T+ V+ PE + + E + + G Sbjct: 61 NLKKFLNTKDGRLVASLVAEFLQFFNLDFTLAVFHPETSTIQGLEGRE--NLAQDLGIIE 118 Query: 465 SRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPTLNTEHRNMRRPPSSSSVAG 644 + GP+LL+V+ Q + G V D L+ H + P SS Sbjct: 119 AEGTVGGPLLLEVI-------RRCQQKEKGPASVEGALD--LSDGHPPSKSPEGKSSANS 169 Query: 645 LP 650 P Sbjct: 170 TP 171
>Q96NB1:CP063_HUMAN LisH domain-containing protein C16orf63 - Homo sapiens (Human)| Length = 174 Score = 44.7 bits (104), Expect = 7e-04 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 7/167 (4%) Frame = +3 Query: 120 ELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCNDRAKQL 299 ELK ++ TLEKKGVL ++A +RA VF +DR + Sbjct: 6 ELKAVLKDTLEKKGVLGHLKARIRAEVFNALD---------------------DDREPRP 44 Query: 300 HASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLP-----KDFWKNELKDFSNKNGAEG 464 S L+ LI EYLE+ + +T V + E P + F +EL F Sbjct: 45 SLSHENLLINELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIHELNAFEESKD--- 101 Query: 465 SRSAESGPMLLDVLEGYLK--YENLSQTRMAGRRMVNSESDPTLNTE 599 + P+L +L +L+ + + + G + SDP+L + Sbjct: 102 ----NTIPLLYGILAHFLRGTKDGIQNAFLKGPSL--QPSDPSLGRQ 142
>Q9CZS3:CP063_MOUSE LisH domain-containing protein C16orf63 homolog - Mus musculus| (Mouse) Length = 174 Score = 43.9 bits (102), Expect = 0.001 Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 5/139 (3%) Frame = +3 Query: 120 ELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCNDRAKQL 299 ELK ++ TLEK+GVL ++A +RA VF +DR + Sbjct: 6 ELKAVLKDTLEKRGVLGHLKARIRAEVFNALD---------------------DDREPRP 44 Query: 300 HASSSGRLLTALIGEYLEWAQLSHTMKVYLPECNLP-----KDFWKNELKDFSNKNGAEG 464 S L+ LI EYLE+ + +T V + E P + F EL F Sbjct: 45 SLSHENLLINELIREYLEFNKYKYTASVLIAESGQPVVPLDRQFLIRELNAFEESKD--- 101 Query: 465 SRSAESGPMLLDVLEGYLK 521 S P+L +L +L+ Sbjct: 102 ----NSIPLLYGILAHFLR 116
>Q5ZJ24:CP063_CHICK LisH domain-containing protein C16orf63 homolog - Gallus gallus| (Chicken) Length = 175 Score = 42.7 bits (99), Expect = 0.003 Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 10/185 (5%) Frame = +3 Query: 120 ELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCNDRAKQL 299 ELK ++ TLEK+G L +I+A +RA VF AL R Sbjct: 6 ELKAVLKDTLEKRGALRQIKARIRAEVFN------------------ALDDQSEPRPPLC 47 Query: 300 HASSSGRLLTALIGEYLEWAQLSHTMKVYL-----PECNLPKDFWKNELKDFSNKNGAEG 464 H L+ LI EYLE+ + ++ V PE L + F EL + NG Sbjct: 48 H---ENLLINELIREYLEFNKYKYSASVLTAEAGQPEVPLDRQFLVKELNIVEDANG--- 101 Query: 465 SRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPTLN-----TEHRNMRRPPSS 629 +S P+L ++ +L + ++ + V+ S P N TE R P Sbjct: 102 ----KSVPLLYGIISHFL-HRGKEESTQSTLPKVSLLSYPRQNLAKPSTERNQKDRIPEP 156 Query: 630 SSVAG 644 +AG Sbjct: 157 GRMAG 161
>Q4V7R8:CP063_XENLA LisH domain-containing protein C16orf63 homolog - Xenopus laevis| (African clawed frog) Length = 169 Score = 40.4 bits (93), Expect = 0.013 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Frame = +3 Query: 120 ELKTLVTRTLEKKGVLAKIRAELRASVFXXXXXXXXXXXXXXXGGNPALLGSCNDRAKQL 299 +LK +V TLEK+GV+ +++A +RA VF + +DR++ Sbjct: 6 DLKAVVKDTLEKRGVMGQLKARVRAEVFE----------------------ALDDRSEPK 43 Query: 300 HA-SSSGRLLTALIGEYLEWAQLSHTMKVY-----LPECNLPKDFWKNELKDFSNKNGAE 461 S L+ LI EYL + + S+T V L E L + F EL + N Sbjct: 44 PVLSPENLLINELIREYLAFNKYSYTSSVLTAETGLSEVPLDRSFLTKELNVVEDLN--- 100 Query: 462 GSRSAESGPMLLDVLEGYLK 521 ++S P+L ++ +LK Sbjct: 101 ----SQSVPILYGIVAHFLK 116
