ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf103i12 |
|---|---|
| Clone Library Name | barley_pub |
>Q99P72:RTN4_MOUSE Reticulon-4 - Mus musculus (Mouse)| Length = 1162 Score = 56.2 bits (134), Expect = 3e-07 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 8/183 (4%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF-LWSNASAFVNK 493 DLL WR+ K +G V + + L V +T +L++ I F ++ + K Sbjct: 977 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1036 Query: 494 CPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLW 652 P EV I E+L + S +N LR + DL L +W Sbjct: 1037 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMW 1096 Query: 653 ILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLS 832 + + +G+ N LTL + + L+++PV+YE+++ +ID + A +K A K + Sbjct: 1097 VFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMA----KIQA 1152 Query: 833 KIP 841 KIP Sbjct: 1153 KIP 1155
>Q9JK11:RTN4_RAT Reticulon-4 - Rattus norvegicus (Rat)| Length = 1163 Score = 55.8 bits (133), Expect = 3e-07 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 8/183 (4%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF-LWSNASAFVNK 493 DLL WR+ K +G V + + L V +T +L++ I F ++ + K Sbjct: 978 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1037 Query: 494 CPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLW 652 P EV I E+L + S +N LR + DL L +W Sbjct: 1038 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMW 1097 Query: 653 ILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLS 832 + + +G+ N LTL + + L+++PV+YE+++ +ID + A +K A K + Sbjct: 1098 VFTYVGALFNGLTLLILALISLFSIPVIYERHQVQIDHYLGLANKSVKDAMA----KIQA 1153 Query: 833 KIP 841 KIP Sbjct: 1154 KIP 1156
>Q9NQC3:RTN4_HUMAN Reticulon-4 - Homo sapiens (Human)| Length = 1192 Score = 55.8 bits (133), Expect = 3e-07 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 8/183 (4%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF-LWSNASAFVNK 493 DLL WR+ K +G V + + L V +T +L++ I F ++ + K Sbjct: 1007 DLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQK 1066 Query: 494 CPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAGLW 652 P EV I E+L + S +N LR + DL L +W Sbjct: 1067 SDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMW 1126 Query: 653 ILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLS 832 + + +G+ N LTL + + L++VPV+YE+++ +ID + A +K A K + Sbjct: 1127 VFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMA----KIQA 1182 Query: 833 KIP 841 KIP Sbjct: 1183 KIP 1185
>Q5RBL9:RTN3_PONPY Reticulon-3 - Pongo pygmaeus (Orangutan)| Length = 236 Score = 54.7 bits (130), Expect = 7e-07 Identities = 42/194 (21%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 487 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 50 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107 Query: 488 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 646 K P ++ + + N + INR + + DL L + Sbjct: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167 Query: 647 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKC 826 +W+++ +G+ N +TL + +++++VP++YEKY+ +ID + A + K EK Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKI 223 Query: 827 LSKIPKGPSKDKKQ 868 +K+P G +K K + Sbjct: 224 QAKLP-GIAKKKAE 236
