| Clone Name | FLbaf100n14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001057696.1| Oryza sativa (japonica cultivar-group) Os03g0730400 (Os03g0730400) mRNA, complete cds Length = 1674 Score = 109 bits (55), Expect = 4e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 232 cgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccg 291 Query: 145 ggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtggagtcag 204 |||| | | ||||||||||||||||| | |||||||||||||||||||| || || | Sbjct: 292 ggtatgttggtgtggacgaggagacgggcactgagctcttctactacttcgttgaatcgg 351 Query: 205 agaggag 211 ||||||| Sbjct: 352 agaggag 358 Score = 65.9 bits (33), Expect = 5e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 274 tctttgaagttggtcctatgaaatttgtgctggcaccttataatggtagtttgccacagt 333 |||||||||| || |||||||||| ||| ||| |||||||||||||||||||||| | Sbjct: 427 tctttgaagtaggacctatgaaatacgtgttggagccttataatggtagtttgccacgat 486 Query: 334 tggcctataatccatattcatggtccaagacagcaaacatcatcttattggattcaccag 393 ||| ||||||| ||||||||| | ||| |||| |||| |||| ||||| | || | Sbjct: 487 tggtttataatcagtattcatggacacagatggcaagcatcctcttcttggacactcctg 546 Query: 394 tgggtactggtttctcgtacgctcgtgat 422 | ||| |||||||||| ||||||| |||| Sbjct: 547 ttggttctggtttctcatacgctcatgat 575 Score = 50.1 bits (25), Expect = 0.031 Identities = 90/114 (78%) Strand = Plus / Plus Query: 459 tctttgcatgtcttaatatttctcaacaagtggtttatcgatcacccacgctaccnnnnn 518 |||||||| ||| ||| |||||| || |||||||| | |||||||||||||| | Sbjct: 609 tctttgcaagtcgtaacatttctgaagaagtggttcaatgatcacccacgctatctctca 668 Query: 519 nntcctttctttattggaggaagttcatatgctggaaagatgtctccaattatc 572 || ||||| | |||||||||| ||||| ||||||||| || |||||||||| Sbjct: 669 aatcatttctatgttggaggaagctcatacgctggaaaggtgattccaattatc 722
>dbj|AK104942.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A07, full insert sequence Length = 510 Score = 109 bits (55), Expect = 4e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 200 cgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccg 259 Query: 145 ggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtggagtcag 204 |||| | | ||||||||||||||||| | |||||||||||||||||||| || || | Sbjct: 260 ggtatgttggtgtggacgaggagacgggcactgagctcttctactacttcgttgaatcgg 319 Query: 205 agaggag 211 ||||||| Sbjct: 320 agaggag 326
>dbj|AK067912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128F10, full insert sequence Length = 1677 Score = 109 bits (55), Expect = 4e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 235 cgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccg 294 Query: 145 ggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtggagtcag 204 |||| | | ||||||||||||||||| | |||||||||||||||||||| || || | Sbjct: 295 ggtatgttggtgtggacgaggagacgggcactgagctcttctactacttcgttgaatcgg 354 Query: 205 agaggag 211 ||||||| Sbjct: 355 agaggag 361 Score = 65.9 bits (33), Expect = 5e-07 Identities = 120/149 (80%) Strand = Plus / Plus Query: 274 tctttgaagttggtcctatgaaatttgtgctggcaccttataatggtagtttgccacagt 333 |||||||||| || |||||||||| ||| ||| |||||||||||||||||||||| | Sbjct: 430 tctttgaagtaggacctatgaaatacgtgttggagccttataatggtagtttgccacgat 489 Query: 334 tggcctataatccatattcatggtccaagacagcaaacatcatcttattggattcaccag 393 ||| ||||||| ||||||||| | ||| |||| |||| |||| ||||| | || | Sbjct: 490 tggtttataatcagtattcatggacacagatggcaagcatcctcttcttggacactcctg 549 Query: 394 tgggtactggtttctcgtacgctcgtgat 422 | ||| |||||||||| ||||||| |||| Sbjct: 550 ttggttctggtttctcatacgctcatgat 578 Score = 50.1 bits (25), Expect = 0.031 Identities = 90/114 (78%) Strand = Plus / Plus Query: 459 tctttgcatgtcttaatatttctcaacaagtggtttatcgatcacccacgctaccnnnnn 518 |||||||| ||| ||| |||||| || |||||||| | |||||||||||||| | Sbjct: 612 tctttgcaagtcgtaacatttctgaagaagtggttcaatgatcacccacgctatctctca 671 Query: 519 nntcctttctttattggaggaagttcatatgctggaaagatgtctccaattatc 572 || ||||| | |||||||||| ||||| ||||||||| || |||||||||| Sbjct: 672 aatcatttctatgttggaggaagctcatacgctggaaaggtgattccaattatc 725
>ref|NM_001054313.1| Oryza sativa (japonica cultivar-group) Os02g0687900 (Os02g0687900) mRNA, complete cds Length = 1671 Score = 91.7 bits (46), Expect = 9e-15 Identities = 109/130 (83%) Strand = Plus / Plus Query: 82 cggcgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggaga 141 ||||| ||||||| ||||| || ||||| ||| |||| | || || ||| ||||||||| Sbjct: 164 cggcgacggtggtcacccacctgccgggattcgatggtcctctacccttctacctggaga 223 Query: 142 ccgggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtggagt 201 |||||||| | ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 224 ccgggtacgtgggcgtggaggaggagaccgggacggagctcttctactacttcgtggagt 283 Query: 202 cagagaggag 211 | ||| |||| Sbjct: 284 cggagcggag 293
