ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf103o09 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os03g17520:12003.t05669:unspliced-genomic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase,| putative, expressed Length = 4419 Score = 109 bits (232), Expect(6) = 6e-49 Identities = 45/55 (81%), Positives = 45/55 (81%) Frame = -2 / -1 Query: 1611 CSCFFYYTMC*HYFRSIRHIFLMYTTRDHMASPADA*SNATPGGTRAPCTGRLGS 1447 CSC FYYTMC YFRSIRHIFLMYTTRDHMASPAD *SNA P TRA C GRL S Sbjct: 3957 CSCSFYYTMCYGYFRSIRHIFLMYTTRDHMASPADT*SNAMPEVTRASCAGRLQS 3793 Score = 60.2 bits (125), Expect(6) = 6e-49 Identities = 26/27 (96%), Positives = 26/27 (96%) Frame = -2 / -3 Query: 1449 SLLARSIVNAVICVAVFHFPKLLTATA 1369 SLLAR IVNAVICVAVFHFPKLLTATA Sbjct: 3694 SLLARRIVNAVICVAVFHFPKLLTATA 3614 Score = 42.8 bits (87), Expect(6) = 6e-49 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -1 / -3 Query: 1372 SLKNLGILRSSPLSNS*HCDLQK 1304 +LKN GILR SP S+S*HCDL K Sbjct: 3538 NLKNFGILRRSPFSHS*HCDLHK 3470 Score = 29.9 bits (59), Expect(6) = 6e-49 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -1 / -1 Query: 1876 FAAHYTRCPTLE 1841 FA HYT+CPTLE Sbjct: 4227 FADHYTQCPTLE 4192 Score = 23.1 bits (44), Expect(6) = 6e-49 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = -3 / -1 Query: 1799 THYELYILLLKRSSHAQQTLVANPPS 1722 T+Y L L R S L NPP+ Sbjct: 4143 TYYLLLCFLFLRRSCRHSNLATNPPN 4066 Score = 22.1 bits (42), Expect(6) = 6e-49 Identities = 7/12 (58%), Positives = 10/12 (83%) Frame = -2 / -2 Query: 1980 NMIWVKLQWQEL 1945 ++IWV LQW +L Sbjct: 4340 HIIWVNLQW*KL 4305 Score = 97.7 bits (207), Expect(7) = 4e-41 Identities = 47/72 (65%), Positives = 54/72 (75%) Frame = +2 / +2 Query: 1454 SLPVQGALVPPGVALLYASAGLAIWSLVVYIRNIWRILLK*C*HIV**KKQEQRRRYSIQ 1633 SLP Q ALV G+ALLY SAGLAIWSLVVY+R IWRILLK* *HIV**K+QEQ + + Sbjct: 3800 SLPAQDALVTSGIALLYVSAGLAIWSLVVYMRKIWRILLK*P*HIV**KEQEQASKVILH 3979 Query: 1634 DDAIFVEDC*VD 1669 +I +C VD Sbjct: 3980 FKSIQFLNCGVD 4015 Score = 55.6 bits (115), Expect(7) = 4e-41 Identities = 21/29 (72%), Positives = 23/29 (79%) Frame = +1 / +2 Query: 1369 GCGS*QFREVEDSDTDDGIDYAPCQQRPK 1455 GCGS*QF EVED + DD IDY PC+QR K Sbjct: 3614 GCGS*QFGEVEDRNADDSIDYPPCEQRQK 3700 Score = 49.6 bits (102), Expect(7) = 4e-41 Identities = 19/24 (79%), Positives = 21/24 (87%) Frame = +3 / +3 Query: 1299 ICFCRSQCQLLESGLLLRIPKFLR 1370 +C CRSQCQL E+GL LRIPKFLR Sbjct: 3465 LCLCRSQCQL*ENGLRLRIPKFLR 3536 Score = 26.3 bits (51), Expect(7) = 4e-41 Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = +2 / +1 Query: 1886 RCRRL*PYTST 1918 +CRRL*PYT+T Sbjct: 4234 KCRRL*PYTNT 4266 Score = 25.4 bits (49), Expect(7) = 4e-41 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +2 / +1 Query: 1943 WSSCHCNFTHIILPGSTKLFFQ 2008 +S HC FTH+I T F Q Sbjct: 4303 YSFYHCKFTHMICQKRTLFFGQ 4368 Score = 24.4 bits (47), Expect(7) = 4e-41 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = +1 / +2 Query: 988 EALCLHHMACLNQ 1026 E C HH+ACL Q Sbjct: 3179 EVECHHHVACLKQ 3217 Score = 24.4 bits (47), Expect(7) = 4e-41 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = +1 / +3 Query: 1843 RVLDTVCNELQ 1875 RVLDT CN+LQ Sbjct: 4194 RVLDTGCNDLQ 4226 Score = 93.2 bits (197), Expect(3) = 3e-30 Identities = 38/53 (71%), Positives = 43/53 (81%) Frame = +1 / +1 Query: 1453 KSTCTRCSSSPWCCVALCICWTCHMVPSGVHQKYMADTSKIVLAHSVIEETGA 1611 +S+CTRCS +ALCI WTCHMVPSGVH+K MADTSKI +AHSVIE TGA Sbjct: 3799 QSSCTRCSGYFRHRIALCISWTCHMVPSGVHEKDMADTSKIAVAHSVIEGTGA 3957 Score = 46.4 bits (95), Expect(3) = 3e-30 Identities = 20/27 (74%), Positives = 23/27 (85%) Frame = +2 / +2 Query: 1301 LFLQITMSAVREWAASQNTQVLEAVAV 1381 +F+ ITMSAVREWAASQNT+VLE V Sbjct: 3467 VFM*ITMSAVREWAASQNTKVLEVPPV 3547 Score = 31.8 bits (63), Expect(3) = 3e-30 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +2 / +3 Query: 1367 EAVAVNNLGKWKXXXXXXXXXXXXXSRD 1450 +AVAVNNLGKWK SRD Sbjct: 3612 QAVAVNNLGKWKTATQMTALTILLASRD 3695 Score = 80.8 bits (170), Expect(3) = 4e-29 Identities = 36/52 (69%), Positives = 40/52 (76%) Frame = -3 / -2 Query: 1610 APVSSITLCANTILEVSAIYF*CTPLGTIWQVQQMHRATQHQGELEHLVQVD 1455 APV SITLCA ILEVSAI F CTPLGTIWQVQ +H+A + + EHLVQ D Sbjct: 3956 APVPSITLCATAILEVSAISFSCTPLGTIWQVQLIHKAMRCRK*PEHLVQED 3801 Score = 46.4 bits (95), Expect(3) = 4e-29 Identities = 21/29 (72%), Positives = 22/29 (75%) Frame = -1 / -2 Query: 1453 WVSAGKEHSQCRHLCRCLPLP*IVNCHSL 1367 +VSA KE SQC HL LPLP IVNCHSL Sbjct: 3698 FVSARKEDSQCCHLRCGLPLPQIVNCHSL 3612 Score = 40.5 bits (82), Expect(3) = 4e-29 Identities = 20/28 (71%), Positives = 21/28 (75%) Frame = -2 / -1 Query: 1386 LLTATASRTWVF*EAAHSLTADIVICRN 1303 L T SRT VF*+AAHSLTADIVI N Sbjct: 3552 LSTGGTSRTLVF*DAAHSLTADIVIYIN 3469 Score = 86.8 bits (183), Expect(3) = 3e-21 Identities = 37/53 (69%), Positives = 41/53 (77%) Frame = +3 / +3 Query: 1455 VYLYKVL*FPLVLRCSMHLLDLPYGP*WCTSEIYGGYF*NSVST*CNRRNRSK 1613 V+L+K+L C M+ LDLPYGP*WCT E YGGYF*NS ST*CNRRNRSK Sbjct: 3801 VFLHKMLWLLPASHCFMYQLDLPYGP*WCT*ERYGGYF*NSRST*CNRRNRSK 3959 Score = 41.8 bits (85), Expect(3) = 3e-21 Identities = 17/23 (73%), Positives = 18/23 (78%) Frame = +1 / +1 Query: 1303 VSADHNVSC*RVGCFSEYPSS*G 1371 V DHNVSC R+GC SEY SS*G Sbjct: 3469 VYVDHNVSCERMGCVSEYQSS*G 3537 Score = 24.0 bits (46), Expect(3) = 3e-21 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 / +3 Query: 1948 FLPL*FYPYHIAREHKII 2001 FLPL* YPY ++ + I+ Sbjct: 4308 FLPL*VYPYDMSEANIIL 4361 Score = 57.0 bits (118), Expect(3) = 4e-11 Identities = 26/40 (65%), Positives = 29/40 (72%) Frame = -1 / -3 Query: 1573 F*KYPPYISDVHH*GPYGKSSRCIEQRNTRGN*STLYR*T 1454 F*KYPPY+S VHH*GPYGKSS I+Q + N S L R T Sbjct: 3919 F*KYPPYLSHVHH*GPYGKSS*YIKQCDAGSNQSILCRKT 3800 Score = 35.4 bits (71), Expect(3) = 4e-11 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = -3 / -2 Query: 1373 QPQELGYSEKQPTL*QLTL*SAET 1302 +PQEL YSE QP L QLTL*S T Sbjct: 3539 EPQELWYSETQPILSQLTL*ST*T 3468 Score = 25.4 bits (49), Expect(3) = 4e-11 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = -3 / -3 Query: 1886 VSSLCSSLHTVSNTRS 1839 + C SLH VSNTR+ Sbjct: 4237 IFQFCRSLHPVSNTRA 4190 Score = 32.7 bits (65), Expect = 9.7 Identities = 21/51 (41%), Positives = 26/51 (50%) Frame = +3 / +1 Query: 1368 RLWQLTI*GSGXXXXXXXXXLCSLPAETQVYLYKVL*FPLVLRCSMHLLDL 1520 RLWQLTI GSG L SL AET+ L L L LR + ++ + Sbjct: 3613 RLWQLTIWGSGRPQRR*QH*LSSLRAETKGILVWYLHGVLTLRSILFIISV 3765
>LOC_Os08g22030:12008.t01991:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5245 Score = 30.9 bits (61), Expect(3) = 0.055 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = +1 / -3 Query: 1468 RCSSSPWCCVALCICWTC 1521 RC S C+ CICW C Sbjct: 1208 RCCCSACYCILWCICWCC 1155 Score = 29.0 bits (57), Expect(3) = 0.055 Identities = 8/10 (80%), Positives = 9/10 (90%) Frame = +3 / -1 Query: 702 LPRCSGCHWQ 731 LP CSGCHW+ Sbjct: 1906 LPGCSGCHWR 1877 Score = 25.8 bits (50), Expect(3) = 0.055 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +2 / -1 Query: 1811 DLLSSEGSHSFECWTPC 1861 +L SS+ SH WTPC Sbjct: 484 EL*SSQASHHSRPWTPC 434
