>Q5NCF2:TPPC1_MOUSE Trafficking protein particle complex subunit 1 - Mus musculus|
           (Mouse)
          Length = 145
 Score =  125 bits (314), Expect = 2e-28
 Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
 Frame = +3

Query: 177 IYVFNRNGVCLLYREWHRPLRT-LARNQDQKLMFGLLFSLRSFTAKIDPTSTEHANLGAP 353
           +Y+F+RNGVCL Y EWHR  +  + + ++ KLM+G+LFS+RSF +K+ P   +       
Sbjct: 6   LYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG----- 60

Query: 354 LLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKN 530
                   F SF+T+ YKL+Y E+P+GIK+++ T    G  RD L HIYS LYVE+VVKN
Sbjct: 61  --------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKN 112

Query: 531 PLYAPGSPIKCDLFNKHLDQYVKTL 605
           PL   G  ++ +LF   LD YV++L
Sbjct: 113 PLCPLGQTVQSELFRSRLDSYVRSL 137

>Q9Y5R8:TPPC1_HUMAN Trafficking protein particle complex subunit 1 - Homo sapiens|
           (Human)
          Length = 145

 Score =  122 bits (307), Expect = 1e-27
 Identities = 64/145 (44%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
 Frame = +3

Query: 177 IYVFNRNGVCLLYREWHRPLRT-LARNQDQKLMFGLLFSLRSFTAKIDPTSTEHANLGAP 353
           +Y+F+RNGVCL Y EWHR  +  + + ++ KLM+G+LFS+RSF +K+ P   +       
Sbjct: 6   LYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG----- 60

Query: 354 LLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKN 530
                   F +F+T+ YKL+Y E+P+GIK+++ T    G  RD L HIYS LYVE VVKN
Sbjct: 61  --------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKN 112

Query: 531 PLYAPGSPIKCDLFNKHLDQYVKTL 605
           PL   G  ++ +LF   LD YV++L
Sbjct: 113 PLCPLGQTVQSELFRSRLDSYVRSL 137

>Q17QI1:TPPC1_BOVIN Trafficking protein particle complex subunit 1 - Bos taurus|
           (Bovine)
          Length = 145

 Score =  122 bits (307), Expect = 1e-27
 Identities = 64/145 (44%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
 Frame = +3

Query: 177 IYVFNRNGVCLLYREWHRPLRT-LARNQDQKLMFGLLFSLRSFTAKIDPTSTEHANLGAP 353
           +Y+F+RNGVCL Y EWHR  +  + + ++ KLM+G+LFS+RSF +K+ P   +       
Sbjct: 6   LYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG----- 60

Query: 354 LLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKN 530
                   F +F+T+ YKL+Y E+P+GIK+++ T    G  RD L HIYS LYVE VVKN
Sbjct: 61  --------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKN 112

Query: 531 PLYAPGSPIKCDLFNKHLDQYVKTL 605
           PL   G  ++ +LF   LD YV++L
Sbjct: 113 PLCPLGQTVQSELFRSRLDSYVRSL 137

>Q9UT70:BET5_SCHPO Transport protein particle subunit bet5 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 155

 Score = 81.3 bits (199), Expect = 5e-15
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 19/161 (11%)
 Frame = +3

Query: 180 YVFNRNGVCLLYREW----HRPLRTLARNQDQ--------KLMFGLLFSLRSFTAKIDPT 323
           Y+++R   C+    W       + TL    +Q        KL+FG++FSLR+   KI   
Sbjct: 7   YIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMVKKITAD 66

Query: 324 STEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIY- 500
             +               F S+ T+ YKL++ E+P+ ++LI +T+P+       L+ IY 
Sbjct: 67  QDQ---------------FMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYT 111

Query: 501 SLYVEYVVKNPLYAPGSP------IKCDLFNKHLDQYVKTL 605
           +LYVE+VVK+PLY    P      I C++F   LD++V+TL
Sbjct: 112 TLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTL 152

>Q9ES56:TPPC4_MOUSE Trafficking protein particle complex subunit 4 - Mus musculus|
           (Mouse)
          Length = 219

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 342 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 518
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 519 VVKNPLYAPGSPIKCDLFNKHL 584
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>Q2TBL9:TPPC4_BOVIN Trafficking protein particle complex subunit 4 - Bos taurus|
           (Bovine)
          Length = 219

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 342 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 518
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 519 VVKNPLYAPGSPIKCDLFNKHL 584
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>Q5R9J9:TPPC4_PONPY Trafficking protein particle complex subunit 4 - Pongo pygmaeus|
           (Orangutan)
          Length = 219

 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 342 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 518
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 519 VVKNPLYAPGSPIKCDLFNKHL 584
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>Q9Y296:TPPC4_HUMAN Trafficking protein particle complex subunit 4 - Homo sapiens|
           (Human)
          Length = 219

 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = +3

Query: 342 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 518
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 519 VVKNPLYAPGSPIKCDLFNKHL 584
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>Q03630:BET5_YEAST Transport protein particle 18 kDa subunit - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 159

 Score = 54.3 bits (129), Expect = 6e-07
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
 Frame = +3

