ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf102j14 |
|---|---|
| Clone Library Name | barley_pub |
>Q9FJA6:RS33_ARATH 40S ribosomal protein S3-3 - Arabidopsis thaliana (Mouse-ear cress)| Length = 248 Score = 386 bits (992), Expect = e-107 Identities = 191/222 (86%), Positives = 204/222 (91%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA QISKKRKFVADGVF AELNE+LTREL EDG++GVE+RVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELTS+VQKRF FP VELYAEKV NRGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG P +YID AVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 VLG+KVKIMLDWDPKGKQGP TPLPD+V IH PK+DD ++ P Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAP 222
>Q9SIP7:RS31_ARATH 40S ribosomal protein S3-1 - Arabidopsis thaliana (Mouse-ear cress)| Length = 250 Score = 377 bits (969), Expect = e-104 Identities = 190/222 (85%), Positives = 200/222 (90%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA QISKKRKFVADGVF AELNE+LTREL EDG++GVE+RVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELTS+VQKRF FP VELYAEKV NRGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG P +YID AVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 VLGIKVKIMLDWDP GK GP TPLPD+V IH PKDD + P Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222
>Q9M339:RS32_ARATH 40S ribosomal protein S3-2 - Arabidopsis thaliana (Mouse-ear cress)| Length = 249 Score = 373 bits (958), Expect = e-103 Identities = 186/222 (83%), Positives = 199/222 (89%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 M QISKKRKFVADGVF AELNE+LTREL EDG++GVE+RVTPMRTEIIIRATRTQNVLG Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELTS+VQKRF FP VELYAEKV NRGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSG P +YID AVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 VLGIKVK+MLDWDPKG GP TPLPD+V IH PK+++ P Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222
>P62909:RS3_RAT 40S ribosomal protein S3 - Rattus norvegicus (Rat)| Length = 243 Score = 356 bits (913), Expect = 9e-98 Identities = 179/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>P62908:RS3_MOUSE 40S ribosomal protein S3 - Mus musculus (Mouse)| Length = 243 Score = 356 bits (913), Expect = 9e-98 Identities = 179/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>P02350:RS31_XENLA 40S ribosomal protein S3-A - Xenopus laevis (African clawed frog)| Length = 246 Score = 356 bits (913), Expect = 9e-98 Identities = 179/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>Q0Z8U2:RS3_PIG 40S ribosomal protein S3 - Sus scrofa (Pig)| Length = 243 Score = 355 bits (912), Expect = 1e-97 Identities = 179/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>P23396:RS3_HUMAN 40S ribosomal protein S3 - Homo sapiens (Human)| Length = 243 Score = 355 bits (912), Expect = 1e-97 Identities = 179/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>Q3T169:RS3_BOVIN 40S ribosomal protein S3 - Bos taurus (Bovine)| Length = 243 Score = 355 bits (912), Expect = 1e-97 Identities = 179/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>P79891:RS3_AMBME 40S ribosomal protein S3 - Ambystoma mexicanum (Axolotl)| Length = 253 Score = 354 bits (909), Expect = 3e-97 Identities = 178/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESG+KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216
>Q5R465:RS3_PONPY 40S ribosomal protein S3 - Pongo pygmaeus (Orangutan)| Length = 243 Score = 354 bits (908), Expect = 3e-97 Identities = 178/216 (82%), Positives = 192/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAE+V RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>P47835:RS32_XENLA 40S ribosomal protein S3-B - Xenopus laevis (African clawed frog)| Length = 246 Score = 352 bits (904), Expect = 1e-96 Identities = 177/216 (81%), Positives = 191/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA Q+SKKRKFVADG+F AELNE LTREL EDG++GVE+RVTP +TEIII ATRTQNVLG Sbjct: 1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP+G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PKD+ Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>Q90YS2:RS3_ICTPU 40S ribosomal protein S3 - Ictalurus punctatus (Channel catfish)| Length = 245 Score = 352 bits (902), Expect = 2e-96 Identities = 177/216 (81%), Positives = 191/216 (88%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 MA+QISKKRKFV+DG+F AELNE LTREL EDG++GVE+RVTP RTEIII ATRTQNVLG Sbjct: 1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 EKGRRIRELT+VVQKRF FP G VELYAEKV RGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D AVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 VLGIKVKIML WDP GK GP PLPD V+I PK++ Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216
>P48153:RS3_MANSE 40S ribosomal protein S3 - Manduca sexta (Tobacco hawkmoth)| (Tobacco hornworm) Length = 243 Score = 334 bits (856), Expect = 4e-91 Identities = 167/218 (76%), Positives = 184/218 (84%) Frame = +2 Query: 80 ISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGR 259 ISKKRKFV DGVF AELNE LTREL EDG++GVE+RVTP R+EIII ATRTQ+VLGEKGR Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGR 65 Query: 260 RIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLR 439 RIRELTSVVQKRFN P+ VELYAEKV RGLCA+AQAESLRYKL+GGLAVRRACYGVLR Sbjct: 66 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 125 Query: 440 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y++ A RHVLLRQGVLGI Sbjct: 126 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 185 Query: 620 KVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 KVKIML WD +GK GP P PD + + PKD+ L P Sbjct: 186 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEP 223