>LOC_Os08g22100:12008.t01994:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 1296 Score = 33.6 bits (67), Expect(2) = 0.39 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +1 / -2 Query: 1471 CSSSPWCCVALCICWTC 1521 C S CC+ CICW C Sbjct: 1190 CCCSACCCILWCICWCC 1140 Score = 25.8 bits (50), Expect(2) = 0.39 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +2 / -3 Query: 1811 DLLSSEGSHSFECWTPC 1861 +L SS+ SH WTPC Sbjct: 448 EL*SSQASHHSRPWTPC 398
>LOC_Os10g24310:12010.t01856:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 8957 Score = 37.3 bits (75), Expect = 0.40 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 / -1 Query: 1450 PKSTCTRCSSSPWCCVALCICW 1515 P S C RC S P V LC+CW Sbjct: 4874 PSSACGRCPSLPLFLVCLCVCW 4809
>LOC_Os11g17230:12011.t01501:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4057 Score = 29.9 bits (59), Expect(3) = 0.45 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +1 / -3 Query: 1480 SPWCCVALCICWTC 1521 S CC+ CICW C Sbjct: 230 SACCCIFWCICWCC 189 Score = 26.7 bits (52), Expect(3) = 0.45 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 / -3 Query: 822 LGRCSCTYHPTIELVCPKVER 884 LG C CT P + CPK+ + Sbjct: 3392 LGNCCCTRIPHMASFCPKLHQ 3330 Score = 24.9 bits (48), Expect(3) = 0.45 Identities = 6/13 (46%), Positives = 11/13 (84%) Frame = +3 / -1 Query: 975 YIWDGSTLPPPYG 1013 ++W G++L PP+G Sbjct: 361 FLWHGASLSPPWG 323
>LOC_Os02g47690:12002.t04353:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5734 Score = 29.0 bits (57), Expect(3) = 0.61 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = +1 / -1 Query: 1471 CSSSPWCCVALCICWTC 1521 C S C + CICW C Sbjct: 1642 CCCSACCSILWCICWCC 1592 Score = 28.6 bits (56), Expect(3) = 0.61 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 / -2 Query: 1904 PYTSTDQAAGLCVWSSCHCNFTHIILPGSTKL 1999 P+ ST G V +SC T II+ GST++ Sbjct: 627 PHHSTHVTKGGVVLASCRTEGTDIIIAGSTRV 532 Score = 24.4 bits (47), Expect(3) = 0.61 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +3 / -3 Query: 825 GRCSCTYHPTIELVCPKVER 884 G C CT P + CPK+ + Sbjct: 5300 GSCCCTRIPHMASFCPKLHQ 5241
>LOC_Os12g20470:12012.t01888:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5765 Score = 30.4 bits (60), Expect(3) = 0.81 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +1 / -2 Query: 1480 SPWCCVALCICWTC 1521 S CC+ CICW C Sbjct: 1447 SACCCILWCICWCC 1406 Score = 26.3 bits (51), Expect(3) = 0.81 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 / -3 Query: 822 LGRCSCTYHPTIELVCPKVER 884 LG C CT P + CPK+ + Sbjct: 5100 LGSCCCTRIPHMASFCPKLHQ 5038 Score = 24.9 bits (48), Expect(3) = 0.81 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = +2 / -2 Query: 1820 SSEGSHSFECWTPC 1861 SS+ SH WTPC Sbjct: 475 SSQASHHSRPWTPC 434
>LOC_Os10g07200:12010.t00581:unspliced-genomic hsp20/alpha crystallin family protein, expressed| Length = 1982 Score = 35.9 bits (72), Expect = 1.0 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +1 / -2 Query: 1453 KSTCTRCSSSPWCCVALCICWTCHMVPSG 1539 + TCT C PWC + I CH+ SG Sbjct: 1720 RHTCTSCKIIPWCLIGRRIILGCHISTSG 1634
>LOC_Os09g23310:12009.t02015:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4167 Score = 35.4 bits (71), Expect = 1.4 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 / -2 Query: 1462 CTRCSSSPWCCVALCICWTCHMVPSGV 1542 C C S CC+ CICW C + + + Sbjct: 1169 CYCCCCSVCCCILWCICWCCCCIMAAI 1089
>LOC_Os03g06920:12003.t00558:unspliced-genomic DRD1, putative, expressed| Length = 7317 Score = 35.4 bits (71), Expect = 1.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 / -2 Query: 1438 CQQRPKSTCTRCSSSPWCCVALCICWTCHMVPSGVHQKYMA 1560 C +TC C+SS CC + C TC S + +Y A Sbjct: 845 CSSCCAATCFACASSMACCRSRCCASTCFACASSTYLRYHA 723