>Q9M401:BCAT3_ARATH Branched-chain-amino-acid aminotransferase 3, chloroplast precursor| - Arabidopsis thaliana (Mouse-ear cress) Length = 413 Score = 32.3 bits (72), Expect = 3.5 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Frame = +3 Query: 285 RAKQLHASSSGRLLTALIGEYLEWAQLSHTMK----VYLPECNLPKDFWKNELKDFSNKN 452 R + ++SS L+T L ++W + +K +Y+ +CN+ +F K EL+ F N Sbjct: 60 RCNAVSSNSSSTLVTELAD--IDWDTVGFGLKPADYMYVMKCNIDGEFSKGELQRFGNIE 117 Query: 453 GAEGSRSAESGPMLLDVLEGYLK 521 + + G L + L+ Y K Sbjct: 118 ISPSAGVLNYGQGLFEGLKAYRK 140
>P32569:MED17_YEAST RNA polymerase II mediator complex subunit 17 - Saccharomyces| cerevisiae (Baker's yeast) Length = 687 Score = 31.6 bits (70), Expect = 6.0 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = +3 Query: 411 DFWKNELKDFSNKNGAEGSRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPTL 590 D+W ++ SNK+ R SG LL + G YE+ T R + N + Sbjct: 307 DYWNKIMQSISNKDVIFKIRDRTSGQKLLAIKYG---YEDSGSTYKHDRGIANIRN---- 359 Query: 591 NTEHRNMRRPPSSSSV 638 N E +N+ P SSSV Sbjct: 360 NIESQNLDLIPHSSSV 375
>Q47LI6:RPOC_THEFY DNA-directed RNA polymerase beta' chain - Thermobifida fusca (strain| YX) Length = 1291 Score = 31.2 bits (69), Expect = 7.9 Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 24/130 (18%) Frame = +3 Query: 426 ELKDFSNKNGAEGSRSAESGPMLLDVLEGYLKYENL-------SQTRMAGRRMVNSESDP 584 + ++ + + AEG + A + P+LL + + L E+ TR+ ++ +SDP Sbjct: 1160 KFEEINRRVVAEGGQPASARPVLLGITKASLATESWLSAASFQETTRVLTENAIHGKSDP 1219 Query: 585 TLNT-----------------EHRNMRRPPSSSSVAGLPPMGRQMQPSQTSDRRGGSSAS 713 L ++RN+R P+ + A + + +PS+ + +G A Sbjct: 1220 LLGLKENVIIGKLIPAGTGMPQYRNIRVEPTEEAKASMYSVSSYEEPSEYTFGQGSGEA- 1278 Query: 714 NTRKDEYNWG 743 ++Y++G Sbjct: 1279 -VPLEDYDFG 1287
>P49412:PRIB_LENED Protein priB - Lentinula edodes (Shiitake mushroom) (Lentinus| edodes) Length = 565 Score = 31.2 bits (69), Expect = 7.9 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Frame = +3 Query: 462 GSRSAESGPMLLDVLEGYLKYENLSQTRMAGRRMVNSESDPTL--------NTEHRNMRR 617 GS+ +E+ ML + +G ++ + + A +S P+L N + Sbjct: 62 GSKLSEASKMLRRLEKGLNSAKSKAFSIDARHSSSYRDSHPSLGEPDDRYTNGVRSHPYS 121 Query: 618 PPSSSSVAGLPPMGRQMQPSQTSDRRGGSSASNTRKDEYNWGYDADDLSEE 770 PP+ V+ LPP+ P S+ S++S T + G A D +E+ Sbjct: 122 PPNGQFVSNLPPLNLPSYPDAASEYTASSTSSRTLDANDDEGDSASDRAED 172
>Q9UBZ4:APEX2_HUMAN DNA-(apurinic or apyrimidinic site) lyase 2 - Homo sapiens (Human)| Length = 518 Score = 31.2 bits (69), Expect = 7.9 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -3 Query: 976 LQH---TRAQSTINRKQIQKSQGEPSKPTAHWSSSTLRFYSAPLPGCLQ 839 LQH TR Q+ N+ Q++ ++ +PS+ + L+ Y P P C Q Sbjct: 357 LQHNNQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNLKSYFQPSPSCPQ 405 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 182,793,297 Number of extensions: 4010791 Number of successful extensions: 11564 Number of sequences better than 10.0: 14 Number of HSP's gapped: 11547 Number of HSP's successfully gapped: 14 Length of query: 365 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 250 Effective length of database: 69,142,514 Effective search space: 17285628500 Effective search space used: 17285628500 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