>Q06559:RS3_DROME 40S ribosomal protein S3 - Drosophila melanogaster (Fruit fly)| Length = 246 Score = 330 bits (846), Expect = 5e-90 Identities = 165/223 (73%), Positives = 187/223 (83%) Frame = +2 Query: 65 NMALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVL 244 N L ISKKRKFV+DG+F AELNE LTREL EDG++GVE+RVTP RTEIII AT+TQ VL Sbjct: 2 NANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVL 61 Query: 245 GEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRAC 424 GEKGRRIRELT++VQKRFNF G +ELYAEKV RGLCA+AQAESLRYKL GGLAVRRAC Sbjct: 62 GEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRAC 121 Query: 425 YGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQ 604 YGVLR++MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG P N Y++ A RHVLLRQ Sbjct: 122 YGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQ 181 Query: 605 GVLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 GVLGIKVK+ML +DPK K GP PLPD V++ PK++ + P Sbjct: 182 GVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP 224
>P48152:RS3_CAEEL 40S ribosomal protein S3 - Caenorhabditis elegans| Length = 247 Score = 308 bits (790), Expect = 2e-83 Identities = 154/212 (72%), Positives = 177/212 (83%) Frame = +2 Query: 80 ISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGR 259 ++KK+K V G+F AELN L +EL EDG++GVE+R TP R E+II ATRTQNVLGE+GR Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66 Query: 260 RIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLR 439 RI+ELTSVVQKRF F +G VELYAEKV NRGLCAVAQ ESLRYKL+GGLAVRRACYGVLR Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLR 126 Query: 440 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 F+MESGA+G EVIVSGKLR QRAK+MKF DG MI SGHPVN YI AVRHV LRQGV+GI Sbjct: 127 FIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGI 186 Query: 620 KVKIMLDWDPKGKQGPATPLPDLVTIHPPKDD 715 KVKIML +DP+G+ GP LPD V I P+++ Sbjct: 187 KVKIMLPYDPRGQNGPRNALPDHVQIVEPQEE 218
>O60128:RS3_SCHPO 40S ribosomal protein S3 - Schizosaccharomyces pombe (Fission| yeast) Length = 249 Score = 305 bits (781), Expect = 2e-82 Identities = 157/221 (71%), Positives = 182/221 (82%) Frame = +2 Query: 71 ALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGE 250 A ISKKRKFVADGVF AELNE TREL E+G++G E+RVTP R+EIIIRAT TQ+VLGE Sbjct: 4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63 Query: 251 KGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYG 430 KGRRIRELT++VQKRF F + VELYAEKV NRGLCAVAQ ESLRYKLL GLAVRRA YG Sbjct: 64 KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 123 Query: 431 VLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGV 610 VLR+VME+GAKGCEV++SGKLRA RAKSMKF DG+MI SG P +ID A RHVLLRQGV Sbjct: 124 VLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGV 183 Query: 611 LGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 LG+KVKIML +PK +Q + LPD+V + PK+++ +P Sbjct: 184 LGVKVKIMLP-EPKTRQKKS--LPDIVVVLDPKEEEPITKP 221
>P05750:RS3_YEAST 40S ribosomal protein S3 - Saccharomyces cerevisiae (Baker's yeast)| Length = 240 Score = 293 bits (750), Expect = 7e-79 Identities = 151/222 (68%), Positives = 179/222 (80%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLG 247 M ISKKRK VADGVF AELNE TREL E+G++GVE+RVTP +TE+IIRATRTQ+VLG Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60 Query: 248 EKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACY 427 E GRRI ELT +VQKRF + G + LYAE+V +RGL AVAQAES+++KLL GLA+RRA Y Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120 Query: 428 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQG 607 GV+R+VMESGAKGCEV+VSGKLRA RAK+MKF DG++I SG PVN +ID A RHVL+RQG Sbjct: 121 GVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQG 180 Query: 608 VLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRP 733 VLGIKVKIM D K + GP LPD VTI PK+++ L P Sbjct: 181 VLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAP 220
>Q8SQM3:RS3_ENCCU 40S ribosomal protein S3 - Encephalitozoon cuniculi| Length = 228 Score = 172 bits (437), Expect = 1e-42 Identities = 90/217 (41%), Positives = 136/217 (62%), Gaps = 3/217 (1%) Frame = +2 Query: 71 ALQISKKR---KFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNV 241 AL++S + +F+ +G+ AEL E + L +GF+ +E+R+ +II++ + Sbjct: 10 ALEMSSDQVLERFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEA 69 Query: 242 LGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRA 421 +GEK R+R+ + +R PD VE+ EKV +GLCA+ QA +R K+LGG+ RRA Sbjct: 70 IGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRA 129 Query: 422 CYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLR 601 L+ + A+GC++IVSGKL+ QRAKS+KF+DG +I SG V YI+ V + Sbjct: 130 VNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETK 189 Query: 602 QGVLGIKVKIMLDWDPKGKQGPATPLPDLVTIHPPKD 712 QGV+GI+V+IML +DP+G GP PLPD +TI P + Sbjct: 190 QGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>Q8U004:RS3_PYRFU 30S ribosomal protein S3P - Pyrococcus furiosus| Length = 210 Score = 131 bits (330), Expect = 4e-30 Identities = 76/203 (37%), Positives = 115/203 (56%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +R F+ + V ++E L +EL G+ G++I+ TP+ T++II A V+G GRRIR Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 ELT +++K+F + +E+ E++ N L A QA L L G+ RRA Y LR +M Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA+G E+ +SGKL +RAKS++F GY+ G+P + LL+ GV+G+KV Sbjct: 122 NNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTI 697 IM P LPD + I Sbjct: 182 IM---------PPGARLPDEIEI 195
>Q5JDH5:RS3_PYRKO 30S ribosomal protein S3P - Pyrococcus kodakaraensis (Thermococcus| kodakaraensis) Length = 209 Score = 129 bits (323), Expect = 2e-29 Identities = 74/203 (36%), Positives = 114/203 (56%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +R F+ +GV ++E L +EL G+ G++I+ TP+ T++ I A V+G GRRIR Sbjct: 4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 ELT +++K+F + +E+ E++ N L A QA L L G+ RRA Y +R +M Sbjct: 64 ELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA+G E+ +SGKL +RAKS++F GY+ G+P + L+ GV+G+KV Sbjct: 122 RNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVS 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTI 697 IM P LPD + I Sbjct: 182 IM---------PPDAKLPDEIEI 195