>O95197:RTN3_HUMAN Reticulon-3 - Homo sapiens (Human)| Length = 1032 Score = 54.7 bits (130), Expect = 7e-07 Identities = 42/194 (21%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 487 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 846 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 903 Query: 488 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 646 K P ++ + + N + INR + + DL L + Sbjct: 904 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 963 Query: 647 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKC 826 +W+++ +G+ N +TL + +++++VP++YEKY+ +ID + A + K EK Sbjct: 964 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKI 1019 Query: 827 LSKIPKGPSKDKKQ 868 +K+P G +K K + Sbjct: 1020 QAKLP-GIAKKKAE 1032
>Q08D83:RTN3_BOVIN Reticulon-3 - Bos taurus (Bovine)| Length = 256 Score = 53.9 bits (128), Expect = 1e-06 Identities = 41/194 (21%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 487 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 70 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 127 Query: 488 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 646 K P ++ + + N + INR + + DL L + Sbjct: 128 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 187 Query: 647 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKC 826 +W+++ +G+ N +TL + ++++++P++YEKY+ +ID + A + K EK Sbjct: 188 MWLMTYVGAVFNGITLLILAELLVFSIPIVYEKYKTQIDHYVGIARDQTKSIV----EKI 243 Query: 827 LSKIPKGPSKDKKQ 868 +K+P G +K K + Sbjct: 244 QAKLP-GIAKKKAE 256
>Q5IS59:RTN1_PANTR Reticulon-1 - Pan troglodytes (Chimpanzee)| Length = 776 Score = 53.5 bits (127), Expect = 2e-06 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Frame = +2 Query: 308 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 478 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 588 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645 Query: 479 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 637 V K P E+ + ++ L++ +N LR + +DL L Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705 Query: 638 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 769 +W+L+ +G+ N LTL + + ++T+PV+Y K++ +ID + Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>Q16799:RTN1_HUMAN Reticulon-1 - Homo sapiens (Human)| Length = 776 Score = 53.5 bits (127), Expect = 2e-06 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Frame = +2 Query: 308 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 478 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 588 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645 Query: 479 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 637 V K P E+ + ++ L++ +N LR + +DL L Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705 Query: 638 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 769 +W+L+ +G+ N LTL + + ++T+PV+Y K++ +ID + Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQY 749
>Q68EW1:RTN3B_XENLA Reticulon-3-B - Xenopus laevis (African clawed frog)| Length = 214 Score = 53.1 bits (126), Expect = 2e-06 Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 15/199 (7%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWL------LFEVLEYHLLTLLCHGFILTLGILF-LWSNA 475 DLL WR+ K SG V G + L + V+ Y +L+LL ++ I F ++ + Sbjct: 28 DLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLL------SVTISFRVYKSV 81 Query: 476 SAFVNKCPPNIP-EVKIPEDLAVN-------VARSLRYEINRGFASLRAIGQGRDLKKFL 631 V K P + + +D+A++ ++ SL + +N S+ + DL L Sbjct: 82 LQAVQKTEEGHPFKPLLEKDIALSSDSFQKGLSSSLAH-VNHALKSIVRLFLVEDLVDSL 140 Query: 632 IVVAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAI 811 + +W+++ +G+ N +TL + ++ +T P++YEKY+ +ID + ++K Sbjct: 141 KLALLMWLMTYIGAVFNGITLLILGVLLAFTTPLVYEKYKVQIDHYVSLVHSQVKS---- 196 Query: 812 FDEKCLSKIPKGPSKDKKQ 868 EK +K+P G K K + Sbjct: 197 ITEKIQAKLP-GALKKKSE 214