>dbj|AK064814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E09, full insert sequence Length = 1673 Score = 91.7 bits (46), Expect = 9e-15 Identities = 109/130 (83%) Strand = Plus / Plus Query: 82 cggcgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggaga 141 ||||| ||||||| ||||| || ||||| ||| |||| | || || ||| ||||||||| Sbjct: 165 cggcgacggtggtcacccacctgccgggattcgatggtcctctacccttctacctggaga 224 Query: 142 ccgggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtggagt 201 |||||||| | ||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 225 ccgggtacgtgggcgtggaggaggagaccgggacggagctcttctactacttcgtggagt 284 Query: 202 cagagaggag 211 | ||| |||| Sbjct: 285 cggagcggag 294
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 71.9 bits (36), Expect = 8e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 29658250 cgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccg 29658309 Query: 145 ggta 148 |||| Sbjct: 29658310 ggta 29658313 Score = 71.9 bits (36), Expect = 8e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 285 ggtcctatgaaatttgtgctggcaccttataatggtagtttgccacagttggcctataat 344 ||||||||||| || |||||||| |||||||||||||||||||||| |||| ||||| Sbjct: 29683416 ggtcctatgaatttcgtgctggcgccttataatggtagtttgccacgattggttaataat 29683475 Query: 345 ccatattcatgg 356 | |||||||||| Sbjct: 29683476 caatattcatgg 29683487 Score = 63.9 bits (32), Expect = 2e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 156 gtggacgaggagacgggagcggagctcttctactacttcgtggagtcagagaggag 211 ||||||||||||||||| | |||||||||||||||||||| || || |||||||| Sbjct: 29659541 gtggacgaggagacgggcactgagctcttctactacttcgttgaatcggagaggag 29659596 Score = 52.0 bits (26), Expect = 0.008 Identities = 44/50 (88%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagaggaggccggacacggaccc 226 |||||||||||||||||||| || ||||||| || || ||||||||||| Sbjct: 29670887 gagctcttctactacttcgttgaatcagagacgaaccctgacacggaccc 29670936 Score = 50.1 bits (25), Expect = 0.031 Identities = 58/69 (84%) Strand = Plus / Plus Query: 288 cctatgaaatttgtgctggcaccttataatggtagtttgccacagttggcctataatcca 347 |||||||||| ||| ||| |||||||||||||||||||||| |||| ||||||| Sbjct: 29660528 cctatgaaatacgtgttggagccttataatggtagtttgccacgattggtttataatcag 29660587 Query: 348 tattcatgg 356 ||||||||| Sbjct: 29660588 tattcatgg 29660596 Score = 50.1 bits (25), Expect = 0.031 Identities = 40/45 (88%) Strand = Plus / Plus Query: 285 ggtcctatgaaatttgtgctggcaccttataatggtagtttgcca 329 |||||| |||| |||||| ||| | |||||||||||||||||||| Sbjct: 29671168 ggtcctttgaattttgtgttggaagcttataatggtagtttgcca 29671212 Score = 48.1 bits (24), Expect = 0.12 Identities = 54/64 (84%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | | |||| |||| ||||| | Sbjct: 29680166 cgtcggtgatcacccacctcccgggcttccacggccgcttgcggttctaccttgagactg 29680225 Query: 145 ggta 148 |||| Sbjct: 29680226 ggta 29680229
>gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 genomic sequence, complete sequence Length = 132782 Score = 71.9 bits (36), Expect = 8e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 89458 cgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccg 89517 Query: 145 ggta 148 |||| Sbjct: 89518 ggta 89521 Score = 71.9 bits (36), Expect = 8e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 285 ggtcctatgaaatttgtgctggcaccttataatggtagtttgccacagttggcctataat 344 ||||||||||| || |||||||| |||||||||||||||||||||| |||| ||||| Sbjct: 114624 ggtcctatgaatttcgtgctggcgccttataatggtagtttgccacgattggttaataat 114683 Query: 345 ccatattcatgg 356 | |||||||||| Sbjct: 114684 caatattcatgg 114695 Score = 63.9 bits (32), Expect = 2e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 156 gtggacgaggagacgggagcggagctcttctactacttcgtggagtcagagaggag 211 ||||||||||||||||| | |||||||||||||||||||| || || |||||||| Sbjct: 90749 gtggacgaggagacgggcactgagctcttctactacttcgttgaatcggagaggag 90804 Score = 52.0 bits (26), Expect = 0.008 Identities = 44/50 (88%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagaggaggccggacacggaccc 226 |||||||||||||||||||| || ||||||| || || ||||||||||| Sbjct: 102095 gagctcttctactacttcgttgaatcagagacgaaccctgacacggaccc 102144 Score = 50.1 bits (25), Expect = 0.031 Identities = 58/69 (84%) Strand = Plus / Plus Query: 288 cctatgaaatttgtgctggcaccttataatggtagtttgccacagttggcctataatcca 347 |||||||||| ||| ||| |||||||||||||||||||||| |||| ||||||| Sbjct: 91736 cctatgaaatacgtgttggagccttataatggtagtttgccacgattggtttataatcag 91795 Query: 348 tattcatgg 356 ||||||||| Sbjct: 91796 tattcatgg 91804 Score = 50.1 bits (25), Expect = 0.031 Identities = 40/45 (88%) Strand = Plus / Plus Query: 285 ggtcctatgaaatttgtgctggcaccttataatggtagtttgcca 329 |||||| |||| |||||| ||| | |||||||||||||||||||| Sbjct: 102376 ggtcctttgaattttgtgttggaagcttataatggtagtttgcca 102420 Score = 48.1 bits (24), Expect = 0.12 Identities = 54/64 (84%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | | |||| |||| ||||| | Sbjct: 111374 cgtcggtgatcacccacctcccgggcttccacggccgcttgcggttctaccttgagactg 111433 Query: 145 ggta 148 |||| Sbjct: 111434 ggta 111437
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Plus Query: 154 gcgtggacgaggagacgggagcggagctcttctactacttcgtggagtcagagaggag 211 ||||||| |||||||| || |||||||||||||||||||||||||||| ||| |||| Sbjct: 28231006 gcgtggaggaggagaccgggacggagctcttctactacttcgtggagtcggagcggag 28231063