>Q9V1U1:RS3_PYRAB 30S ribosomal protein S3P - Pyrococcus abyssi| Length = 210 Score = 126 bits (317), Expect = 1e-28 Identities = 71/203 (34%), Positives = 115/203 (56%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +R F+ + V ++E L +EL G+ G++I+ TP+ T++II A V+G GRRIR Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 ELT +++++F + +++ +++ N L A QA + L G+ RRA Y +R +M Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA+G E+ +SGKL +RAKS++F GY+ G+P + LL+ GV+G+KV Sbjct: 122 SNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTI 697 IM P LPD + I Sbjct: 182 IM---------PPDARLPDEIEI 195
>O59424:RS3_PYRHO 30S ribosomal protein S3P - Pyrococcus horikoshii| Length = 210 Score = 126 bits (316), Expect = 1e-28 Identities = 72/211 (34%), Positives = 118/211 (55%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +R F+ + V ++E L +EL G+ G++I+ TP+ T++II A V+G GRRIR Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 ELT +++++F + +++ +++ N L A QA + L G+ RRA Y +R +M Sbjct: 64 ELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA+G E+ +SGKL +RAKS++F GY+ G+P + LL+ GV+G+KV Sbjct: 122 NNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVA 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 IM P LPD + I ++E Sbjct: 182 IM---------PPDARLPDEIEIVEKPAEEE 203
>Q46GA1:RS3_METBF 30S ribosomal protein S3P - Methanosarcina barkeri (strain Fusaro /| DSM 804) Length = 311 Score = 124 bits (310), Expect = 7e-28 Identities = 74/208 (35%), Positives = 113/208 (54%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +RKFV DG A ++E +L G+ G+E+ TPM T+I+I + + V+G+ G+ IR Sbjct: 4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +LT V R+N + ++ A++V L A A L + G R+A + LR VM Sbjct: 64 KLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA GCEV++SGKL R++ KF DGY+ SG+PV++ +D + + G LG KV+ Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVR 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKD 712 I+ P LPD T P + Sbjct: 182 II---------QPGVVLPDSYTTTEPSE 200
>Q8PV44:RS3_METMA 30S ribosomal protein S3P - Methanosarcina mazei (Methanosarcina| frisia) Length = 307 Score = 121 bits (303), Expect = 5e-27 Identities = 72/211 (34%), Positives = 113/211 (53%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KFV DG A ++E +L G+ G+E+ TPM T+III + + V+G+ G+ IR Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +LT V ++N + ++ A++V L A A L + G R+A + +R VM Sbjct: 64 KLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA GCEV++SGKL R++ KF DGY+ SGHPV + +D + + G LG KV+ Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVR 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 I+ P LPD + + +E Sbjct: 182 II---------QPGVVLPDSYKVRESVEIEE 203
>P20281:RS3_HALMA 30S ribosomal protein S3P - Haloarcula marismortui (Halobacterium| marismortui) Length = 304 Score = 119 bits (297), Expect = 2e-26 Identities = 65/216 (30%), Positives = 123/216 (56%) Frame = +2 Query: 80 ISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGR 259 ++ +++F+ DG+ +++E ELG G+ G+++ TPM T+I+++A + V+G+ G+ Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60 Query: 260 RIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLR 439 IR++T+ ++ RFN D V++ ++V L A A+ L L G R+A + + Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118 Query: 440 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 +MESGA G E+++SGK+ R++ KF GY+ +G P + +D V +++ G +G+ Sbjct: 119 RIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGV 178 Query: 620 KVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFL 727 +VKI+ P LPD I+ D ++++ Sbjct: 179 RVKII---------PPNAELPDDFEIYEDVDVEDYV 205
>Q8TRU1:RS3_METAC 30S ribosomal protein S3P - Methanosarcina acetivorans| Length = 318 Score = 117 bits (292), Expect = 9e-26 Identities = 70/211 (33%), Positives = 113/211 (53%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KFV DG A ++E +L G+ G+E+ TPM T+I+I + + V+G+ G+ IR Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +LT V +++ + ++ A++V L A A L + G R+A + LR VM Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA GCEV++SGKL R++ KF DGY+ SG+PV + +D + + G LG KV+ Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVR 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 I+ P LPD + + +E Sbjct: 182 II---------QPGVVLPDSYKVRESVEVEE 203
>Q8TX35:RS3_METKA 30S ribosomal protein S3P - Methanopyrus kandleri| Length = 227 Score = 116 bits (290), Expect = 2e-25 Identities = 73/215 (33%), Positives = 113/215 (52%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 +KFV G+ EL+E L ELG G+ G+ ++ P T+II R +G +GR IR Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRR 71 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 + VQ+RF G V + +++ + L A L L G+ RRA YG LR +M Sbjct: 72 VEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMN 130 Query: 452 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +GAKG +I+SGKL RA++ KF +G + G P ++Y+ + + G +G+ V+I Sbjct: 131 AGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRI 190 Query: 632 MLDWDPKGKQGPATPLPDLVTIHPPKDDDEFLRPL 736 M P LPD + I PP++ ++ L+ L Sbjct: 191 M---------PPDVELPDELEIRPPEEVEDELKEL 216