>Q9ES97:RTN3_MOUSE Reticulon-3 - Mus musculus (Mouse)| Length = 964 Score = 52.4 bits (124), Expect = 4e-06 Identities = 40/194 (20%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 487 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 778 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 835 Query: 488 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 646 K P ++ + + N + +N+ + + DL L + Sbjct: 836 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 895 Query: 647 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKC 826 +W+++ +G+ N +TL + +++++VP++YEKY+ +ID + A + K EK Sbjct: 896 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKI 951 Query: 827 LSKIPKGPSKDKKQ 868 +K+P G +K K + Sbjct: 952 QAKLP-GIAKKKAE 964
>Q64548:RTN1_RAT Reticulon-1 - Rattus norvegicus (Rat)| Length = 777 Score = 51.6 bits (122), Expect = 6e-06 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Frame = +2 Query: 308 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 478 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 589 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 646 Query: 479 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 637 V K P E+ + ++ L+ +N LR + +DL L Sbjct: 647 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 706 Query: 638 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 769 +W+L+ +G+ N LTL + + ++T+PV+Y K++ ++D + Sbjct: 707 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 750
>Q8K0T0:RTN1_MOUSE Reticulon-1 - Mus musculus (Mouse)| Length = 780 Score = 51.6 bits (122), Expect = 6e-06 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Frame = +2 Query: 308 KPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNAS 478 K DLL WR+ K +G V + + LLF + ++ +++++ + + L ++ + Sbjct: 592 KAIDLLYWRDIKQTGIVFG--SFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 649 Query: 479 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 637 V K P E+ + ++ L+ +N LR + +DL L Sbjct: 650 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKF 709 Query: 638 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 769 +W+L+ +G+ N LTL + + ++T+PV+Y K++ ++D + Sbjct: 710 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQY 753
>Q6RJR6:RTN3_RAT Reticulon-3 - Rattus norvegicus (Rat)| Length = 940 Score = 50.4 bits (119), Expect = 1e-05 Identities = 39/194 (20%), Positives = 91/194 (46%), Gaps = 10/194 (5%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILF---LWSNASAFV 487 DL+ WR+ K +G V T + +L + + +++++ + + L + ++ + V Sbjct: 754 DLIFWRDVKKTGFVFG--TTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 811 Query: 488 NKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIVVAG 646 K P ++ + + + + +N+ + + DL L + Sbjct: 812 QKSEEGHPFKAYLDVDITLSSEAFHSYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVF 871 Query: 647 LWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFDEKC 826 +W+++ +G+ N +TL + +++++VP++YEKY+ +ID + A + K EK Sbjct: 872 MWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIV----EKI 927 Query: 827 LSKIPKGPSKDKKQ 868 +K+P G +K K + Sbjct: 928 QAKLP-GIAKKKAE 940