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 67.9 bits (34), Expect = 1e-07 Identities = 52/58 (89%) Strand = Plus / Plus Query: 154 gcgtggacgaggagacgggagcggagctcttctactacttcgtggagtcagagaggag 211 ||||||| |||||||| || |||||||||||||||||||||||||||| ||| |||| Sbjct: 22763 gcgtggaggaggagaccgggacggagctcttctactacttcgtggagtcggagcggag 22820
>emb|CT829103.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA045J09, full insert sequence Length = 553 Score = 65.9 bits (33), Expect = 5e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 85 cgtcggtggtgacccatctcccgggcttccatggccgccttccgttccacctggagaccg 144 |||||||| | ||||| |||||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 115 cgtcggtgatcacccacctcccgggcttccacggccgcttgccgttccaccttgagaccg 174 Query: 145 g 145 | Sbjct: 175 g 175 Score = 63.9 bits (32), Expect = 2e-06 Identities = 50/56 (89%) Strand = Plus / Plus Query: 156 gtggacgaggagacgggagcggagctcttctactacttcgtggagtcagagaggag 211 ||||||||||||||||| | |||||||||||||||||||| || || |||||||| Sbjct: 257 gtggacgaggagacgggcactgagctcttctactacttcgttgaatcggagaggag 312
>dbj|AK241620.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065186H23, full insert sequence Length = 2457 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 138 gagaccgggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtg 197 |||||||||||| | | ||| |||||||||| || || ||||| ||||||||||||||| Sbjct: 219 gagaccgggtacgtgaccgtcgacgaggagaacggggcagagctgttctactacttcgtg 278 Query: 198 gagtc 202 ||||| Sbjct: 279 gagtc 283
>ref|NM_001074320.1| Oryza sativa (japonica cultivar-group) Os11g0430000 (Os11g0430000) mRNA, complete cds Length = 516 Score = 58.0 bits (29), Expect = 1e-04 Identities = 56/65 (86%) Strand = Plus / Plus Query: 138 gagaccgggtacatcagcgtggacgaggagacgggagcggagctcttctactacttcgtg 197 |||||||||||| | | ||| |||||||||| || || ||||| ||||||||||||||| Sbjct: 151 gagaccgggtacgtgaccgtcgacgaggagaacggggcagagctgttctactacttcgtg 210 Query: 198 gagtc 202 ||||| Sbjct: 211 gagtc 215
>ref|NM_001057697.1| Oryza sativa (japonica cultivar-group) Os03g0730500 (Os03g0730500) mRNA, complete cds Length = 2967 Score = 54.0 bits (27), Expect = 0.002 Identities = 45/51 (88%) Strand = Plus / Plus Query: 279 gaagttggtcctatgaaatttgtgctggcaccttataatggtagtttgcca 329 ||||| |||||| |||| |||||| ||| | |||||||||||||||||||| Sbjct: 373 gaagtaggtcctttgaattttgtgttggaagcttataatggtagtttgcca 423 Score = 52.0 bits (26), Expect = 0.008 Identities = 44/50 (88%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagaggaggccggacacggaccc 226 |||||||||||||||||||| || ||||||| || || ||||||||||| Sbjct: 265 gagctcttctactacttcgttgaatcagagacgaaccctgacacggaccc 314
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 102 ctcccgggcttccatggccgccttccgttccacctggagaccgggta 148 ||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 18691739 ctcccgggcttccatggccgcctgccattctacctcgagactgggta 18691785 Score = 48.1 bits (24), Expect = 0.12 Identities = 30/32 (93%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagag 208 |||||||||||||||||||| || |||||||| Sbjct: 18691931 gagctcttctactacttcgttgaatcagagag 18691962
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 102 ctcccgggcttccatggccgccttccgttccacctggagaccgggta 148 ||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 17490 ctcccgggcttccatggccgcctgccattctacctcgagactgggta 17536 Score = 48.1 bits (24), Expect = 0.12 Identities = 30/32 (93%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagag 208 |||||||||||||||||||| || |||||||| Sbjct: 17682 gagctcttctactacttcgttgaatcagagag 17713
>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04 Length = 153894 Score = 54.0 bits (27), Expect = 0.002 Identities = 42/47 (89%) Strand = Plus / Plus Query: 102 ctcccgggcttccatggccgccttccgttccacctggagaccgggta 148 ||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 143842 ctcccgggcttccatggccgcctgccattctacctcgagactgggta 143888 Score = 48.1 bits (24), Expect = 0.12 Identities = 30/32 (93%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagag 208 |||||||||||||||||||| || |||||||| Sbjct: 144034 gagctcttctactacttcgttgaatcagagag 144065
>dbj|AK066640.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073A13, full insert sequence Length = 2970 Score = 54.0 bits (27), Expect = 0.002 Identities = 45/51 (88%) Strand = Plus / Plus Query: 279 gaagttggtcctatgaaatttgtgctggcaccttataatggtagtttgcca 329 ||||| |||||| |||| |||||| ||| | |||||||||||||||||||| Sbjct: 374 gaagtaggtcctttgaattttgtgttggaagcttataatggtagtttgcca 424 Score = 52.0 bits (26), Expect = 0.008 Identities = 44/50 (88%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagaggaggccggacacggaccc 226 |||||||||||||||||||| || ||||||| || || ||||||||||| Sbjct: 266 gagctcttctactacttcgttgaatcagagacgaaccctgacacggaccc 315