>A2SPK9:RS3_METLZ 30S ribosomal protein S3P - Methanocorpusculum labreanum (strain| ATCC 43576 / DSM 4855 / Z) Length = 231 Score = 115 bits (289), Expect = 2e-25 Identities = 70/199 (35%), Positives = 110/199 (55%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KFVADGV + + L +EL G+ G++I TP+ T++ I A + V+G+ G+ +R Sbjct: 4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +LT+ + + VE+ ++V N L A AE L L G R+A V+R VM Sbjct: 64 QLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +SGA GCEVI++GKL RA+ KF +GY+ SG P ++ + + G++G++VK Sbjct: 122 DSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVK 181 Query: 629 IMLDWDPKGKQGPATPLPD 685 I+ P LPD Sbjct: 182 IV---------PPGAKLPD 191
>O26116:RS3_METTH 30S ribosomal protein S3P - Methanobacterium thermoautotrophicum| Length = 258 Score = 114 bits (285), Expect = 6e-25 Identities = 67/207 (32%), Positives = 110/207 (53%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++ FV +G+ ++E L +EL G+ G++++VTPM T +++ A R V+G G+ +R Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +T ++ +F+ + VE+ V L A + L G+ RR Y +R +M Sbjct: 63 AITQKLKNKFDLENPQVEVKEVDVPE--LNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIM 120 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA+G EV +SGK+R R+ + KF DGY+ G P +++ V L+ GVLG+ V+ Sbjct: 121 AAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVR 180 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPK 709 IM P LPD V I P+ Sbjct: 181 IM---------PPDVVLPDKVEIEDPR 198
>A3CT03:RS3_METMJ 30S ribosomal protein S3P - Methanoculleus marisnigri (strain ATCC| 35101 / DSM 1498 / JR1) Length = 234 Score = 114 bits (285), Expect = 6e-25 Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 10/207 (4%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KF+ DGV + + LT+EL G+ G++I TP+ T++ I A + V+G+ G+++R Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +LT + ++ VE+ ++V N A AE L L G R+A +R +M Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 ESGA GCEVIV+GKL R+++ KF +GY+ G P ++ + + G +G++VK Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVK 181 Query: 629 IMLD----------WDPKGKQGPATPL 679 I+ +P+ K+ PA P+ Sbjct: 182 IVPPDARLPDAFDVLEPEPKKAPAEPI 208
>Q3IMY2:RS3_NATPD 30S ribosomal protein S3P - Natronomonas pharaonis (strain DSM 2160| / ATCC 35678) Length = 305 Score = 114 bits (284), Expect = 8e-25 Identities = 63/216 (29%), Positives = 120/216 (55%) Frame = +2 Query: 80 ISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGR 259 ++ + +F+ DG+ +++E + EL G+ G+E+ TPM T+I+++A + V+G+ G+ Sbjct: 1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGK 60 Query: 260 RIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLR 439 IR++T+ +++ F D V++ ++V L A A+ L L G R+A + + Sbjct: 61 NIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTID 118 Query: 440 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 +MESGA G E+I+SGK+ R++ KF GY+ +G P +D V +++ G +G+ Sbjct: 119 RIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGV 178 Query: 620 KVKIMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFL 727 +VKI+ P LPD ++ + ++F+ Sbjct: 179 QVKII---------PPEAELPDDFEVYEDIEVEDFV 205
>Q2FT39:RS3_METHJ 30S ribosomal protein S3P - Methanospirillum hungatei (strain JF-1| / DSM 864) Length = 237 Score = 113 bits (283), Expect = 1e-24 Identities = 69/193 (35%), Positives = 106/193 (54%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +RKFVADGV + L EL G+ G+++ TP+ T++ I A + V+G+ G+ +R Sbjct: 4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 LT + + +E+ ++V N L A AE L L G R+A LR +M Sbjct: 64 TLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +SGA GCEV++SGKL R + KF +GY+ SG PVN +D + + GV+G++V+ Sbjct: 122 DSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVR 181 Query: 629 IMLDWDPKGKQGP 667 ++ P G Q P Sbjct: 182 LI----PPGAQLP 190
>P54034:RS3_METJA 30S ribosomal protein S3P - Methanococcus jannaschii| Length = 208 Score = 112 bits (280), Expect = 2e-24 Identities = 76/211 (36%), Positives = 111/211 (52%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +R FV + V ++E +EL + G++ +IR TP+ T+III A + V+G +G RIR Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIR 62 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 ELT + K F +++ + V N L A A+ + L GL RR + +R VM Sbjct: 63 ELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVM 120 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GAKG VI+SGKL +RA++ KF GYM G P + +D + GV+G+ VK Sbjct: 121 NAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVK 180 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 IM P LPD + I K+D E Sbjct: 181 IM---------RPDVLLPDEIII---KEDAE 199
>A1RXG6:RS3_THEPD 30S ribosomal protein S3P - Thermofilum pendens (strain Hrk 5)| Length = 202 Score = 112 bits (279), Expect = 3e-24 Identities = 62/181 (34%), Positives = 104/181 (57%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 RK ++ G+ LNE L R+L + + TP+ T++I+ A V+G KG I+ Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 + V+++ F + +++ +V N+ L A A + L+ G+ RRA L +M Sbjct: 66 IAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMA 123 Query: 452 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +GA+G E+++SGKL +QR ++ KF GY+ SG P + +D A+ HVLL+ G+ G+KV+I Sbjct: 124 AGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRI 183 Query: 632 M 634 M Sbjct: 184 M 184
>A2BMC5:RS3_HYPBU 30S ribosomal protein S3P - Hyperthermus butylicus (strain DSM 5456| / JCM 9403) Length = 247 Score = 111 bits (277), Expect = 5e-24 Identities = 70/213 (32%), Positives = 112/213 (52%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 KR F+ + +++E L + G+AGV+I P+ T +II A R ++G +G IR Sbjct: 5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIR 64 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L ++ + F + ++ +V N L A A + L G RR + R V+ Sbjct: 65 QLAAIFEHEFGLSNP--QITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVL 122 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA G ++++SGKLR +RA+ K + G + ++GH V +D AV HV L+ GVLGI+V Sbjct: 123 NAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKPGVLGIEVM 182 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKDDDEFL 727 I+ PA P D V I P++ EF+ Sbjct: 183 IV---------KPAKP-SDYVRIKQPEEVKEFI 205
