>Q70M91:PILQ_NEIMB Type IV pilus biogenesis and competence protein pilQ precursor -|
           Neisseria meningitidis serogroup B
          Length = 769
 Score = 38.5 bits (88), Expect = 0.072
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +1

Query: 34  SPSSHRAASVTFPSSPASSQRLPRITRRHCAPRQLQRGAGRKQRAYNSGARARTHYRKSG 213
           +P +    SV+ P SPA  Q      ++  AP + Q  A  KQ+A     +    +RK G
Sbjct: 175 APFTESVVSVSAPFSPAKQQAAASAKQQAAAPAKQQAAAPAKQQAAAPAKQTNIDFRKDG 234

Query: 214 TNGGRWGCCLTGWSGR 261
            N G       G++G+
Sbjct: 235 KNAGIIELAALGFAGQ 250

>P53817:HRSL3_RAT HRAS-like suppressor 3 - Rattus norvegicus (Rat)|
          Length = 160

 Score = 35.0 bits (79), Expect = 0.80
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 261 ELKPGDHIYTWRAAYSYSHHGIYVGGSKVVHFTTKKE---AGTAGLDSAVAISSLI 419
           E KPGD I  +R  YS  H  IYVG   V+H     E   AG A + SA+   +++
Sbjct: 5   EPKPGDLIEIFRPMYS--HWAIYVGDGYVIHLAPPSEIPGAGAASIMSALTDKAIV 58

>P39881:CUTL1_CANFA Homeobox protein cut-like 1 - Canis familiaris (Dog)|
          Length = 975

 Score = 35.0 bits (79), Expect = 0.80
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = -1

Query: 902 PHPNVGDVPAGAVHPGRDGGHAQRAGRHEPERSREKRRQRHADGGGR 762
           P P     PA A       G ++R G     R R +RR+RHA GGGR
Sbjct: 846 PAPGAPAAPAAAAR-----GPSRRPGARAKPRRRRRRRRRHARGGGR 887

>Q15735:PI5PA_HUMAN Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A - Homo|
           sapiens (Human)
          Length = 1006

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 5/162 (3%)
 Frame = -2

Query: 886 VMYLPAQYIPAVTAAMPSGPADMSLNGVEKSAASGTPTAEAA*PLLPMPCSGGSRSPVLQ 707
           V+  P Q +P      PS P   S   +  +   G P+ +   P LP P    SRSP   
Sbjct: 296 VLPRPPQTLPLDVGQGPSEPGTHSPGLLSPTFRPGAPSGQTVPPPLPKPPRSPSRSP--- 352

Query: 706 *SAKSSQLFSNTS*LPNPFWRRYIARCTTASAG-----SDAAVVQVPPRSLARNTAGGTP 542
                     N S    P     + R  T S G     S     Q  P  +  +++  T 
Sbjct: 353 ------SHSPNRSPCVPPAPDMALPRLGTQSTGPGRCLSPNLQAQEAPAPVTTSSSTSTL 406

Query: 541 YSKPWRAPSRRKQSRQVRMTPLSGSWKPQSGNVGHSGEPADM 416
            S PW A    K     R+T +  +W     NVG +  P D+
Sbjct: 407 SSSPWSAQPTWKSDPGFRITVV--TW-----NVGTAMPPDDV 441

>O95237:LRAT_HUMAN Lecithin retinol acyltransferase - Homo sapiens (Human)|
          Length = 230

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 615 DAVVHRAMYLLQNGFGSYDVFENNCEDFALYCKTGLLLPPE 737
           + V  RA  LL  GF  Y +  NNCE F  YC+ G  + P+
Sbjct: 139 EEVARRAEKLL--GFTPYSLLWNNCEHFVTYCRYGTPISPQ 177

>A2SJR5:TRMB_METPP tRNA - Methylibium petroleiphilum (strain PM1)|
          Length = 469

