ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf102k03 |
|---|---|
| Clone Library Name | barley_pub |
>Q8IVV7:CQ039_HUMAN Uncharacterized protein C17orf39 - Homo sapiens (Human)| Length = 300 Score = 33.5 bits (75), Expect = 1.2 Identities = 26/85 (30%), Positives = 33/85 (38%) Frame = -3 Query: 421 ARLHMRRCEAGAQCPSTRSSLPLTVAARVALFLPPLISSLDPTTYCILSLRSRASLFITF 242 +R H R G P+T L AA V L LPP ++ DP A Sbjct: 43 SRPHPARARPGLSLPATL--LGSRAAAAVPLPLPPALAPGDPAMPVRTECPPPAGASAAS 100 Query: 241 TARVAPPPPMLTSSLDLVASCLLVG 167 A + PPPP+ T + S L G Sbjct: 101 AASLIPPPPINTQQPGVATSLLYSG 125
>P20128:POLR_TYMVA RNA replicase polyprotein - Turnip yellow mosaic virus (isolate| Australia) Length = 1844 Score = 33.1 bits (74), Expect = 1.6 Identities = 35/105 (33%), Positives = 42/105 (40%) Frame = -3 Query: 511 SPTSVVLHHDFVTGSPLHNGLPRLRRHHPWARLHMRRCEAGAQCPSTRSSLPLTVAARVA 332 S +SV+LH F SP P L+ H H+ Q T S+P T A Sbjct: 525 SESSVLLHKLF---SP-----PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTA---- 572 Query: 331 LFLPPLISSLDPTTYCILSLRSRASLFITFTARVAPPPPMLTSSL 197 FLP PTT S ASL F + P PP + SSL Sbjct: 573 -FLP-----FTPTTSTAPPDHSEASLPPAFASTSVPRPPPVASSL 611
>P28477:POLR_TYMVC RNA replicase polyprotein - Turnip yellow mosaic virus (isolate| TYMC) Length = 1844 Score = 32.7 bits (73), Expect = 2.1 Identities = 34/104 (32%), Positives = 41/104 (39%) Frame = -3 Query: 511 SPTSVVLHHDFVTGSPLHNGLPRLRRHHPWARLHMRRCEAGAQCPSTRSSLPLTVAARVA 332 S +S++LH F SP P L+ H H+ Q T S+P T A Sbjct: 525 SESSILLHKLF---SP-----PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTA---- 572 Query: 331 LFLPPLISSLDPTTYCILSLRSRASLFITFTARVAPPPPMLTSS 200 FLP PTT RS ASL F + P PP SS Sbjct: 573 -FLP-----FTPTTSTAPPDRSEASLPPAFASTFVPRPPPAASS 610
>P10358:POLR_TYMV RNA replicase polyprotein - Turnip yellow mosaic virus| Length = 1844 Score = 32.7 bits (73), Expect = 2.1 Identities = 34/104 (32%), Positives = 41/104 (39%) Frame = -3 Query: 511 SPTSVVLHHDFVTGSPLHNGLPRLRRHHPWARLHMRRCEAGAQCPSTRSSLPLTVAARVA 332 S +S++LH F SP P L+ H H+ Q T S+P T A Sbjct: 525 SESSILLHKLF---SP-----PTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTA---- 572 Query: 331 LFLPPLISSLDPTTYCILSLRSRASLFITFTARVAPPPPMLTSS 200 FLP PTT RS ASL F + P PP SS Sbjct: 573 -FLP-----FTPTTSTAPPDRSEASLPPAFASTFVPRPPPAASS 610
>O13765:DBR1_SCHPO Lariat debranching enzyme - Schizosaccharomyces pombe (Fission| yeast) Length = 466 Score = 31.6 bits (70), Expect = 4.6 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 520 SVASPTSVVLHHDFVTGSPLHNGLPRLRRHHPWARLHMRRCEAGA 386 S+ P + L HD+ G H + +L RH P+ R + R + G+ Sbjct: 172 SLQKPIDIFLSHDWPRGIEQHGDVAKLLRHKPFFRNEVERNDLGS 216
>Q5VW22:CTLF3_HUMAN Centaurin-gamma-like family member 3 - Homo sapiens (Human)| Length = 663 Score = 26.9 bits (58), Expect(2) = 8.2 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -1 Query: 588 GETSVSSKETQEAGRRW-GARWKHRWRAQPRSCYTMILSLDLLSITA 451 G+T S K T+E RW ++++ + P C + L LL TA Sbjct: 527 GQTKPSEKSTREEKERWIRSKYEEKLFLAPLPCTELSLGQQLLRATA 573 Score = 22.3 bits (46), Expect(2) = 8.2 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -2 Query: 662 MDSIVTTPLKSIRKGRKEGKTQPT 591 M SIV SI +G +G+T+P+ Sbjct: 509 MSSIVNDLANSIWEGSSQGQTKPS 532 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 163,067,689 Number of extensions: 3628726 Number of successful extensions: 9832 Number of sequences better than 10.0: 6 Number of HSP's gapped: 9824 Number of HSP's successfully gapped: 7 Length of query: 303 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 190 Effective length of database: 69,691,104 Effective search space: 13241309760 Effective search space used: 13241309760 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