>Q2NFW2:RS3_METST 30S ribosomal protein S3P - Methanosphaera stadtmanae (strain DSM| 3091) Length = 252 Score = 110 bits (276), Expect = 6e-24 Identities = 66/207 (31%), Positives = 108/207 (52%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++ FV +G+ ++E L +L G+ G++I+VTP+ T +I+ A + V+G G+ +R Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVR 62 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +T ++ F+ + VE+ V L A + L G+ RR Y ++R +M Sbjct: 63 AITKTLKNNFDLENPQVEVKEVDVPE--LNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIM 120 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA+G EV +SGK+R R+ KF +GY+ G P +Y+ V L+ GVLGI V+ Sbjct: 121 SAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVR 180 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPK 709 IM P LPD + I P+ Sbjct: 181 IM---------PPEVTLPDNIEISEPE 198
>A0B9W4:RS3_METTP 30S ribosomal protein S3P - Methanosaeta thermophila (strain DSM| 6194 / PT) (Methanothrix thermophila (strain DSM 6194 / PT)) Length = 276 Score = 110 bits (275), Expect = 8e-24 Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 3/214 (1%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KFV +G A ++E L +EL G+ G+ + TPM T+I + A + V+G+ G+ IR Sbjct: 4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIR 63 Query: 269 ELTSVVQKRFNF--PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRF 442 +LT +++RF P V+ + LN + A A SL + G R+A +LR Sbjct: 64 KLTRDLERRFRLDNPQIDVQDVGKSDLNARVVANRLASSLEH----GWYFRKAGQSMLRR 119 Query: 443 VMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIK 622 VM+SGA GCE+++SGKL R++ KF GY+ SG P + +D + + G +G + Sbjct: 120 VMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQ 179 Query: 623 VKIMLDWDPKGKQGPATPLPDLVTIH-PPKDDDE 721 V+I+ P LPD I+ PPK+ ++ Sbjct: 180 VRIV---------PPGAVLPDDFQINAPPKEPEK 204
>Q18GF5:RS3_HALWD 30S ribosomal protein S3P - Haloquadratum walsbyi (strain DSM| 16790) Length = 323 Score = 110 bits (274), Expect = 1e-23 Identities = 62/211 (29%), Positives = 116/211 (54%) Frame = +2 Query: 80 ISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGR 259 ++ + +F+ +G+ ++++E ELG G+ G+++ TPM T+I+++A + V+G+ G+ Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60 Query: 260 RIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLR 439 IR++T ++ RFN D +++ ++V L A A+ L L G R+A + + Sbjct: 61 NIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTID 118 Query: 440 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 ++ESGA G E+++SGK+ R++ KF GY+ +G P + +D +++ G +G+ Sbjct: 119 RIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVDEGQGVAVMKLGTIGV 178 Query: 620 KVKIMLDWDPKGKQGPATPLPDLVTIHPPKD 712 VKI+ P LPD IH D Sbjct: 179 TVKII---------PPGAELPDDFEIHDDVD 200
>Q0W1Y3:RS3_UNCMA 30S ribosomal protein S3P - Uncultured methanogenic archaeon RC-I| Length = 279 Score = 109 bits (273), Expect = 1e-23 Identities = 67/203 (33%), Positives = 106/203 (52%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KFV +G A ++E +L G+ G+EI TPM T+I ++A + ++G+ G+ IR Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 T + RF + +++ ++V L A A L L G R+A L+ +M Sbjct: 64 RYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +SGA GCEVI++GKL R + KF GY+ G PV + +D + G++G+KV+ Sbjct: 122 DSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVR 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTI 697 IM P LPD +TI Sbjct: 182 IM---------PPEAVLPDQITI 195
>Q12ZU5:RS3_METBU 30S ribosomal protein S3P - Methanococcoides burtonii (strain DSM| 6242) Length = 304 Score = 109 bits (273), Expect = 1e-23 Identities = 60/182 (32%), Positives = 103/182 (56%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 ++KFV DG A ++E ++L G+ G++I TPM T+I + A + V+G+ G+ IR Sbjct: 4 EKKFVQDGYVKASMDEYFAKQLSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIR 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +LT V + ++ + ++ A++V L A A L + G R+A + +R VM Sbjct: 64 KLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA GCE+++SGKL R++ K +GY+ +G PV+ +D + + G LG KV+ Sbjct: 122 NAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVR 181 Query: 629 IM 634 I+ Sbjct: 182 II 183
>P15009:RS3_HALSA 30S ribosomal protein S3P - Halobacterium salinarium (Halobacterium| halobium) Length = 302 Score = 105 bits (263), Expect = 2e-22 Identities = 60/211 (28%), Positives = 113/211 (53%) Frame = +2 Query: 95 KFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 +F+ G+ ++++E EL G+ G+E+ TPM +I+++A + V+G+ G+ IR++ Sbjct: 6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKI 65 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 T+ +++RF+ D +++ ++V L A A+ L L G R+A + + +MES Sbjct: 66 TTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMES 123 Query: 455 GAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIM 634 GA G E+++SGK+ R + KF GY+ +G P + +D +++ G +G+ VKI+ Sbjct: 124 GALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVDHGKGVAVMKLGTIGVNVKII 183 Query: 635 LDWDPKGKQGPATPLPDLVTIHPPKDDDEFL 727 P LPD I D ++ + Sbjct: 184 ---------PPNAELPDDFEIQEDADIEDLV 205
>Q4JB46:RS3_SULAC 30S ribosomal protein S3P - Sulfolobus acidocaldarius| Length = 231 Score = 105 bits (262), Expect = 3e-22 Identities = 66/181 (36%), Positives = 100/181 (55%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 KR F+ ++E L ++ +AGVEI TP+ T +II A R ++G+ G+ I+ Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L V++K F + + + A + N L A A L L G RRA + +R +M Sbjct: 65 QLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 SGA G EVIVSGKL ++RAK K K+G + SG + + ID A+ +L+ GV G++V Sbjct: 123 SSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVV 182 Query: 629 I 631 I Sbjct: 183 I 183
