ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf102l03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT833586.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122O19, full insert sequence Length = 1165 Score = 117 bits (59), Expect = 7e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 520 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 579 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| |||||| |||||||||||||||||||||||| Sbjct: 580 aacgtgaggaaccttgaaggcggctacctctccttgctc 618 Score = 107 bits (54), Expect = 7e-20 Identities = 153/186 (82%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| | ||| Sbjct: 145 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctagac 204 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| ||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||| Sbjct: 205 gtgaggatgtgggaggacttcgacaagggccacgtcgccggcgcccgcaacgtgccctac 264 Query: 246 tacctctccgtcacgccccatggcaaggagcgcaacccggacttcgtcgatcaggttgcg 305 ||||||||||| ||||| | | ||||||| |||||| |||||||| | ||||| || Sbjct: 265 tacctctccgtgacgccgcgcgccaaggagaagaacccgcacttcgtccagcaggtggcc 324 Query: 306 gcgctc 311 |||||| Sbjct: 325 gcgctc 330
>emb|CT833585.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110F23, full insert sequence Length = 1004 Score = 117 bits (59), Expect = 7e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 359 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 418 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| |||||| |||||||||||||||||||||||| Sbjct: 419 aacgtgaggaaccttgaaggcggctacctctccttgctc 457 Score = 107 bits (54), Expect = 7e-20 Identities = 153/186 (82%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| | ||| Sbjct: 143 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctagac 202 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| ||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||||| Sbjct: 203 gtgaggatgtgggaggacttcgacaagggccacgtcgccggcgcccgcaacgtgccctac 262 Query: 246 tacctctccgtcacgccccatggcaaggagcgcaacccggacttcgtcgatcaggttgcg 305 ||||||||||| ||||| | | ||||||| |||||| |||||||| | ||||| || Sbjct: 263 tacctctccgtgacgccgcgcgccaaggagaagaacccgcacttcgtccagcaggtggcc 322 Query: 306 gcgctc 311 |||||| Sbjct: 323 gcgctc 328
>ref|NM_001073199.1| Oryza sativa (japonica cultivar-group) Os12g0428000 (Os12g0428000) mRNA, partial cds Length = 1413 Score = 109 bits (55), Expect = 2e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 370 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 429 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 430 aacgtgaggatccttgaaggcggctacctctccttgctc 468 Score = 105 bits (53), Expect = 3e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 154 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 213 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 214 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 273 Query: 246 tacctctccgtcacgcc 262 ||||||||||| ||||| Sbjct: 274 tacctctccgtgacgcc 290
>dbj|AK100244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056E18, full insert sequence Length = 1030 Score = 109 bits (55), Expect = 2e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 370 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 429 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 430 aacgtgaggatccttgaaggcggctacctctccttgctc 468 Score = 105 bits (53), Expect = 3e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 154 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 213 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 214 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 273 Query: 246 tacctctccgtcacgcc 262 ||||||||||| ||||| Sbjct: 274 tacctctccgtgacgcc 290
>dbj|AK063419.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C02, full insert sequence Length = 1413 Score = 109 bits (55), Expect = 2e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 |||||||| || |||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct: 370 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgcgggattcaag 429 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 430 aacgtgaggatccttgaaggcggctacctctccttgctc 468 Score = 105 bits (53), Expect = 3e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 154 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 213 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 214 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 273 Query: 246 tacctctccgtcacgcc 262 ||||||||||| ||||| Sbjct: 274 tacctctccgtgacgcc 290
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 105 bits (53), Expect = 3e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 13701575 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 13701634 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 13701635 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 13701694 Query: 246 tacctctccgtcacgcc 262 ||||||||||| ||||| Sbjct: 13701695 tacctctccgtgacgcc 13701711 Score = 67.9 bits (34), Expect = 6e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 391 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 13701931 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 13701980 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Plus Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 13702074 aacgtgaggatccttgaaggcggctacctctccttgctc 13702112
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 105 bits (53), Expect = 3e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 35176 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 35235 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 35236 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 35295 Query: 246 tacctctccgtcacgcc 262 ||||||||||| ||||| Sbjct: 35296 tacctctccgtgacgcc 35312 Score = 67.9 bits (34), Expect = 6e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 391 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 35532 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 35581 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Plus Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 35675 aacgtgaggatccttgaaggcggctacctctccttgctc 35713