>dbj|AK066477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070H07, full insert sequence Length = 1931 Score = 54.0 bits (27), Expect = 0.002 Identities = 45/51 (88%) Strand = Plus / Plus Query: 279 gaagttggtcctatgaaatttgtgctggcaccttataatggtagtttgcca 329 ||||| |||||| |||| |||||| ||| | |||||||||||||||||||| Sbjct: 457 gaagtaggtcctttgaattttgtgttggaagcttataatggtagtttgcca 507 Score = 52.0 bits (26), Expect = 0.008 Identities = 44/50 (88%) Strand = Plus / Plus Query: 177 gagctcttctactacttcgtggagtcagagaggaggccggacacggaccc 226 |||||||||||||||||||| || ||||||| || || ||||||||||| Sbjct: 349 gagctcttctactacttcgttgaatcagagacgaaccctgacacggaccc 398
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 50.1 bits (25), Expect = 0.031 Identities = 28/29 (96%) Strand = Plus / Minus Query: 174 gcggagctcttctactacttcgtggagtc 202 ||||||||||||||||||||||| ||||| Sbjct: 24148113 gcggagctcttctactacttcgtcgagtc 24148085
>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132733 Score = 50.1 bits (25), Expect = 0.031 Identities = 28/29 (96%) Strand = Plus / Minus Query: 174 gcggagctcttctactacttcgtggagtc 202 ||||||||||||||||||||||| ||||| Sbjct: 32804 gcggagctcttctactacttcgtcgagtc 32776
>gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035N09, complete sequence Length = 129468 Score = 48.1 bits (24), Expect = 0.12 Identities = 39/44 (88%) Strand = Plus / Minus Query: 159 gacgaggagacgggagcggagctcttctactacttcgtggagtc 202 |||||||||| || || ||||| |||||||||||||||||||| Sbjct: 24960 gacgaggagaacggggcagagctgttctactacttcgtggagtc 24917
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 48.1 bits (24), Expect = 0.12 Identities = 39/44 (88%) Strand = Plus / Minus Query: 159 gacgaggagacgggagcggagctcttctactacttcgtggagtc 202 |||||||||| || || ||||| |||||||||||||||||||| Sbjct: 13206149 gacgaggagaacggggcagagctgttctactacttcgtggagtc 13206106
>gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, complete sequence Length = 148006 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Minus Query: 449 tttctccttttctttgcatgtcttaata 476 |||||||||||||||| ||||||||||| Sbjct: 19887 tttctccttttctttgtatgtcttaata 19860
>gb|AC151739.15| Medicago truncatula clone mth2-49e16, complete sequence Length = 91126 Score = 46.1 bits (23), Expect = 0.48 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1074 ttttctttaaataaaaaacaaaatttt 1100 |||||||||||||||||||| |||||| Sbjct: 40973 ttttctttaaataaaaaacataatttt 40999
>gb|AC025858.14| Homo sapiens chromosome 17, clone RP11-700K10, complete sequence Length = 65609 Score = 46.1 bits (23), Expect = 0.48 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1074 ttttctttaaataaaaaacaaaatttt 1100 |||||||||||||||||| |||||||| Sbjct: 3171 ttttctttaaataaaaaaaaaaatttt 3145
>ref|NM_001058700.1| Oryza sativa (japonica cultivar-group) Os04g0176400 (Os04g0176400) mRNA, complete cds Length = 1404 Score = 44.1 bits (22), Expect = 1.9 Identities = 43/50 (86%) Strand = Plus / Plus Query: 181 tcttctactacttcgtggagtcagagaggaggccggacacggaccccgtc 230 |||||||||||||| | ||||| |||||||| ||||| |||||||||| Sbjct: 194 tcttctactacttcatcgagtcggagaggagcccggaggaggaccccgtc 243
>gb|AC184826.9| Canis Familiaris chromosome 25, clone XX-19M5, complete sequence Length = 214338 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1087 aaaaacaaaattttgaactgtt 1108 |||||||||||||||||||||| Sbjct: 74133 aaaaacaaaattttgaactgtt 74112
>gb|AC147350.2| Xenopus tropicalis clone CH216-142P22, complete sequence Length = 59717 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1074 ttttctttaaataaaaaacaaa 1095 |||||||||||||||||||||| Sbjct: 22893 ttttctttaaataaaaaacaaa 22914
>gb|AC024214.1| Caenorhabditis elegans cosmid Y77E11A, complete sequence Length = 121081 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 966 gatatttcaaaaaattatagga 987 |||||||||||||||||||||| Sbjct: 59709 gatatttcaaaaaattatagga 59730
>gb|AC147677.4| Canis Familiaris, clone XX-25A1, complete sequence Length = 154021 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 ||||||||||||||||||||| |||| Sbjct: 78938 tcattttctttaaataaaaaaaaaaa 78913
>gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosome 3, complete sequence Length = 136942 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1064 ttcatattcattttctttaaat 1085 |||||||||||||||||||||| Sbjct: 57948 ttcatattcattttctttaaat 57927
>gb|AC117190.3| Mus musculus BAC clone RP23-55A21 from 2, complete sequence Length = 189549 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 ||||||||||| |||||||||||||| Sbjct: 34965 tcattttcttttaataaaaaacaaaa 34940
>emb|CR759910.13| Zebrafish DNA sequence from clone DKEYP-79C4 in linkage group 19, complete sequence Length = 217814 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1074 ttttctttaaataaaaaacaaaattt 1099 |||| ||||||||||||||||||||| Sbjct: 156158 ttttttttaaataaaaaacaaaattt 156133
>gb|AC154492.2| Mus musculus BAC clone RP24-107B10 from chromosome 17, complete sequence Length = 172605 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1074 ttttctttaaataaaaaacaaa 1095 |||||||||||||||||||||| Sbjct: 7331 ttttctttaaataaaaaacaaa 7352