>Q9UXA0:RS3_SULSO 30S ribosomal protein S3P - Sulfolobus solfataricus| Length = 229 Score = 103 bits (258), Expect = 8e-22 Identities = 60/181 (33%), Positives = 98/181 (54%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 KR F+ + +++E L ++ +AGVE+ TP+ T +II A R ++G GR I+ Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L + +K F + + + V N L A A L L G RRA + +R +M Sbjct: 65 QLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIM 122 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA G E+I+SGKL +RA+ K K+G + SG + + ID A+ +L+ G+ G++V Sbjct: 123 NAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVV 182 Query: 629 I 631 I Sbjct: 183 I 183
>Q6LXE7:RS3_METMP 30S ribosomal protein S3P - Methanococcus maripaludis| Length = 211 Score = 102 bits (253), Expect = 3e-21 Identities = 61/203 (30%), Positives = 105/203 (51%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +R FV + V ++E +L G++ ++ + TP+ T I + A + V+G KG+ ++ Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 ELT + ++ + +E+ ++V N L + L G+ R+ + +R VM Sbjct: 63 ELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVM 120 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 SGAKG +IVSGKL +R+++ KF DGYM G P ++ + + L+ G++G+ VK Sbjct: 121 GSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVK 180 Query: 629 IMLDWDPKGKQGPATPLPDLVTI 697 IM P LPD + I Sbjct: 181 IM---------RPDVSLPDEIVI 194
>Q9YF78:RS3_AERPE 30S ribosomal protein S3P - Aeropyrum pernix| Length = 246 Score = 99.4 bits (246), Expect = 2e-20 Identities = 59/186 (31%), Positives = 99/186 (53%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 + F+ G+ +++E L + E G++ V++ T + T I I A R ++G +G IR Sbjct: 7 KHFLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRR 66 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 L V Q F P+ + + E+ N L A QA + + G+ RR + + +M Sbjct: 67 LQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMS 124 Query: 452 SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +GA G E+ +SGKL ++RA+ KFK G + SGH V++ +D A + L +GV+G+ V I Sbjct: 125 NGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVII 184 Query: 632 MLDWDP 649 + P Sbjct: 185 VKPGKP 190
>Q975I7:RS3_SULTO 30S ribosomal protein S3P - Sulfolobus tokodaii| Length = 225 Score = 98.6 bits (244), Expect = 3e-20 Identities = 65/199 (32%), Positives = 106/199 (53%), Gaps = 10/199 (5%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 K+ F+ + ++E L ++ +AGVEI TP+ T +II A R ++G+ G+ I+ Sbjct: 5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIK 64 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L ++++ F + ++ V N L A A L L G RRA + +R +M Sbjct: 65 QLAQMLERYFGLDNP--QITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIM 122 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV- 625 +GA G EVI+SGKL ++RAK K K+G + SG +++ +D AV +L+ GV G+++ Sbjct: 123 NAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKPGVYGVEIL 182 Query: 626 ---------KIMLDWDPKG 655 KI L PKG Sbjct: 183 ITKPMKSVDKIELREQPKG 201
>O28360:RS3_ARCFU 30S ribosomal protein S3P - Archaeoglobus fulgidus| Length = 229 Score = 96.3 bits (238), Expect = 2e-19 Identities = 61/182 (33%), Positives = 98/182 (53%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 +RKFV + + + E + E+ GF GV+I TP+ T++ + R V+G+ GRRI+ Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 LT +K +F ++ ++V A A L L G RRA Y L +M Sbjct: 64 ALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 E+GAKGCE+ +SGKL ++RA++ KF G ++ +G P + + + GVLG+ V+ Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVR 180 Query: 629 IM 634 I+ Sbjct: 181 II 182
>A3MTL3:RS3_PYRCJ 30S ribosomal protein S3P - Pyrobaculum calidifontis (strain JCM| 11548 / VA1) Length = 216 Score = 93.2 bits (230), Expect = 1e-18 Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 1/169 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L L + G+ EI TP+ T I+I A R ++G KG ++E++S++ + Sbjct: 24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVE 83 Query: 308 DGGVELY-AEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 + +++ K+ L A + + G+ RR + +R +ME+GAKG E++VS Sbjct: 84 NPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVS 143 Query: 485 GKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 GKL +RAK K G + G+ + AV HVLL+ G+ GI+V+I Sbjct: 144 GKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>A3DNB3:RS3_STAMF 30S ribosomal protein S3P - Staphylothermus marinus (strain ATCC| 43588 / DSM 3639 / F1) Length = 224 Score = 92.8 bits (229), Expect = 2e-18 Identities = 64/197 (32%), Positives = 100/197 (50%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 L+E L + G+AG+E+ TP ++I A ++G G IR+L +++Q F Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGLE 79 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 + V + V + L A A + L + RR +LR VME+GA G E+I+SG Sbjct: 80 N--VNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISG 137 Query: 488 KLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQGP 667 KLR++RA+ K K G + +G V+ +D AV LL++GV G++V I+ P Sbjct: 138 KLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV---------RP 188 Query: 668 ATPLPDLVTIHPPKDDD 718 PD V I K ++ Sbjct: 189 HLKPPDYVEIKSVKPEE 205