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 105 bits (53), Expect = 3e-19 Identities = 116/137 (84%) Strand = Plus / Plus Query: 126 agcgtggacgcggaggcggcgtgcgcactgctggccttggagcagtacgggtacgtggac 185 |||||||||||||||| ||||||||| |||||| || || | | || ||| ||||| Sbjct: 17228 agcgtggacgcggaggaggcgtgcgcgctgctgagctcggggaggcaccaatacctggac 17287 Query: 186 gtgcggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctac 245 ||| |||||||||||||||| || ||||| ||||| ||||| || ||||||||||||||| Sbjct: 17288 gtgaggatgtgggaggactttgacaagggccacgtcgccggcgcccgcaacgtgccctac 17347 Query: 246 tacctctccgtcacgcc 262 ||||||||||| ||||| Sbjct: 17348 tacctctccgtgacgcc 17364 Score = 67.9 bits (34), Expect = 6e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgc 391 |||||||| || |||||||||| ||||||||| ||||||||||||||||| Sbjct: 17584 tgccgctccggcgtccggtccaagctcgccacggcagaccttgtcgccgc 17633 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Plus Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| || ||| |||||||||||||||||||||||| Sbjct: 17727 aacgtgaggatccttgaaggcggctacctctccttgctc 17765
>gb|DQ244446.1| Zea mays clone 7629 mRNA sequence Length = 718 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 190 ggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctactacc 249 ||||||||||||| || || ||||| || || |||||||| || || || |||||||||| Sbjct: 101 ggatgtgggaggattttgacaagggccatgtcgccggtgctcggaatgttccctactacc 160 Query: 250 tctccgtcacgccccatggcaaggag 275 |||||||||| || ||||| |||||| Sbjct: 161 tctccgtcactccgcatgggaaggag 186 Score = 54.0 bits (27), Expect = 0.001 Identities = 81/99 (81%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 ||||||||||| ||||||||| |||||||| |||||||| || ||| || ||| | Sbjct: 253 tgccgctctggcatccggtccaaactcgccactgcagacctcatcaacgcgggcttcacc 312 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| |||||| ||||||| ||||| ||||||||| Sbjct: 313 aacgtgaggaacctacaaggcggatacctttccttgctc 351
>gb|DQ244429.1| Zea mays clone 7493 mRNA sequence Length = 719 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 190 ggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctactacc 249 ||||||||||||| || || ||||| || || |||||||| || || || |||||||||| Sbjct: 101 ggatgtgggaggattttgacaagggccatgtcgccggtgctcggaatgttccctactacc 160 Query: 250 tctccgtcacgccccatggcaaggag 275 |||||||||| || ||||| |||||| Sbjct: 161 tctccgtcactccgcatgggaaggag 186 Score = 54.0 bits (27), Expect = 0.001 Identities = 81/99 (81%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 ||||||||||| ||||||||| |||||||| |||||||| || ||| || ||| | Sbjct: 253 tgccgctctggcatccggtccaaactcgccactgcagacctcatcaacgcgggcttcacc 312 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| |||||| ||||||| ||||| ||||||||| Sbjct: 313 aacgtgaggaacctacaaggcggatacctttccttgctc 351
>gb|AY107459.1| Zea mays PCO099192 mRNA sequence Length = 709 Score = 67.9 bits (34), Expect = 6e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 190 ggatgtgggaggacttcgaaaagggtcacgttgccggtgcacgcaacgtgccctactacc 249 ||||||||||||| || || ||||| || || |||||||| || || || |||||||||| Sbjct: 91 ggatgtgggaggattttgacaagggccatgtcgccggtgctcggaatgttccctactacc 150 Query: 250 tctccgtcacgccccatggcaaggag 275 |||||||||| || ||||| |||||| Sbjct: 151 tctccgtcactccgcatgggaaggag 176 Score = 61.9 bits (31), Expect = 4e-06 Identities = 82/99 (82%) Strand = Plus / Plus Query: 342 tgccgctctggggtccggtccaggctcgccaccgcagaccttgtcgccgctggattcgca 401 ||||||||||| ||||||||| |||||||| |||||||| ||| ||| || ||| | Sbjct: 243 tgccgctctggcatccggtccaaactcgccactgcagacctcgtcaacgcgggcttcacc 302 Query: 402 aacgtgaagaacctcgaaggcggctacctctccttgctc 440 ||||||| |||||| ||||||| ||||| ||||||||| Sbjct: 303 aacgtgaggaacctacaaggcggatacctttccttgctc 341
>gb|AC145799.3| Xenopus tropicalis clone CH216-55B16, complete sequence Length = 163650 Score = 44.1 bits (22), Expect = 0.87 Identities = 22/22 (100%) Strand = Plus / Minus Query: 789 aaagcattatgtatgtaggtac 810 |||||||||||||||||||||| Sbjct: 818 aaagcattatgtatgtaggtac 797 Score = 44.1 bits (22), Expect = 0.87 Identities = 22/22 (100%) Strand = Plus / Minus Query: 644 aaagcattatgtatgtaggtac 665 |||||||||||||||||||||| Sbjct: 818 aaagcattatgtatgtaggtac 797
>gb|AF203649.1| Myotis myotis microsatellite D9 sequence Length = 468 Score = 44.1 bits (22), Expect = 0.87 Identities = 25/26 (96%) Strand = Plus / Plus Query: 57 ctttcctccccggtgctcaatcctcc 82 ||||||||||| |||||||||||||| Sbjct: 229 ctttcctcccctgtgctcaatcctcc 254
>gb|AC149325.2| Phakopsora pachyrhizi clone JGIAFNA-13C13, complete sequence Length = 36989 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 844 ttcaagaaataaaaatgtgtg 864 ||||||||||||||||||||| Sbjct: 11506 ttcaagaaataaaaatgtgtg 11526
>gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182247 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 844 ttcaagaaataaaaatgtgtg 864 ||||||||||||||||||||| Sbjct: 158231 ttcaagaaataaaaatgtgtg 158251
>gb|AC097497.2| Homo sapiens BAC clone RP11-324J17 from 4, complete sequence Length = 195069 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 839 caattttcaagaaataaaaat 859 ||||||||||||||||||||| Sbjct: 71771 caattttcaagaaataaaaat 71751
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 gcgtggacgcggaggcggcgt 147 ||||||||||||||||||||| Sbjct: 279208 gcgtggacgcggaggcggcgt 279188
>gb|U19858.1|SAU19858 Streptomyces antibioticus guanosine pentaphosphate synthetase (gpsI) gene, complete cds Length = 2838 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 gcgtggacgcggaggcggcgt 147 ||||||||||||||||||||| Sbjct: 866 gcgtggacgcggaggcggcgt 846 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 132,621,708 Number of extensions: 7275415 Number of successful extensions: 148352 Number of sequences better than 10.0: 18 Number of HSP's gapped: 148352 Number of HSP's successfully gapped: 41 Length of query: 917 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 894 Effective length of database: 18,503,978,556 Effective search space: 16542556829064 Effective search space used: 16542556829064 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