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
 Frame = -1

Query: 875 AGAVHPGRDGGHAQRAGRHEPERSR-----EKRRQRHADGGGRLTAPPDALLGRQQEPGL 711
           A A H GR  G + RAGRH     R       RR +    G R  AP       +  PGL
Sbjct: 68  AMASHRGRRAGRSHRAGRHHAADDRGLQRVRVRRPQSLPPGARAPAPLRPHAADRPRPGL 127

Query: 710 AVER 699
           A  R
Sbjct: 128 AARR 131

>P11536:E74EB_DROME Ecdysone-induced protein 74EF isoform B - Drosophila melanogaster|
           (Fruit fly)
          Length = 883

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 865 YIPAVTAAMPSGPADMSLNGVEKSAASGTPTAEAA*PLLPMP--CSGGSRSPVLQ*SAKS 692
           Y  A T + P  PAD  ++ V+ S++ G P A+     L MP   S  + +     +A +
Sbjct: 464 YTTATTGSFPPSPADSGVSDVDSSSSGGQPCADELKARLGMPPATSASAAAAAAAAAAAA 523

Query: 691 SQLFSNTS*LPN 656
           + L + T   PN
Sbjct: 524 AHLHTGTFLHPN 535

>P20105:E74EA_DROME Ecdysone-induced protein 74EF isoform A - Drosophila melanogaster|
           (Fruit fly)
          Length = 829

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 865 YIPAVTAAMPSGPADMSLNGVEKSAASGTPTAEAA*PLLPMP--CSGGSRSPVLQ*SAKS 692
           Y  A T + P  PAD  ++ V+ S++ G P A+     L MP   S  + +     +A +
Sbjct: 410 YTTATTGSFPPSPADSGVSDVDSSSSGGQPCADELKARLGMPPATSASAAAAAAAAAAAA 469

Query: 691 SQLFSNTS*LPN 656
           + L + T   PN
Sbjct: 470 AHLHTGTFLHPN 481

>Q9H6I2:SOX17_HUMAN Transcription factor SOX-17 - Homo sapiens (Human)|
          Length = 414

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 19/73 (26%)
 Frame = -1

Query: 899 HPNVGDVPAG-----------AVH--------PGRDGGHAQRAGRHEPERSREKRRQRHA 777
           HP +G  PAG           A+H        PG  GG   R  + +P+   + + Q H 
Sbjct: 271 HPRLGPEPAGPSIPGLLAPPSALHVYYGAMGSPGAGGG---RGFQMQPQHQHQHQHQHHP 327

Query: 776 DGGGRLTAPPDAL 738
            G G+ + PP+AL
Sbjct: 328 PGPGQPSPPPEAL 340

>Q5R611:HRSL3_PONPY HRAS-like suppressor 3 - Pongo pygmaeus (Orangutan)|
          Length = 162

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +3

Query: 261 ELKPGDHIYTWRAAYSYSHHGIYVGGSKVVHFTTKKEAGTAGLDSAVA 404
           E KPGD I  +R  Y   H  IYVG   VVH     E   AG  S ++
Sbjct: 7   EPKPGDLIEIFRPFYR--HWAIYVGDGYVVHLAPPSEVAGAGAASVMS 52

>Q8R3U1:HRSL3_MOUSE HRAS-like suppressor 3 - Mus musculus (Mouse)|
          Length = 162

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 261 ELKPGDHIYTWRAAYSYSHHGIYVGGSKVVHFTTKKE---AGTAGLDSAVAISSLI 419
           E KPGD I  +R  Y   H  IYVG   V+H     E   AG A + SA+   +++
Sbjct: 7   EPKPGDLIEIFRPMYR--HWAIYVGDGYVIHLAPPSEIAGAGAASIMSALTDKAIV 60

>P53816:HRSL3_HUMAN HRAS-like suppressor 3 - Homo sapiens (Human)|
          Length = 162