>ref|NR_001458.1| Homo sapiens BIC transcript (BIC) on chromosome 21 Length = 12969 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 |||| ||||||||||||||||||||| Sbjct: 11441 tcatcttctttaaataaaaaacaaaa 11416
>emb|BX927107.9| Zebrafish DNA sequence from clone CH211-281H20 in linkage group 7, complete sequence Length = 135772 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1075 tttctttaaataaaaaacaaaa 1096 |||||||||||||||||||||| Sbjct: 44497 tttctttaaataaaaaacaaaa 44518
>gb|AC108162.4| Homo sapiens BAC clone RP11-686G17 from 4, complete sequence Length = 185624 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1075 tttctttaaataaaaaacaaaatttt 1100 ||||||||| |||||||||||||||| Sbjct: 27980 tttctttaattaaaaaacaaaatttt 28005
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.9 Identities = 43/50 (86%) Strand = Plus / Minus Query: 181 tcttctactacttcgtggagtcagagaggaggccggacacggaccccgtc 230 |||||||||||||| | ||||| |||||||| ||||| |||||||||| Sbjct: 5179805 tcttctactacttcatcgagtcggagaggagcccggaggaggaccccgtc 5179756
>gb|AC083829.5| Homo sapiens BAC clone RP11-466G12 from 4, complete sequence Length = 189402 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 547 atgctggaaagatgtctccaattatc 572 ||||||||||||||| |||||||||| Sbjct: 77220 atgctggaaagatgtatccaattatc 77195
>emb|AL606993.2|OSJN00121 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0051N19, complete sequence Length = 49800 Score = 44.1 bits (22), Expect = 1.9 Identities = 43/50 (86%) Strand = Plus / Minus Query: 181 tcttctactacttcgtggagtcagagaggaggccggacacggaccccgtc 230 |||||||||||||| | ||||| |||||||| ||||| |||||||||| Sbjct: 14210 tcttctactacttcatcgagtcggagaggagcccggaggaggaccccgtc 14161
>dbj|BS000105.1| Pan troglodytes chromosome 22 clone:RP43-117B17, map 22, complete sequences Length = 164236 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 |||| ||||||||||||||||||||| Sbjct: 50410 tcatcttctttaaataaaaaacaaaa 50385
>emb|BX323808.7| Zebrafish DNA sequence from clone DKEY-117N4, complete sequence Length = 152686 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1075 tttctttaaataaaaaacaaaa 1096 |||||||||||||||||||||| Sbjct: 44514 tttctttaaataaaaaacaaaa 44535
>gb|AC024873.1|AC024873 Caenorhabditis elegans clone Y77E11A, complete sequence Length = 121081 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 966 gatatttcaaaaaattatagga 987 |||||||||||||||||||||| Sbjct: 59709 gatatttcaaaaaattatagga 59730
>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105 Length = 340000 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 |||| ||||||||||||||||||||| Sbjct: 319677 tcatcttctttaaataaaaaacaaaa 319652
>gb|AY112148.1| Zea mays CL62029_1 mRNA sequence Length = 659 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 gctcttctactacttcgtggag 200 |||||||||||||||||||||| Sbjct: 236 gctcttctactacttcgtggag 257
>gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome 3, complete sequence Length = 215382 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1064 ttcatattcattttctttaaat 1085 |||||||||||||||||||||| Sbjct: 203130 ttcatattcattttctttaaat 203151
>ref|XM_736658.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000095.05.0) partial mRNA Length = 1029 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1082 aaataaaaaacaaaattttgaa 1103 |||||||||||||||||||||| Sbjct: 114 aaataaaaaacaaaattttgaa 135
>emb|AL929043.7| Mouse DNA sequence from clone RP23-58H6 on chromosome 2, complete sequence Length = 164834 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 ||||||||||| |||||||||||||| Sbjct: 129204 tcattttcttttaataaaaaacaaaa 129179
>dbj|AP000223.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone:S11, complete sequence Length = 84031 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 |||| ||||||||||||||||||||| Sbjct: 9674 tcatcttctttaaataaaaaacaaaa 9649
>dbj|AP000137.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone B2291C14-R44F3, segment 2/10, complete sequence Length = 100000 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 |||| ||||||||||||||||||||| Sbjct: 79973 tcatcttctttaaataaaaaacaaaa 79948
>dbj|AP000085.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region, segment 2/7 Length = 100000 Score = 44.1 bits (22), Expect = 1.9 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaacaaaa 1096 |||| ||||||||||||||||||||| Sbjct: 79973 tcatcttctttaaataaaaaacaaaa 79948
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 cgctctcgcgctcggcgtcggtggt 94 |||||||||| |||||||||||||| Sbjct: 2576954 cgctctcgcggtcggcgtcggtggt 2576930
>ref|XM_001107800.1| PREDICTED: Macaca mulatta similar to zinc finger protein 31, transcript variant 1 (LOC710291), mRNA Length = 3999 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 810 gagacgtctcctgaacaacct 830 ||||||||||||||||||||| Sbjct: 2485 gagacgtctcctgaacaacct 2505