>LOC_Os12g04810:12012.t00368:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5897 Score = 29.0 bits (57), Expect(3) = 1.5 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = +1 / -2 Query: 1471 CSSSPWCCVALCICWTC 1521 C S C + CICW C Sbjct: 1630 CCCSACCSILWCICWCC 1580 Score = 27.2 bits (53), Expect(3) = 1.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 / -1 Query: 1904 PYTSTDQAAGLCVWSSCHCNFTHIILPGSTKL 1999 P+ ST G V +SC T II GST++ Sbjct: 626 PHHSTHVTKGGVVLASCRTEGTDIITTGSTRV 531 Score = 24.4 bits (47), Expect(3) = 1.5 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +3 / -2 Query: 825 GRCSCTYHPTIELVCPKVER 884 G C CT P + CPK+ + Sbjct: 5290 GSCCCTRIPHMASFCPKLHQ 5231
>LOC_Os05g12490:12005.t01076:unspliced-genomic integral membrane protein like, putative, expressed| Length = 5395 Score = 27.6 bits (54), Expect(2) = 1.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 / -1 Query: 1474 SSSPWCCVALCICWTCHMVPS 1536 SSS CC +LC+ CH++ S Sbjct: 2110 SSSI*CCFSLCLASRCHVLLS 2048 Score = 24.4 bits (47), Expect(2) = 1.9 Identities = 7/11 (63%), Positives = 10/11 (90%) Frame = +2 / -3 Query: 1526 WSLVVYIRNIW 1558 WS+ +YIRNI+ Sbjct: 2021 WSITIYIRNIF 1989
>LOC_Os03g53000:12003.t04623:unspliced-genomic double strand break repair protein, putative, expressed| Length = 2762 Score = 35.0 bits (70), Expect = 2.0 Identities = 10/27 (37%), Positives = 19/27 (70%) Frame = -2 / +1 Query: 1041 MHALVLIQTSHMVEAKCFHPIYIYVCV 961 +H+LV ++ H ++ K FHP+ + VC+ Sbjct: 1909 VHSLVFVKDEHFLQFKKFHPLALLVCI 1989
>LOC_Os04g22000:12004.t01931:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2579 Score = 34.1 bits (68), Expect(2) = 2.4 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +1 / -2 Query: 1471 CSSSPWCCVALCICWTCHMVPSGV 1542 C S CC+ CICW C + + + Sbjct: 1453 CCCSSCCCILWCICWCCCCIMAAI 1382 Score = 23.5 bits (45), Expect(2) = 2.4 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +3 / -3 Query: 702 LPRCSGCHWQ 731 LP SGCHW+ Sbjct: 2175 LPGGSGCHWR 2146
>LOC_Os09g04200:12009.t00316:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 2456 Score = 28.6 bits (56), Expect(2) = 2.7 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 / -1 Query: 857 RASLPKSREEISRFYVICGSCHEQPLVCFLVQ*RDTHTYIYM 982 R LP ++ + IC + L+ ++ R THTYI+M Sbjct: 1385 RFVLPTGTKDRCTIFFICMALFAAWLIIYIYIYRHTHTYIHM 1260 Score = 23.1 bits (44), Expect(2) = 2.7 Identities = 6/17 (35%), Positives = 13/17 (76%) Frame = +1 / -1 Query: 961 HTHIYIYGMEALCLHHM 1011 HTH YI+ ++ + +H++ Sbjct: 1283 HTHTYIHMLQYIYMHNI 1233
>LOC_Os11g31420:12011.t02740:unspliced-genomic expressed protein| Length = 8239 Score = 28.1 bits (55), Expect(2) = 3.3 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -3 / -2 Query: 980 YIYMCVCPSTELGNKLKVAHGTTH 909 YIY+CVC +T + + HG H Sbjct: 855 YIYVCVCRTTIWRYRRHILHGA*H 784 Score = 23.1 bits (44), Expect(2) = 3.3 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = -2 / -3 Query: 1074 ISSSIKFFVHFMHALVLIQTSHMVEAKCFHPIYIYVCV 961 + S K F+ + + + I S + + + IYIY+CV Sbjct: 953 LRKS*KIFILYN*SKIQILLSSLYKEYIYIYIYIYMCV 840
>LOC_Os01g67710:12001.t06128:unspliced-genomic hypothetical protein| Length = 1833 Score = 34.1 bits (68), Expect = 3.7 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -3 / +3 Query: 1931 QPPGLCLYTVTIVCIVSSLCSSLHTVSNTRSCG 1833 QP G +Y +T++ ++++ CSSL + SCG Sbjct: 594 QPLGALMYVMTVLTVITAGCSSLVDPVRSHSCG 692
>LOC_Os07g18190:12007.t01678:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 7077 Score = 34.1 bits (68), Expect = 3.7 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = +2 / -3 Query: 1181 ATLLRVSSGPTHICPFAISRISSAMSYDSVLCLSRAVLAHLFLQITMSAVREWAAS 1348 AT+L + + I P ++ ++SSA + S+ S + + HL Q ++ R W+A+ Sbjct: 460 ATILSIVDTISPITPSSMVQVSSATAASSIPPRSMSTILHLAFQTSVREERPWSAA 293