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = +3

Query: 261 ELKPGDHIYTWRAAYSYSHHGIYVGGSKVVHFTTKKEAGTAGLDSAVA 404
           E KPGD I  +R  Y   H  IYVG   VVH     E   AG  S ++
Sbjct: 7   EPKPGDLIEIFRPFYR--HWAIYVGDGYVVHLAPPSEVAGAGAASVMS 52

>P04196:HRG_HUMAN Histidine-rich glycoprotein precursor - Homo sapiens (Human)|
          Length = 525

 Score = 27.3 bits (59), Expect(2) = 3.4
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -1

Query: 932 VLYLDLYHVLPHPNVGDVPAGAVHPGRDGGHAQRAGRHEPERSREKRRQRH 780
           V+  +++    H N+  VP    HP   GGH + +    P +    R   H
Sbjct: 238 VINCEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKPHGSRDHHH 288



 Score = 24.3 bits (51), Expect(2) = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 802 EKSAASGTPTAEAA*PLLPMPCS 734
           E+  + G P  +   PLLPM CS
Sbjct: 303 ERDHSHGPPLPQGPPPLLPMSCS 325

>Q9UL19:TIG3_HUMAN Retinoic acid receptor responder protein 3 - Homo sapiens (Human)|
          Length = 164

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 261 ELKPGDHIYTWRAAYSYSHHGIYVGGSKVVHFTTKKEAGTAGLDSAVAISS 413
           E KPGD I  +R  Y   H  +Y+G   V+H     E   AG  S  ++ S
Sbjct: 7   EPKPGDLIEIFRLGYE--HWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLS 55

>Q9ZHF3:PILQ_NEIME Type IV pilus biogenesis and competence protein pilQ precursor -|
           Neisseria meningitidis
          Length = 766

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +1

Query: 34  SPSSHRAASVTFPSSPASSQRLPRITRRHCAPRQLQRGAGRKQRA-----YNSGARART- 195
           +P +    SV+ P SPA  Q      ++  AP + Q  A  KQ+A       + A A+  
Sbjct: 175 APFTESVVSVSAPFSPAKQQAAASAKQQAAAPAKQQAAASAKQQAAAPAKQQAAAPAKQT 234

Query: 196 --HYRKSGTNGGRWGCCLTGWSGR 261
              +RK G N G       G++G+
Sbjct: 235 NIDFRKDGKNAGIIELAALGFAGQ 258

>Q7M3M6:E74EF_DROVI Ecdysone-induced protein 74EF - Drosophila virilis (Fruit fly)|
          Length = 873

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 865 YIPAVTAAMPSGPADMSLNGVEKSAASGTPTAEAA*PLLPMPCSGGS 725
           Y  A T + P  PAD  ++ V+ S++ G P A+     L MP +  +
Sbjct: 453 YTTATTGSFPPSPADSGVSDVDSSSSGGQPCADELKARLGMPTTAAT 499

>P96740:PGDS_BACSU Gamma-DL-glutamyl hydrolase precursor - Bacillus subtilis|
          Length = 413

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 174 FRRARAHTLPEVRNERGAMGLLSHRVERSELKPGDHIYTWRAAYSYSHHGIYVGGSKVVH 353
           +++A   +LP     +   G    ++E+++LKPGD ++    + + S   IY+G  +VVH
Sbjct: 331 YQKAAGISLPRYATSQYNAGT---KIEKADLKPGDIVFFQSTSLNPS---IYIGNGQVVH 384

Query: 354 FT 359
            T
Sbjct: 385 VT 386

>Q8TAX7:MUC7_HUMAN Mucin-7 precursor - Homo sapiens (Human)|
          Length = 377

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
 Frame = -2

Query: 625 TTASAGSDAAVVQVPPRSLARNTAGGTPYSKPWRAPSRRKQSRQVRMT------------ 482
           TTA+  + +A  Q PP S A       P + P   P+    S     T            
Sbjct: 188 TTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPA 247