>Q5J6M8:RTN3A_XENLA Reticulon-3-A - Xenopus laevis (African clawed frog)| Length = 214 Score = 50.4 bits (119), Expect = 1e-05 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWL------LFEVLEYHLLTLLCHGFILTLGILF-LWSNA 475 DLL WR+ K SG V G + L + V+ Y +L+LL T+ I + ++ + Sbjct: 28 DLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLL------TVTISYRVYKSV 81 Query: 476 SAFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLI 634 V K P ++ + D + +N + + DL L Sbjct: 82 LQAVQKTDEGHPFKPLLEKDITLSSDSFQKALTASLAHVNHALKYIVRLFLVDDLVDSLK 141 Query: 635 VVAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIF 814 + +W+++ +G+ N +TL + ++ +T P++YEKY+ +ID + ++K Sbjct: 142 LALLMWLMTYVGAVFNGITLLILGVLLTFTAPIVYEKYKVQIDHYVSLVHSQVKS----I 197 Query: 815 DEKCLSKIPKGPSKDKKQ 868 EK +K+P G K K + Sbjct: 198 TEKIQAKLP-GALKKKSE 214
>Q28D16:RTN3_XENTR Reticulon-3 - Xenopus tropicalis (Western clawed frog) (Silurana| tropicalis) Length = 213 Score = 50.1 bits (118), Expect = 2e-05 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 13/197 (6%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWL------LFEVLEYHLLTLLCHGFILTLGILFLWSNAS 478 DLL WR+ K SG V G + L + V+ Y +L+LL +T+ S Sbjct: 27 DLLYWRDVKQSGMVFGGTMVLLLSLAAFSIISVISYLVLSLLA----VTISYRVYKSVLQ 82 Query: 479 AFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFLIV 637 A V K P ++ + D + +N + + DL L + Sbjct: 83 A-VQKTDEGHPFKPLLEKDIALSSDAFQKALSTSLAHVNHALKYIVRLFLVEDLVDSLKL 141 Query: 638 VAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAFGEKAMVELKKYYAIFD 817 +W+++ +G+ N +TL + ++ +T P++YEKY+ +ID + +K Sbjct: 142 ALLMWLMTYVGAVFNGITLLILGVLLAFTAPIVYEKYKVQIDHYVSLVHSHVKS----IT 197 Query: 818 EKCLSKIPKGPSKDKKQ 868 EK +K+P G K K + Sbjct: 198 EKIQAKLP-GALKKKSE 213
>O70622:RTN2_MOUSE Reticulon-2 - Mus musculus (Mouse)| Length = 471 Score = 44.7 bits (104), Expect = 8e-04 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 10/162 (6%) Frame = +2 Query: 314 ADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCH----GFILTLGILFLWSNASA 481 ADLL W++ + SG V G A L +L + ++++ H G T+ + A Sbjct: 273 ADLLYWKDTRTSGAVFTGLMASLLC--LLHFSIVSVAAHLALLGLCATISLRVYRKVLQA 330 Query: 482 FVNKCPPNIPEVKIPEDLAVN------VARSLRYEINRGFASLRAIGQGRDLKKFLIVVA 643 N + + DL + +++ + + LR DL L + Sbjct: 331 VHRGDGTNPFQAYLDMDLTLTREQTERLSQQIASHVVSTATQLRHFFLVEDLVDSLKLAL 390 Query: 644 GLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 769 +IL+ +G+ N LTL + + L+TVP+LY +++ +ID + Sbjct: 391 LFYILTFVGAIFNGLTLVILGVVALFTVPLLYRQHQAQIDQY 432
>O75298:RTN2_HUMAN Reticulon-2 - Homo sapiens (Human)| Length = 545 Score = 44.3 bits (103), Expect = 0.001 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%) Frame = +2 Query: 302 GGKPADLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCH-GFILTLGILFL--WSN 472 G K ADLL W++ + SG V G L +L + ++++ H +L G + L + Sbjct: 342 GSKVADLLYWKDTRTSGVVFTGLMVSLLC--LLHFSIVSVAAHLALLLLCGTISLRVYRK 399 Query: 473 ASAFVNKCPPNIP-------EVKIPEDLAVNVARSLRYEINRGFASLRAIGQGRDLKKFL 631 V++ P ++ + + ++ + + LR DL L Sbjct: 400 VLQAVHRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSL 459 Query: 632 IVVAGLWILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDAF 769 + +IL+ +G+ N LTL + + L+T+P+LY +++ +ID + Sbjct: 460 KLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQY 505
>Q2GCD7:RPOB_NOVAD DNA-directed RNA polymerase beta chain - Novosphingobium| aromaticivorans (strain DSM 12444) Length = 1392 Score = 37.7 bits (86), Expect = 0.093 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = -2 Query: 739 VQDRHGVEYHE-DYVEQGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLI 563 V +RHG+E + Q EEI AK RED +A + F ++ + G A+ AP + Sbjct: 950 VFNRHGIEIDDRTRAIQNEEIERLAKDREDERAILNRATFNRLKDMLLGQVAAAAPKGI- 1008 Query: 562 AQRAGNIDRQVLRDL--HLW 509 ++ ID QVL D+ H W Sbjct: 1009 -KKGVEIDEQVLADVERHEW 1027