>LOC_Os02g19820:12002.t01774:unspliced-genomic expressed protein| Length = 4232 Score = 34.1 bits (68), Expect = 3.7 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 / +3 Query: 1441 GKEHSQCRHLCRCLPLP*IVNCHS 1370 G S C H+C C P+P + +CHS Sbjct: 2598 GSPLSCCLHMCECDPVPYMASCHS 2669
>LOC_Os03g36360:12003.t03106:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 999 Score = 27.6 bits (54), Expect(2) = 3.9 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 / -1 Query: 1904 PYTSTDQAAGLCVWSSCHCNFTHIILPGSTKL 1999 P+ ST G V +SC T II GST++ Sbjct: 405 PHHSTHVTKGGVVLASCRTESTDIITAGSTRV 310 Score = 23.5 bits (45), Expect(2) = 3.9 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +2 / -3 Query: 1811 DLLSSEGSHSFECWTPC 1861 +L SS SH WTPC Sbjct: 484 EL*SSLASHRSRPWTPC 434
>LOC_Os04g32540:12004.t02933:unspliced-genomic serine carboxypeptidase K10B2.2 precursor, putative, expressed| Length = 3666 Score = 33.6 bits (67), Expect = 5.1 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 / -2 Query: 647 GFQNRNSAV*FYDFTVETNPSDSTIL 570 G QN +S + FYDFT+ DSTIL Sbjct: 2138 GCQNLDSVIRFYDFTILVKVPDSTIL 2061
>LOC_Os01g47770:12001.t04223:unspliced-genomic nudC domain-containing protein 2, putative, expressed| Length = 3104 Score = 33.6 bits (67), Expect = 5.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 / -1 Query: 1088 FLASKYLQA*SFLFILCMLWF*FKQAIWWR 999 +L K LQ FLF++C +W * A++WR Sbjct: 2195 YLFLKPLQHKPFLFLVCSIWI*ATLALYWR 2106
>LOC_Os11g20610:12011.t01830:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4565 Score = 33.6 bits (67), Expect = 5.1 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +1 / -1 Query: 1471 CSSSPWCCVALCICWTC 1521 C S CC+ CICW C Sbjct: 239 CCCSACCCILWCICWCC 189
>LOC_Os10g10840:12010.t00889:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2942 Score = 33.6 bits (67), Expect = 5.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 / +2 Query: 1462 CTRCSSSPWCCVALCICWTCHMVPSGVHQKYMADTSKIVLAHSVI 1596 CTR S +P C +CH S ++Y+++TSK HS I Sbjct: 797 CTRYSRTPLSLATHTSCQSCHTTHSIRLRRYVSETSKP*SEHSFI 931
>LOC_Os07g32540:12007.t02936:unspliced-genomic hypothetical protein| Length = 219 Score = 33.6 bits (67), Expect = 5.1 Identities = 11/39 (28%), Positives = 18/39 (46%) Frame = -1 / +2 Query: 1258 THSRRYSRNGKWTYMGGPTRNAKQSCSKASPRWNWKVEC 1142 T + + WT +GG T A +S + W W+ +C Sbjct: 20 TRAEEWRLTSSWTVVGGCTSEAGRSWKEERVAWRWRRQC 136
>LOC_Os01g46690:12001.t04119:unspliced-genomic hypothetical protein| Length = 2608 Score = 33.6 bits (67), Expect = 5.1 Identities = 13/53 (24%), Positives = 25/53 (47%) Frame = +1 / -2 Query: 1432 APCQQRPKSTCTRCSSSPWCCVALCICWTCHMVPSGVHQKYMADTSKIVLAHS 1590 +PC +TC R +++ LC C P+ ++ M++ IV+ H+ Sbjct: 1824 SPCGSSEDATCVRVANADMVFAILCSLLRCPKTPTSSNRMTMSNIDNIVVWHT 1666
>LOC_Os03g38740:12003.t03316:unspliced-genomic type III restriction enzyme, res subunit family protein, expressed| Length = 14894 Score = 25.8 bits (50), Expect(2) = 5.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +1 / +2 Query: 1273 MLVTSCSGAFVSADHNVS 1326 ML+ SC+ F S DH++S Sbjct: 5012 MLLLSCTKTFCSFDHSIS 5065 Score = 24.4 bits (47), Expect(2) = 5.7 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 / +3 Query: 1146 STFQFHLGDALEQLCFAFLV 1205 +TF LGD LCF FLV Sbjct: 4971 TTFNK*LGDCKRCLCFYFLV 5030