>A1RV98:RS3_PYRIL 30S ribosomal protein S3P - Pyrobaculum islandicum (strain DSM 4184| / JCM 9189) Length = 217 Score = 89.7 bits (221), Expect = 2e-17 Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 1/169 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L +L + G+ EI TP+ T I+I A R ++G+KG ++E+++++ + Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVE 83 Query: 308 DGGVELY-AEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VS Sbjct: 84 NPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVS 143 Query: 485 GKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 GKL +RA+ K G + G+ + AV HVLL+ G+ GI+V+I Sbjct: 144 GKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>Q8ZWI0:RS3_PYRAE 30S ribosomal protein S3P - Pyrobaculum aerophilum| Length = 218 Score = 89.0 bits (219), Expect = 3e-17 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 1/169 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L L + G+ EI TP+ T I+I A R ++G KG ++E+++++ + Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 83 Query: 308 DGGVELY-AEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VS Sbjct: 84 NPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVS 143 Query: 485 GKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 GKL +RA+ K G + G+ + AV HVLL+ G+ GI+V+I Sbjct: 144 GKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>Q6L1C1:RS3_PICTO 30S ribosomal protein S3P - Picrophilus torridus| Length = 217 Score = 86.7 bits (213), Expect = 1e-16 Identities = 58/212 (27%), Positives = 103/212 (48%) Frame = +2 Query: 86 KKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI 265 K+++FV D + ++E L +E GF G+E++ TP T I + R V+G G +I Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKI 61 Query: 266 RELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFV 445 +E+T ++KRF +E+ ++V L ++ + L G R+A LR + Sbjct: 62 KEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKM 119 Query: 446 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 ++ A G + + GK+ +RA++ KF G + SG P ++ L+ G++G+ V Sbjct: 120 IDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSV 179 Query: 626 KIMLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 +I+ LPD + I P K + E Sbjct: 180 RILKS---------NYRLPDDIEIKPVKIEKE 202
>A0RVX9:RS3_CENSY 30S ribosomal protein S3P - Cenarchaeum symbiosum| Length = 261 Score = 82.8 bits (203), Expect = 2e-15 Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 1/181 (0%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 + + + + +L E L + + GF+GVE+ P T+I + TR V+G KG IRE Sbjct: 5 KSVIRENYNMMKLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRE 64 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 LT ++K F+ V++ +++ L + + G A RRA ++ +ME Sbjct: 65 LTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIME 122 Query: 452 -SGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 A G ++ +SGKLR R+ K G + +GH + + V HV G++GI+++ Sbjct: 123 KKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIR 182 Query: 629 I 631 I Sbjct: 183 I 183
>Q97BX1:RS3_THEVO 30S ribosomal protein S3P - Thermoplasma volcanium| Length = 225 Score = 81.6 bits (200), Expect = 4e-15 Identities = 56/204 (27%), Positives = 103/204 (50%) Frame = +2 Query: 86 KKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI 265 K+RKFV + V + E L +E GF + ++ TP T I + R V+G +G ++ Sbjct: 2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKV 61 Query: 266 RELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFV 445 +++T ++K++ +E+ + V + L A+ + L G + R+A L+ Sbjct: 62 QQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRT 119 Query: 446 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +++GA+G + +SGK+ +RA+ KF G + SG P ++ + L+ G+LG+ V Sbjct: 120 IDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGVTV 179 Query: 626 KIMLDWDPKGKQGPATPLPDLVTI 697 KI+ P LPD+ +I Sbjct: 180 KIL---------NPEYKLPDVFSI 194
>Q9HIR5:RS3_THEAC 30S ribosomal protein S3P - Thermoplasma acidophilum| Length = 225 Score = 81.6 bits (200), Expect = 4e-15 Identities = 55/204 (26%), Positives = 102/204 (50%) Frame = +2 Query: 86 KKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI 265 K+RKF+ + V + E + +E GF + ++ TP T I + R V+G +G ++ Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61 Query: 266 RELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFV 445 +++T ++K++ +E+ + V + L A+ + L G + R+A L Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119 Query: 446 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +++GAKG + +SGK+ +RA+ KF G + SG P ++ + L+ G+LG+ V Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179 Query: 626 KIMLDWDPKGKQGPATPLPDLVTI 697 KI+ P LPD+ +I Sbjct: 180 KIL---------NPEYKLPDVFSI 194
>Q5NHW2:RS3_FRATT 30S ribosomal protein S3 - Francisella tularensis subsp. tularensis| Length = 222 Score = 65.9 bits (159), Expect = 2e-10 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 4/173 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R+ V+G+KG + +L + V K Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E+V + A AES+ +L + RRA ++ M+SGAKG +++VS Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQY---IDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +DG + P+ + +D A L GV+G+KV I Sbjct: 155 GRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVWI 202
>Q14JB4:RS3_FRAT1 30S ribosomal protein S3 - Francisella tularensis subsp. tularensis| (strain FSC 198) Length = 222 Score = 65.9 bits (159), Expect = 2e-10 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 4/173 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R+ V+G+KG + +L + V K Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E+V + A AES+ +L + RRA ++ M+SGAKG +++VS Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQY---IDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +DG + P+ + +D A L GV+G+KV I Sbjct: 155 GRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVWI 202