>P03322:GAG_RSVP Gag polyprotein [Contains: Core protein p19; Core protein p2A; Core| protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 - Rous sarcoma virus (strain Prague C) (RSV-PrC) Length = 701 Score = 34.7 bits (78), Expect = 0.79 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -1 Query: 755 CPHTSRTGQARCRVP*RLCRTR*GNCRSCQEQRGSTGLQPQSGISSGRGLGQWP 594 CP ++G +R R +LC N + C+++ G+ G +P G+SS G WP Sbjct: 522 CPKKRKSGNSRERC--QLCNGMGHNAKQCRKRDGNQGQRPGKGLSS----GPWP 569
>Q68FT3:CJ033_RAT Probable oxidoreductase C10orf33 homolog - Rattus norvegicus (Rat)| Length = 581 Score = 34.7 bits (78), Expect = 0.79 Identities = 23/66 (34%), Positives = 35/66 (53%) Frame = -2 Query: 664 SREDPQACNHNQEFLQVAALANGPQASKAPVDLIAQRAGNIDRQVLRDLHLWNVGRALVD 485 SR+D QA +EF++ LA P APVD+ A + G++ L+ L + R L+ Sbjct: 152 SRKDAQAFPRYEEFMKRLVLAIDPLLDAAPVDIAALQHGSL----LQRLRALSTLRPLLK 207 Query: 484 EGRGVG 467 GR +G Sbjct: 208 AGRTLG 213
>Q04947:RTN1_YEAST Reticulon-like protein 1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 295 Score = 34.3 bits (77), Expect = 1.0 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 9/159 (5%) Frame = +2 Query: 317 DLLLWRNKKISGGVLAGATAIWLLFEVLEYHLLTLLCHGFILTLGILFLWSNASA-FVNK 493 DLLLWRN +G G+ L+ + + +L+T F L + L++ S FV+K Sbjct: 22 DLLLWRNPVQTGKYFGGSLLALLILK--KVNLIT-----FFLKVAYTILFTTGSIEFVSK 74 Query: 494 CPPNIPEV-KIPEDLAVNVARSLRYEINRGF-------ASLRAIGQGRDLKKFLIVVAGL 649 + K N+A ++ I+ A +R + K L Sbjct: 75 LFLGQGLITKYGPKECPNIAGFIKPHIDEALKQLPVFQAHIRKTVFAQVPKHTFKTAVAL 134 Query: 650 WILSALGSSCNFLTLFYIVFMVLYTVPVLYEKYEDKIDA 766 ++L S + T+ ++ + +T+PV+Y Y+ +IDA Sbjct: 135 FLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEIDA 173
>Q96PE2:ARHGH_HUMAN Rho guanine nucleotide exchange factor 17 - Homo sapiens (Human)| Length = 2063 Score = 34.3 bits (77), Expect = 1.0 Identities = 22/64 (34%), Positives = 30/64 (46%) Frame = +1 Query: 496 PSQHSRGEDP*GPGGQCCPLAAL*DQQGLC*PEGHWPRPRPEEIPDCGCRPVDPLCSWQL 675 P++ SR + P P C PLA L + L PE RP++ + RP D L SW + Sbjct: 161 PARESR-QPPTPPPRTCFPLAGLRSARPLTGPETEGRLRRPQQQQERAQRPADGLHSWHI 219 Query: 676 LQFP 687 P Sbjct: 220 FSQP 223
>O26113:RL2_METTH 50S ribosomal protein L2P - Methanobacterium thermoautotrophicum| Length = 241 Score = 33.1 bits (74), Expect = 2.3 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Frame = -2 Query: 406 VLQDLKQQPDGGGAREHPARDLLV----PPQQEVGGLAAAEDG 290 V + P GGG R+HP R V PP ++VG +AA G Sbjct: 196 VAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAARRTG 238
>Q5RAP5:CJ033_PONPY Probable oxidoreductase C10orf33 homolog - Pongo pygmaeus| (Orangutan) Length = 581 Score = 33.1 bits (74), Expect = 2.3 Identities = 25/80 (31%), Positives = 41/80 (51%) Frame = -2 Query: 706 DYVEQGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLIAQRAGNIDRQVL 527 D E ++IA SR+D Q +EF+ ALA P APVD+ A + G++ L Sbjct: 140 DMAENQKQIAQF--SRKDAQVFPRYEEFMHRLALAIDPLLDAAPVDMAAFQRGSL----L 193 Query: 526 RDLHLWNVGRALVDEGRGVG 467 + + ++ + L+ GR +G Sbjct: 194 QRMRSFSTLKPLLKAGRILG 213
>Q3MHH6:CJ033_BOVIN Probable oxidoreductase C10orf33 homolog - Bos taurus (Bovine)| Length = 581 Score = 32.3 bits (72), Expect = 3.9 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = -2 Query: 706 DYVEQGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKAPVDLIAQRAGNIDRQVL 527 D VE ++IA +K +D QA + F+ ALA P APVDL A + G++ Q L Sbjct: 140 DMVENQKQIAQFSK--KDAQAFPKYEAFMDRLALAIDPLLDSAPVDLEAFQRGSL-LQRL 196 Query: 526 RDLH----LWNVG 500 + L LW G Sbjct: 197 KSLSTLKPLWQAG 209