>LOC_Os11g16870:12011.t01466:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5974 Score = 28.6 bits (56), Expect(3) = 5.9 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = +1 / -2 Query: 1471 CSSSPWCCVALCICWTC 1521 C S C + CICW C Sbjct: 1647 CCCSVCCIILWCICWCC 1597 Score = 25.4 bits (49), Expect(3) = 5.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +2 / -1 Query: 1904 PYTSTDQAAGLCVWSSCHCNFTHIILPGST 1993 P+ ST G V +SC T II GST Sbjct: 625 PHHSTHVTKGGVVLASCRTEGTDIITVGST 536 Score = 24.4 bits (47), Expect(3) = 5.9 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +3 / -3 Query: 825 GRCSCTYHPTIELVCPKVER 884 G C CT P + CPK+ + Sbjct: 5306 GSCCCTRIPHMASFCPKLHQ 5247
>LOC_Os02g57930:12002.t05364:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5457 Score = 31.3 bits (62), Expect(2) = 6.1 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = +1 / -2 Query: 1468 RCSSSPWCCVALCICWTC 1521 RC S C + CICW C Sbjct: 1454 RCCCSACCSILWCICWCC 1401 Score = 25.8 bits (50), Expect(2) = 6.1 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = +3 / -3 Query: 822 LGRCSCTYHPTIELVCPKVER 884 LG C C P + CPK+ R Sbjct: 5110 LGNCCCMRIPHMASCCPKLHR 5048
>LOC_Os09g15470:12009.t01335:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5713 Score = 29.0 bits (57), Expect(2) = 6.3 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = +1 / -3 Query: 1471 CSSSPWCCVALCICWTC 1521 C S C + CICW C Sbjct: 1442 CCCSACCIILWCICWCC 1392 Score = 28.1 bits (55), Expect(2) = 6.3 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +3 / -3 Query: 822 LGRCSCTYHPTIELVCPKVER 884 LG C CT P + CPK+ R Sbjct: 5048 LGSCCCTRIPHMASFCPKLHR 4986
>LOC_Os02g19540:12002.t01747:unspliced-genomic F-box domain containing protein| Length = 1873 Score = 28.1 bits (55), Expect(2) = 6.7 Identities = 9/26 (34%), Positives = 12/26 (46%) Frame = +1 / -3 Query: 1486 WCCVALCICWTCHMVPSGVHQKYMAD 1563 WCCV C C S + +KY + Sbjct: 1748 WCCVNYCFCGLSCKTGSHLSKKYQTE 1671 Score = 22.1 bits (42), Expect(2) = 6.7 Identities = 7/13 (53%), Positives = 9/13 (69%) Frame = +1 / -2 Query: 1468 RCSSSPWCCVALC 1506 R + +P CCV LC Sbjct: 1776 RKTCNPICCVVLC 1738
>LOC_Os03g14310:12003.t01222:unspliced-genomic expressed protein| Length = 3065 Score = 33.1 bits (66), Expect = 7.0 Identities = 18/52 (34%), Positives = 26/52 (50%) Frame = -3 / +2 Query: 1925 PGLCLYTVTIVCIVSSLCSSLHTVSNTRSCGYLPMKVDHLGITHYELYILLL 1770 P L I+ +SS SSLHT S+ ++C Y H + + YI+LL Sbjct: 1226 PSTTLKVWVILYQISSPVSSLHTRSSQKACRYYYYDTQHT*LFTHLKYIVLL 1381
>LOC_Os12g22250:12012.t01964:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6667 Score = 33.1 bits (66), Expect = 7.1 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 / +1 Query: 1450 PKSTCTRCSSSPWCCVALCICW 1515 P STC R S P V LC+CW Sbjct: 694 PSSTCGRRPSLPLFPVCLCVCW 759
>LOC_Os07g26400:12007.t02336:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 1957 Score = 33.1 bits (66), Expect = 7.1 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 / +2 Query: 1450 PKSTCTRCSSSPWCCVALCICW 1515 P STC R S P V LC+CW Sbjct: 749 PSSTCGRRPSLPLFPVCLCVCW 814
>LOC_Os05g34350:12005.t03029:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 6627 Score = 33.1 bits (66), Expect = 7.1 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 / +2 Query: 1450 PKSTCTRCSSSPWCCVALCICW 1515 P S C R SS P V LC+CW Sbjct: 776 PSSACGRRSSLPLFPVCLCVCW 841
>LOC_Os04g45040:12004.t04039:unspliced-genomic ATP-dependent RNA helicase dhh1, putative, expressed| Length = 6194 Score = 33.1 bits (66), Expect = 7.1 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = -1 / +3 Query: 1156 WKVECQICYFYLTFLGSTHNRNRSWLLNIFKHKVFCSFY 1040 W + + C ++ + H N SW+L+ F VFC+ + Sbjct: 5904 WFIPPERCCHRVSVVNQHHGLNVSWILSAFHFPVFCTIF 6020