>ref|XM_001107866.1| PREDICTED: Macaca mulatta similar to zinc finger protein 31, transcript variant 2 (LOC710291), mRNA Length = 4202 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 810 gagacgtctcctgaacaacct 830 ||||||||||||||||||||| Sbjct: 2691 gagacgtctcctgaacaacct 2711
>emb|CR925808.19| Zebrafish DNA sequence from clone DKEY-200L5 in linkage group 10, complete sequence Length = 170902 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1073 attttctttaaataaaaaaca 1093 ||||||||||||||||||||| Sbjct: 77321 attttctttaaataaaaaaca 77301
>gb|DQ396124.1| Uncultured organism clone ctg_NISA148 16S ribosomal RNA gene, partial sequence Length = 1490 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 575 agaccacatttcacaagaaat 595 ||||||||||||||||||||| Sbjct: 142 agaccacatttcacaagaaat 162
>gb|AC161009.5| Pan troglodytes BAC clone CH251-560O18 from chromosome unknown, complete sequence Length = 168542 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1337 tcagtccattccattccatct 1357 ||||||||||||||||||||| Sbjct: 91853 tcagtccattccattccatct 91873
>ref|NM_127866.2| Arabidopsis thaliana SCPL9; catalytic/ serine carboxypeptidase (SCPL9) mRNA, complete cds Length = 1503 Score = 42.1 bits (21), Expect = 7.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 346 catattcatggtccaagacagcaaacatcatcttattggat 386 ||||||||||| | |||||||||||||| || || |||||| Sbjct: 332 catattcatggacaaagacagcaaacataatattcttggat 372
>ref|NM_201788.1| Arabidopsis thaliana SCPL9; catalytic/ serine carboxypeptidase (SCPL9) mRNA, complete cds Length = 1503 Score = 42.1 bits (21), Expect = 7.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 346 catattcatggtccaagacagcaaacatcatcttattggat 386 ||||||||||| | |||||||||||||| || || |||||| Sbjct: 332 catattcatggacaaagacagcaaacataatattcttggat 372
>gb|AC121239.34| Medicago truncatula clone mth1-8p19, complete sequence Length = 100985 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1075 tttctttaaataaaaaacaaa 1095 ||||||||||||||||||||| Sbjct: 6020 tttctttaaataaaaaacaaa 6040
>gb|AC165080.4| Mus musculus BAC clone RP24-93F20 from chromosome 9, complete sequence Length = 194427 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1072 cattttctttaaataaaaaacaaaa 1096 |||||||||||||||||||| |||| Sbjct: 152494 cattttctttaaataaaaaataaaa 152518
>gb|AC148227.14| Medicago truncatula clone mth2-8f11, complete sequence Length = 116139 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaa 1091 ||||||||||||||||||||| Sbjct: 79178 tcattttctttaaataaaaaa 79158
>gb|AC140799.6| Mus musculus chromosome 15, clone RP24-147N23, complete sequence Length = 162329 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 897 gatgctcttggggtgaagaag 917 ||||||||||||||||||||| Sbjct: 48730 gatgctcttggggtgaagaag 48750
>gb|AC129082.6| Mus musculus BAC clone RP24-324M11 from chromosome 8, complete sequence Length = 141671 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1169 acaaataattcattatttgat 1189 ||||||||||||||||||||| Sbjct: 19070 acaaataattcattatttgat 19090
>gb|AC121896.3| Mus musculus BAC clone RP24-159J17 from chromosome 8, complete sequence Length = 146143 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1169 acaaataattcattatttgat 1189 ||||||||||||||||||||| Sbjct: 59365 acaaataattcattatttgat 59345
>gb|AC117183.3| Mus musculus BAC clone RP23-37B19 from 19, complete sequence Length = 190192 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1073 attttctttaaataaaaaaca 1093 ||||||||||||||||||||| Sbjct: 56540 attttctttaaataaaaaaca 56560
>gb|AC122884.2| Mus musculus BAC clone RP23-88O13 from 5, complete sequence Length = 160295 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 attggattcaccagtgggtac 400 ||||||||||||||||||||| Sbjct: 88830 attggattcaccagtgggtac 88810
>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence Length = 171170 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1857 gcttgtaaaataggcatgtac 1877 ||||||||||||||||||||| Sbjct: 40975 gcttgtaaaataggcatgtac 40955
>gb|DQ009461.1| Uncultured marine bacterium clone SPOTSMAY03_500m10 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 2059 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 575 agaccacatttcacaagaaat 595 ||||||||||||||||||||| Sbjct: 151 agaccacatttcacaagaaat 171
>gb|AC024218.17| Homo sapiens 3 BAC RP11-668N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141860 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1073 attttctttaaataaaaaacaaaat 1097 |||||||||||| |||||||||||| Sbjct: 20442 attttctttaaaaaaaaaacaaaat 20466
>gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-45n16, complete sequence Length = 107886 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaa 1091 ||||||||||||||||||||| Sbjct: 57242 tcattttctttaaataaaaaa 57222
>dbj|AK158237.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930044L24 product:unclassifiable, full insert sequence Length = 2727 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1072 cattttctttaaataaaaaacaaaa 1096 |||||||||||||||||||| |||| Sbjct: 2698 cattttctttaaataaaaaataaaa 2722