Query: 180 YVFNRNGVCLLYREWHRPLRTLARN------------QDQKLMFGLLFSLRSFTAKIDPT 323
           ++F+R+  C+  REW     TLA N            +D KL++G++FSLRS T K+   
Sbjct: 7   WIFDRHCNCIFDREW-----TLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKG 61

Query: 324 STEHANLGAPLLPGQGCSFHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS 503
           S ++                S  T  Y+++   + SG+  +LL+  +       L++IYS
Sbjct: 62  SVKN-------------DIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYS 108

Query: 504 -LYVEYVVKNPL 536
            +YV+YV  N L
Sbjct: 109 HIYVKYVSNNLL 120

>Q03784:TRS23_YEAST Transport protein particle 23 kDa subunit - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 219

 Score = 37.0 bits (84), Expect = 0.099
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = +3

Query: 486 LKHIYSLYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 605
           L+ +Y LY +YV+K+P Y+   PI+ +LF++ + + V+ L
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

>Q9P219:DAPLE_HUMAN Protein Daple - Homo sapiens (Human)|
          Length = 2028

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 274  SDSSSPCAHLPPRSTPPQQNTPILGRHYCQVRDAH 378
            SD +SP A  P RS     +TP LG +  + RDAH
Sbjct: 1440 SDPASPAASQPLRSQAENPDTPALGSNCAEERDAH 1474

>Q9CQP2:TPPC2_MOUSE Trafficking protein particle complex subunit 2 - Mus musculus|
           (Mouse)
          Length = 140

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 390 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 557
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121

Query: 558 KCDLFNK 578
           +   F++
Sbjct: 122 RSSAFDR 128

>Q3T0F2:TPPC2_BOVIN Trafficking protein particle complex subunit 2 - Bos taurus|
           (Bovine)
          Length = 140

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 390 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 557
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121

Query: 558 KCDLFNK 578
           +   F++
Sbjct: 122 RSSAFDR 128

>Q5RES6:TPPC2_PONPY Trafficking protein particle complex subunit 2 - Pongo pygmaeus|
           (Orangutan)
          Length = 140

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 390 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 557
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121

Query: 558 KCDLFNK 578
           +   F++
Sbjct: 122 RSSAFDR 128

>O14582:TPPC2_HUMAN Trafficking protein particle complex subunit 2 - Homo sapiens|
           (Human)
          Length = 140

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +3

Query: 390 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 557
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDIR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121

Query: 558 KCDLFNK 578
           +   F++
Sbjct: 122 RSSAFDR 128

>Q7USC2:RECO_RHOBA DNA repair protein recO - Rhodopirellula baltica|
          Length = 270

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 36/108 (33%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = +2

Query: 50  RSARLGSCYAVLQRVVADVCRAGVQSRTGSASWDWNGLQRPGDLRLQPQXXXXXXXXXXX 229
           RS R  S   V   VV + CR   QS   +ASWD   L    +L  +P+           
Sbjct: 158 RSRRRASFSLVGGGVVCENCRPS-QSHLMTASWD--ALDALRELASEPELPPSTIDADTD 214

Query: 230 XTPHARSQPGPEAYVRTPLLPAL---IYRQDRPHLNRTRQSWGATTAR 364
                 SQP   A+    L PA+   IYR  R  LNRT +S    T R
Sbjct: 215 NP----SQPPSTAFPIGRLFPAMTPAIYRDLRGLLNRTLESLVGQTPR 258

>Q5UQS5:YR328_MIMIV Uncharacterized protein R328 - Mimivirus|
          Length = 343

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -1

Query: 767 EATNFSTNSIIKPNNIEITPHTKLFHGPGF--PKT*SANVLR**ACTSSRA*MGSNQCFH 594
           E TN STN I+   NI+ T  TKL     F  PK       +    T+ ++   SN+ F 
Sbjct: 138 ETTNKSTNKILDKLNIKTTSFTKLNKSTKFNNPKITKTIPNKSNGKTTKKSTKNSNEIFK 197

Query: 593 ILIEMFIEKVTLDW 552
            LI+  +  V   W
Sbjct: 198 ELIKKQLPDVPAQW 211

>Q5M8X5:TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein -|
           Xenopus tropicalis (Western clawed frog) (Silurana
           tropicalis)
          Length = 139

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +3

Query: 387 FKTNTYKLNYMESPSGIKLILL-----THPRTGDQRDALKHIYSLYVEYVVKNPLYAPGS 551
           + T  YK+    + S +K +++     T  R  + R   + +++ Y + V+ NP Y PG 
Sbjct: 62  YPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTD-VMCNPFYNPGD 120

Query: 552 PIKCDLFN 575
           PI+   F+
Sbjct: 121 PIQSRAFD 128


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 153,787,452
Number of extensions: 3390812
Number of successful extensions: 8498
Number of sequences better than 10.0: 18
Number of HSP's gapped: 8483
Number of HSP's successfully gapped: 18
Length of query: 283
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 171
Effective length of database: 69,965,399
Effective search space: 11964083229
Effective search space used: 11964083229
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)