>LOC_Os02g30010:12002.t02694:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2648 Score = 33.1 bits (66), Expect = 7.1 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 / +1 Query: 1450 PKSTCTRCSSSPWCCVALCICW 1515 P S C+R S P V LC+CW Sbjct: 691 PSSACSRRPSFPLFLVCLCVCW 756
>LOC_Os01g53350:12001.t04756:unspliced-genomic anthocyanidin 5,3-O-glucosyltransferase, putative, expressed| Length = 1891 Score = 33.1 bits (66), Expect = 7.1 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +1 / +1 Query: 1432 APCQQRPKSTCTRCSSSPWCC 1494 +PC P+S+ + ++SPWCC Sbjct: 175 SPCWSSPRSSSSTGTTSPWCC 237
>LOC_Os04g43780:12004.t03918:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 921 Score = 26.7 bits (52), Expect(2) = 7.1 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 / -1 Query: 1904 PYTSTDQAAGLCVWSSCHCNFTHIILPGSTKL 1999 P+ ST G V +SC T +I GST++ Sbjct: 405 PHHSTHVTKGGVVLASCRTESTDLITAGSTRV 310 Score = 23.5 bits (45), Expect(2) = 7.1 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +2 / -3 Query: 1811 DLLSSEGSHSFECWTPC 1861 +L SS SH WTPC Sbjct: 484 EL*SSLASHRSRPWTPC 434
>LOC_Os05g03690:12005.t00266:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5710 Score = 27.2 bits (53), Expect(3) = 7.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +2 / -2 Query: 1904 PYTSTDQAAGLCVWSSCHCNFTHIILPGSTKL 1999 P+ ST G V SC T II GST++ Sbjct: 339 PHHSTHVTKGSVVLVSCRTESTDIITAGSTRV 244 Score = 26.3 bits (51), Expect(3) = 7.2 Identities = 7/14 (50%), Positives = 9/14 (64%) Frame = +3 / -2 Query: 1269 CYACHELFWRICFC 1310 C AC + W IC+C Sbjct: 1377 CSACCNILWYICWC 1336 Score = 24.4 bits (47), Expect(3) = 7.2 Identities = 8/20 (40%), Positives = 11/20 (55%) Frame = +3 / -3 Query: 825 GRCSCTYHPTIELVCPKVER 884 G C CT P + CPK+ + Sbjct: 5042 GSCCCTRIPHMASFCPKLHQ 4983
>LOC_Os06g07650:12006.t00647:unspliced-genomic myb-like DNA-binding domain, SHAQKYF class family protein| Length = 2081 Score = 28.1 bits (55), Expect(2) = 8.5 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +2 / -3 Query: 1832 SHSFECWTPCVMSCKDWRRCRR 1897 S S + C C+ WRRCRR Sbjct: 1713 SASHRSYCCCSCWCRPWRRCRR 1648 Score = 27.2 bits (53), Expect(2) = 8.5 Identities = 9/17 (52%), Positives = 9/17 (52%) Frame = +1 / -2 Query: 1471 CSSSPWCCVALCICWTC 1521 C S CCV CIC C Sbjct: 1912 C*SFHACCVCACICMNC 1862
>LOC_Os06g02850:12006.t00178:unspliced-genomic expressed protein| Length = 2698 Score = 27.2 bits (53), Expect(2) = 8.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 / -3 Query: 1880 SLCSSLHTVSNTRSCGYLPMKVDHL 1806 S CSS+ + RSCG+LP + L Sbjct: 764 SCCSSVCAM*PARSCGFLPKAKERL 690 Score = 22.6 bits (43), Expect(2) = 8.8 Identities = 7/12 (58%), Positives = 10/12 (83%) Frame = -3 / -1 Query: 1958 SGRNSTRTGQPP 1923 SGR +R+G+PP Sbjct: 874 SGRRGSRSGRPP 839
>LOC_Os11g20490:12011.t01818:unspliced-genomic expressed protein| Length = 3092 Score = 28.6 bits (56), Expect(2) = 9.0 Identities = 13/49 (26%), Positives = 22/49 (44%) Frame = +1 / +1 Query: 73 YKYGNIKMVVFTYFLGNFDIMLIEICICFXXXXXXDLAFLWKYDVHVFV 219 YKY + VF+ I+++ +CI F + LW VH+ + Sbjct: 1201 YKYIFVLYHVFSIVCVFRTIVIVSVCITFNYSLTLKIY*LWSVPVHISI 1347 Score = 27.2 bits (53), Expect(2) = 9.0 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 / +3 Query: 791 ISYGPVSCMDPRPLQLYLSPYHRASLPKSR 880 +S+GP M PRP L + RASL + R Sbjct: 2214 MSFGPWEHMLPRPQPLICAEIGRASLERHR 2303