>dbj|AK149318.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930023E07 product:unclassifiable, full insert sequence Length = 3305 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1072 cattttctttaaataaaaaacaaaa 1096 |||||||||||||||||||| |||| Sbjct: 2729 cattttctttaaataaaaaataaaa 2753
>emb|CT025534.4| M.truncatula DNA sequence from clone MTH2-1H4 on chromosome 3, complete sequence Length = 100991 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1075 tttctttaaataaaaaacaaa 1095 ||||||||||||||||||||| Sbjct: 6025 tttctttaaataaaaaacaaa 6045
>emb|Z68114.1|CEF17A2 Caenorhabditis elegans Cosmid F17A2, complete sequence Length = 34401 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 768 ataccacatagatttctgtcagaag 792 |||| |||||||||||||||||||| Sbjct: 20254 atacaacatagatttctgtcagaag 20230
>emb|AL772182.3| Human DNA sequence from clone RP11-36K22 on chromosome X, complete sequence Length = 161047 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 attttctttgaagttggtcct 290 ||||||||||||||||||||| Sbjct: 51304 attttctttgaagttggtcct 51324
>emb|AL358074.22| Human DNA sequence from clone RP11-423C15 on chromosome 9 Contains the 5' end of the MAPKAP1 gene for mitogen-activated protein kinase associated protein 1, a novel gene, the 5' end of the PBX3 gene for pre-B-cell leukemia transcription factor 3 and three CpG islands, complete sequence Length = 109081 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1185 ttgatggctgccaaccaaact 1205 ||||||||||||||||||||| Sbjct: 70532 ttgatggctgccaaccaaact 70552
>emb|CR376771.10| Zebrafish DNA sequence from clone DKEY-160I7 in linkage group 1, complete sequence Length = 178445 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 780 tttctgtcagaagaatacagt 800 ||||||||||||||||||||| Sbjct: 54245 tttctgtcagaagaatacagt 54265
>gb|AC160088.2| Mus musculus BAC clone RP23-134J11 from chromosome 19, complete sequence Length = 221101 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1073 attttctttaaataaaaaaca 1093 ||||||||||||||||||||| Sbjct: 174168 attttctttaaataaaaaaca 174188
>emb|CR352283.6| Zebrafish DNA sequence from clone CH211-105M14 in linkage group 12, complete sequence Length = 161750 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1073 attttctttaaataaaaaaca 1093 ||||||||||||||||||||| Sbjct: 14296 attttctttaaataaaaaaca 14276
>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence Length = 164472 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1909 agaggcattcatgactgtttc 1929 ||||||||||||||||||||| Sbjct: 101123 agaggcattcatgactgtttc 101143
>emb|BX511076.8| Zebrafish DNA sequence from clone CH211-276P17 in linkage group 17, complete sequence Length = 61227 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1494 cagaagtataaattcacggct 1514 ||||||||||||||||||||| Sbjct: 48053 cagaagtataaattcacggct 48073
>emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 in linkage group 25, complete sequence Length = 168993 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1064 ttcatattcattttctttaaa 1084 ||||||||||||||||||||| Sbjct: 34039 ttcatattcattttctttaaa 34059
>emb|AL589722.17| Mouse DNA sequence from clone RP23-169M24 on chromosome 13 Contains the gene for a novel protein similar to ribosomal protein S8 (Rps8) and a CpG island, complete sequence Length = 200125 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1080 ttaaataaaaaacaaaatttt 1100 ||||||||||||||||||||| Sbjct: 54114 ttaaataaaaaacaaaatttt 54094
>emb|BX511028.13| Zebrafish DNA sequence from clone DKEY-161N17 in linkage group 20, complete sequence Length = 225010 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1085 taaaaaacaaaattttgaact 1105 ||||||||||||||||||||| Sbjct: 136691 taaaaaacaaaattttgaact 136711
>emb|AL772332.6| Zebrafish DNA sequence from clone CH211-150A22 in linkage group 1 Contains part of a gene similar to human PET112 for PET112-like protein from yeast, two novel genes and seven CpG islands, complete sequence Length = 175762 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 780 tttctgtcagaagaatacagt 800 ||||||||||||||||||||| Sbjct: 94084 tttctgtcagaagaatacagt 94104
>emb|AL512589.4| Mouse DNA sequence from clone RP23-431C3 on chromosome 2, complete sequence Length = 170352 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 catgggtaaagcttccttgtt 37 ||||||||||||||||||||| Sbjct: 159646 catgggtaaagcttccttgtt 159626
>gb|AC011997.8| Homo sapiens BAC clone RP11-294E24 from 2, complete sequence Length = 186315 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1337 tcagtccattccattccatct 1357 ||||||||||||||||||||| Sbjct: 177018 tcagtccattccattccatct 176998
>emb|AL954812.14| Zebrafish DNA sequence from clone DKEY-50G15, complete sequence Length = 192304 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1494 cagaagtataaattcacggct 1514 ||||||||||||||||||||| Sbjct: 170232 cagaagtataaattcacggct 170252