Query: 481 PLSGSWKPQSGNVGHSGEPADMRLDIATAESRPAVPASFFVVKCTTLLPPT 329
           PLS S  P++  V  +  P+   LD ++A + P   A+      TT  PP+
Sbjct: 248 PLSSSAPPETTAVPPT--PSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296

>P08098:MOBA1_ECOLI Mobilization protein A - Escherichia coli|
          Length = 529

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -2

Query: 169 RLAASGRRRVGAG---EARSGAE*CEEDAGYWLGLRGRSRLPRDGWRER*SG 23
           +++A G+   GAG    A  G E   E A +  G RGR   P DG R R  G
Sbjct: 306 QVSAGGKHSAGAGGGVRAAGGPEKGREGADHQAGERGRPERPADGQRHRRGG 357

>P34545:CBP1_CAEEL Protein cbp-1 - Caenorhabditis elegans|
          Length = 2056

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -1

Query: 911 HVLPHPNVGDVPAGAVHPGRDGGHAQRAGRHEPERSREKRRQRHA------DGGGRLTAP 750
           H  P+   G   A A H  +    AQ   +   ++ ++++R++ A      +G GR T P
Sbjct: 330 HGPPNGQPGPQAAAAQHAAQQQAAAQAQAQAAAQQQQQQQREQEAAAAAQRNGAGRATTP 389

Query: 749 PDALLGRQQEP 717
             ++L   Q+P
Sbjct: 390 GSSMLATHQDP 400

>P54282:CAC1A_RAT Voltage-dependent P/Q-type calcium channel subunit alpha-1A - Rattus|
            norvegicus (Rat)
          Length = 2212

 Score = 32.3 bits (72), Expect = 5.2
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
 Frame = -1

Query: 902  PHPNVGDVPAGAVHPGRDGGHAQRAGRHEP----ERSREKRRQRHADGGG--------RL 759
            P P     PA A     D G  +R  RH P    +R R  RR++ + G G          
Sbjct: 945  PRPRDATRPARAADGEGDDGERKRRHRHGPPAHDDRERRHRRRKESQGSGVPMSGPNLST 1004

Query: 758  TAPPDALLGRQQEP 717
            T P    LGRQ  P
Sbjct: 1005 TRPIQQDLGRQDLP 1018

>Q9BGL2:LRAT_BOVIN Lecithin retinol acyltransferase - Bos taurus (Bovine)|
          Length = 230

 Score = 32.0 bits (71), Expect = 6.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 615 DAVVHRAMYLLQNGFGSYDVFENNCEDFALYCKTGLLLPPE 737
           + V  RA  LL  G   Y +  NNCE F  YC+ G  + P+
Sbjct: 139 EEVAQRAEKLL--GITPYSLLWNNCEHFVTYCRYGTPISPQ 177

>Q8TE04:PANK1_HUMAN Pantothenate kinase 1 - Homo sapiens (Human)|
          Length = 598

 Score = 31.6 bits (70), Expect = 8.8
 Identities = 23/61 (37%), Positives = 28/61 (45%)
 Frame = -1

Query: 896 PNVGDVPAGAVHPGRDGGHAQRAGRHEPERSREKRRQRHADGGGRLTAPPDALLGRQQEP 717
           P  G + AGAV P R G  A+  G  E     E+RR RH        AP   LL R+ + 
Sbjct: 57  PGAGVLQAGAVGPARGGQGAEEVG--ESAGGGEERRVRHPQ------APALRLLNRKPQG 108

Query: 716 G 714
           G
Sbjct: 109 G 109


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 215,997,795
Number of extensions: 4652864
Number of successful extensions: 16329
Number of sequences better than 10.0: 23
Number of HSP's gapped: 16287
Number of HSP's successfully gapped: 24
Length of query: 486
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 369
Effective length of database: 68,593,924
Effective search space: 25311157956
Effective search space used: 25311157956
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)