>LOC_Os01g63120:12001.t05682:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass, expressed| Length = 4452 Score = 29.0 bits (57), Expect(2) = 9.1 Identities = 8/17 (47%), Positives = 9/17 (52%) Frame = +1 / -2 Query: 1471 CSSSPWCCVALCICWTC 1521 C S C + CICW C Sbjct: 239 CCCSACCIILWCICWCC 189 Score = 27.2 bits (53), Expect(2) = 9.1 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +3 / -3 Query: 822 LGRCSCTYHPTIELVCPKV 878 LG C CT P + +CPK+ Sbjct: 3901 LGSCCCTKIPHMANICPKL 3845
>LOC_Os12g27170:12012.t02431:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 1823 Score = 32.7 bits (65), Expect = 9.7 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 / +1 Query: 1438 CQQRPKSTCTRCSSSPWCCVALCICW 1515 C P S C R S P V LC+CW Sbjct: 682 CSCLPSSACGRRPSLPLFPVCLCVCW 759
>LOC_Os11g19864:12011.t01756:unspliced-genomic transposon protein, putative, Pong sub-class, expressed| Length = 9316 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 / -2 Query: 1408 RCLPLP*IVNCHSLKNLG 1355 +C+P P I+ CHSLKN G Sbjct: 8190 KCMPNPKIMRCHSLKNQG 8137
>LOC_Os10g32760:12010.t02584:unspliced-genomic protein binding protein, putative, expressed| Length = 2403 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +1 / +1 Query: 1432 APCQQRPKSTCTRCSSSPWCCVALCICWTC 1521 APC K ++ +CCVA +CW C Sbjct: 2263 APCHTYCKYIVVNIATRKFCCVATFLCW*C 2352
>LOC_Os09g18430:12009.t01628:unspliced-genomic transposon protein, putative, Pong sub-class| Length = 1344 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 / -1 Query: 1408 RCLPLP*IVNCHSLKNLG 1355 +C+P P I+ CHSLKN G Sbjct: 741 KCMPNPKIMRCHSLKNQG 688
>LOC_Os06g36859:12006.t03381:unspliced-genomic transposon protein, putative, Pong sub-class| Length = 1344 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 / -1 Query: 1408 RCLPLP*IVNCHSLKNLG 1355 +C+P P I+ CHSLKN G Sbjct: 741 KCMPNPKIMRCHSLKNQG 688
>LOC_Os06g21507:12006.t01968:unspliced-genomic transposon protein, putative, Pong sub-class| Length = 1344 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 / -1 Query: 1408 RCLPLP*IVNCHSLKNLG 1355 +C+P P I+ CHSLKN G Sbjct: 741 KCMPNPKIMRCHSLKNQG 688
>LOC_Os06g21498:12006.t01967:unspliced-genomic transposon protein, putative, Pong sub-class| Length = 1344 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 / -1 Query: 1408 RCLPLP*IVNCHSLKNLG 1355 +C+P P I+ CHSLKN G Sbjct: 741 KCMPNPKIMRCHSLKNQG 688
>LOC_Os04g44330:12004.t03973:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 3095 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 / +3 Query: 1667 DRLGPRSCLRSSCDLCHWCL 1726 DRL PR LR +C++C WC+ Sbjct: 2220 DRLVPRHHLR*ACNICVWCV 2279
>LOC_Os02g33480:12002.t02991:unspliced-genomic transposon protein, putative, Pong sub-class| Length = 1344 Score = 32.7 bits (65), Expect = 9.7 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 / -1 Query: 1408 RCLPLP*IVNCHSLKNLG 1355 +C+P P I+ CHSLKN G Sbjct: 741 KCMPNPKIMRCHSLKNQG 688
>LOC_Os02g15880:12002.t01381:unspliced-genomic expressed protein| Length = 5030 Score = 32.7 bits (65), Expect = 9.7 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = -1 / -1 Query: 328 SFHLVKQILHISNQEENSHVVANLSCWLDRLI*R*DQQIH 209 S ++ Q++H +E+N H+ L C++ *R D ++H Sbjct: 2474 SMIMIIQLIHTKKKEDNKHI*RKLGCYMLLHT*REDTKVH 2355 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 895,804,440 Number of extensions: 15207276 Number of successful extensions: 65228 Number of sequences better than 10.0: 54 Length of query: 687 Length of database: 55,613,886 Length adjustment: 52 Effective length of query: 635 Effective length of database: 52,687,430 Effective search space: 33456518050 Effective search space used: 33456518050 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