>emb|BX005309.14| Zebrafish DNA sequence from clone CH211-265M20 in linkage group 10, complete sequence Length = 179240 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1071 tcattttctttaaataaaaaacaaa 1095 |||||||||||||| |||||||||| Sbjct: 37038 tcattttctttaaaaaaaaaacaaa 37062
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1061 agcttcatattcattttctttaaat 1085 |||||||||||||||||| |||||| Sbjct: 1013742 agcttcatattcattttcattaaat 1013766
>dbj|AP004531.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT13M14, TM0059, complete sequence Length = 94884 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1096 attttgaactgttagtttatt 1116 ||||||||||||||||||||| Sbjct: 53840 attttgaactgttagtttatt 53820
>dbj|AK112124.1| Ciona intestinalis cDNA, clone:ciad078g21, full insert sequence Length = 1793 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1888 ggttgggtggttggatgtgaa 1908 ||||||||||||||||||||| Sbjct: 1437 ggttgggtggttggatgtgaa 1457
>gb|AC154366.2| Mus musculus BAC clone RP24-567I24 from 17, complete sequence Length = 147597 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1070 ttcattttctttaaataaaaa 1090 ||||||||||||||||||||| Sbjct: 46770 ttcattttctttaaataaaaa 46750
>gb|AC155891.2| Medicago truncatula chromosome 2 BAC clone mth2-4g10, complete sequence Length = 148303 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1073 attttctttaaataaaaaacaaaat 1097 |||||||||||| |||||||||||| Sbjct: 67509 attttctttaaaaaaaaaacaaaat 67533
>gb|AY106655.1| Zea mays PCO098527 mRNA sequence Length = 1533 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 ggagctcttctactacttcgt 196 ||||||||||||||||||||| Sbjct: 111 ggagctcttctactacttcgt 131
>gb|DQ317992.1| Changiostyrax dolichocarpa psbA-trnH intergenic spacer, partial sequence Length = 405 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1079 tttaaataaaaaacaaaattttgaa 1103 ||||||||||||| ||||||||||| Sbjct: 311 tttaaataaaaaagaaaattttgaa 335
>ref|XM_672680.1| Plasmodium berghei strain ANKA hypothetical protein (PB001218.00.0) partial mRNA Length = 4845 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1079 tttaaataaaaaacaaaattttgaa 1103 ||||||||||||||||| ||||||| Sbjct: 3276 tttaaataaaaaacaaatttttgaa 3300
>emb|CT573419.4| Pig DNA sequence from clone CH242-441P16 on chromosome 17, complete sequence Length = 45574 Score = 42.1 bits (21), Expect = 7.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1068 tattcattttctttaaataaaaaacaaaa 1096 |||||||||| ||||| |||||||||||| Sbjct: 34895 tattcattttttttaattaaaaaacaaaa 34867
>ref|XM_721158.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00679) partial mRNA Length = 5100 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1079 tttaaataaaaaacaaaattttgaa 1103 ||||||||||||||||| ||||||| Sbjct: 3114 tttaaataaaaaacaaatttttgaa 3138
>emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, complete sequence Length = 269096 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1073 attttctttaaataaaaaacaaaat 1097 |||||||||||| |||||||||||| Sbjct: 47544 attttctttaaaaaaaaaacaaaat 47520
>emb|AL844514.12| Zebrafish DNA sequence from clone DKEY-7E20 in linkage group 1, complete sequence Length = 228327 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 780 tttctgtcagaagaatacagt 800 ||||||||||||||||||||| Sbjct: 95751 tttctgtcagaagaatacagt 95731
>emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, complete sequence Length = 209875 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1064 ttcatattcattttctttaaa 1084 ||||||||||||||||||||| Sbjct: 88618 ttcatattcattttctttaaa 88598
>emb|AL928886.7| Mouse DNA sequence from clone RP23-267D10 on chromosome X, complete sequence Length = 118425 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1337 tcagtccattccattccatct 1357 ||||||||||||||||||||| Sbjct: 81064 tcagtccattccattccatct 81044
>emb|AL670292.9| Mouse DNA sequence from clone RP23-231H22 on chromosome X, complete sequence Length = 217063 Score = 42.1 bits (21), Expect = 7.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1067 atattcattttctttaaataaaaaa 1091 |||||||||||||||||| |||||| Sbjct: 63099 atattcattttctttaaaaaaaaaa 63123
>emb|AL606984.20| Mouse DNA sequence from clone RP23-81D5 on chromosome 4, complete sequence Length = 104368 Score = 42.1 bits (21), Expect = 7.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1071 tcattttctttaaataaaaaa 1091 ||||||||||||||||||||| Sbjct: 66145 tcattttctttaaataaaaaa 66125 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 357,584,679 Number of extensions: 20040325 Number of successful extensions: 474056 Number of sequences better than 10.0: 107 Number of HSP's gapped: 474053 Number of HSP's successfully gapped: 130 Length of query: 1949 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1926 Effective length of database: 18,503,978,556 Effective search space: 35638662698856 Effective search space used: 35638662698856 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)