>O13719:YDZC_SCHPO Uncharacterized protein C14C4.12c - Schizosaccharomyces pombe| (Fission yeast) Length = 297 Score = 32.0 bits (71), Expect = 5.1 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Frame = -3 Query: 435 KPWQRRVRRWYSRTSNSSQMAVAPASTP---PEIFLFLHSKRSAGLPPPRTEWTGFSRP 268 K W RR R+W R S + + + A P P FL +H+ + P T +G S P Sbjct: 89 KIWLRRERQWLQRHSPAYRFSTPAAKRPRRQPSSFLDVHASNTRKRGSPDTPDSGHSTP 147
>Q9DCK3:TSN4_MOUSE Tetraspanin-4 - Mus musculus (Mouse)| Length = 238 Score = 32.0 bits (71), Expect = 5.1 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 12/69 (17%) Frame = +2 Query: 629 LIVVAGLWILSALGSSC------------NFLTLFYIVFMVLYTVPVLYEKYEDKIDAFG 772 L++V G ++++ C F L +VF++ T+ VL+ Y DKID++ Sbjct: 56 LLIVTGTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYA 115 Query: 773 EKAMVELKK 799 ++ +LKK Sbjct: 116 QQ---DLKK 121
>O28578:PANE_ARCFU Putative 2-dehydropantoate 2-reductase - Archaeoglobus fulgidus| Length = 294 Score = 32.0 bits (71), Expect = 5.1 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 535 QVLRDLHLWNVGRALVDEGRGV 470 +V+R+ HLW V RA+ DEGR V Sbjct: 198 EVVRNPHLWEVARAVADEGRQV 219
>Q6FRZ9:ATM_CANGA Serine/threonine-protein kinase TEL1 - Candida glabrata (Yeast)| (Torulopsis glabrata) Length = 2763 Score = 31.6 bits (70), Expect = 6.7 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 10/59 (16%) Frame = +2 Query: 692 LFYIVFMVLYTVPV----------LYEKYEDKIDAFGEKAMVELKKYYAIFDEKCLSKI 838 L+YI+ +LY +P LYEKY DK+D EK ++K IFD+ S+I Sbjct: 2269 LWYIMKRLLYKLPFETGYAVINLQLYEKYSDKLD---EKISEKIKAANLIFDQLQNSQI 2324
>Q8G069:RPOB_BRUSU DNA-directed RNA polymerase beta chain - Brucella suis| Length = 1377 Score = 31.2 bits (69), Expect = 8.7 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 754 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 578 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 P 575 P Sbjct: 997 P 997
>Q8YHP8:RPOB_BRUME DNA-directed RNA polymerase beta chain - Brucella melitensis| Length = 1377 Score = 31.2 bits (69), Expect = 8.7 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 754 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 578 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 P 575 P Sbjct: 997 P 997
>Q57CP8:RPOB_BRUAB DNA-directed RNA polymerase beta chain - Brucella abortus| Length = 1377 Score = 31.2 bits (69), Expect = 8.7 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 754 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 578 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 P 575 P Sbjct: 997 P 997
>Q2YM15:RPOB_BRUA2 DNA-directed RNA polymerase beta chain - Brucella abortus (strain| 2308) Length = 1377 Score = 31.2 bits (69), Expect = 8.7 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 754 VLILLVQDRHGVEYHEDYVE-QGEEIAGAAKSREDPQACNHNQEFLQVAALANGPQASKA 578 V+ + V +RHGVE E + + EEI AK R+D QA + ++A + +G A+ Sbjct: 937 VVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAG 996 Query: 577 P 575 P Sbjct: 997 P 997 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 166,418,307 Number of extensions: 3486612 Number of successful extensions: 11130 Number of sequences better than 10.0: 33 Number of HSP's gapped: 11112 Number of HSP's successfully gapped: 33 Length of query: 392 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 277 Effective length of database: 69,142,514 Effective search space: 19152476378 Effective search space used: 19152476378 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