>Q74MZ4:RS3_NANEQ 30S ribosomal protein S3P - Nanoarchaeum equitans| Length = 230 Score = 65.1 bits (157), Expect = 4e-10 Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 1/208 (0%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 RKF+ + E + L + V IR TP+ +II + R + + E R Sbjct: 7 RKFIQNAKLTVFSQEFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAH 63 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGL-AVRRACYGVLRFVM 448 L +++ +F +E+ + N L A AE L + + A RR L +M Sbjct: 64 LAKLLELKFGLEKPVIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIM 121 Query: 449 ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 +GA G E++++G+L QR K+ +FK G + +G +D A L+ GV GI V Sbjct: 122 NAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVT 181 Query: 629 IMLDWDPKGKQGPATPLPDLVTIHPPKD 712 I+ P +PD++ P++ Sbjct: 182 IL---------KPDAEIPDIIEFKSPEE 200
>A4IZS8:RS3_FRATW 30S ribosomal protein S3 - Francisella tularensis subsp. tularensis| (strain WY96-3418) Length = 223 Score = 65.1 bits (157), Expect = 4e-10 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R V+G+KG + +L + V K Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E+V + A AES+ +L + RRA ++ M+SGAKG +++VS Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQY---IDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +DG + P+ + +D A L GV+G+KV I Sbjct: 155 GRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVWI 202
>Q0BNS1:RS3_FRATO 30S ribosomal protein S3 - Francisella tularensis subsp. holarctica| (strain OSU18) Length = 223 Score = 65.1 bits (157), Expect = 4e-10 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R V+G+KG + +L + V K Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E+V + A AES+ +L + RRA ++ M+SGAKG +++VS Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQY---IDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +DG + P+ + +D A L GV+G+KV I Sbjct: 155 GRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVWI 202
>A0Q4I9:RS3_FRATN 30S ribosomal protein S3 - Francisella tularensis subsp. novicida| (strain U112) Length = 223 Score = 65.1 bits (157), Expect = 4e-10 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R V+G+KG + +L + V K Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E+V + A AES+ +L + RRA ++ M+SGAKG +++VS Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQY---IDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +DG + P+ + +D A L GV+G+KV I Sbjct: 155 GRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVWI 202
>Q2A5G4:RS3_FRATH 30S ribosomal protein S3 - Francisella tularensis subsp. holarctica| (strain LVS) Length = 223 Score = 65.1 bits (157), Expect = 4e-10 Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 4/173 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R V+G+KG + +L + V K Sbjct: 38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E+V + A AES+ +L + RRA ++ M+SGAKG +++VS Sbjct: 98 P---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQY---IDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +DG + P+ + +D A L GV+G+KV I Sbjct: 155 GRLGGAEIARSEWARDGRV-----PLQTFRADVDYATAEALTTYGVIGVKVWI 202
>Q9RXJ6:RS3_DEIRA 30S ribosomal protein S3 - Deinococcus radiodurans| Length = 249 Score = 64.7 bits (156), Expect = 5e-10 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ +++ ++L G A +EI + +II A + V+G+ G I+EL +++ + Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERLVSA 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 G V + ++ N + A A + ++ A RRA + VMESGA+G +VI+S Sbjct: 98 --GTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A++A++ K +G + H + ID G+LGIKV + Sbjct: 156 GRLGGAEQARTEKVLEGRV--PLHTLRADIDYGTALARTTYGILGIKVLV 203
>P80372:RS3_THET8 30S ribosomal protein S3 - Thermus thermophilus (strain HB8 / ATCC| 27634 / DSM 579) Length = 239 Score = 63.5 bits (153), Expect = 1e-09 Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 1/181 (0%) Frame = +2 Query: 137 MLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDGG 316 +L +EL G A V+I + + + V+G G RIR L + K Sbjct: 42 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAK---LTGKN 98 Query: 317 VELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL- 493 V L ++V N L A A+ + ++ AVRRA ++ VMESGAKG +VIVSG++ Sbjct: 99 VALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIG 158 Query: 494 RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPAT 673 A++A++ G + H + ID GVLG+K I L G++ A Sbjct: 159 GAEQARTEWAAQGRV--PLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKAR 216 Query: 674 P 676 P Sbjct: 217 P 217
>P62663:RS3_THET2 30S ribosomal protein S3 - Thermus thermophilus (strain HB27 / ATCC| BAA-163 / DSM 7039) Length = 239 Score = 63.5 bits (153), Expect = 1e-09 Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 1/181 (0%) Frame = +2 Query: 137 MLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDGG 316 +L +EL G A V+I + + + V+G G RIR L + K Sbjct: 42 LLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAK---LTGKN 98 Query: 317 VELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL- 493 V L ++V N L A A+ + ++ AVRRA ++ VMESGAKG +VIVSG++ Sbjct: 99 VALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIG 158 Query: 494 RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPAT 673 A++A++ G + H + ID GVLG+K I L G++ A Sbjct: 159 GAEQARTEWAAQGRV--PLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKAR 216 Query: 674 P 676 P Sbjct: 217 P 217
>Q1IX78:RS3_DEIGD 30S ribosomal protein S3 - Deinococcus geothermalis (strain DSM| 11300) Length = 248 Score = 61.6 bits (148), Expect = 4e-09 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ ++++++L G A +EI + +II A + V+G+ G I++L +++ + Sbjct: 38 KIRKLVSQKLAAAGIARIEIERAGQQVNVIISAAKPGIVIGKGGESIKQLRGEIERLVSA 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 G V + ++ N + A A + ++ A RRA + VMESGA+G +VI+S Sbjct: 98 --GTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A++A++ K +G + H + ID G LGIKV + Sbjct: 156 GRLGGAEQARTEKVLEGRV--PLHTLRADIDYGTARAETTYGSLGIKVLV 203
>Q0ANQ6:RS3_MARMM 30S ribosomal protein S3 - Maricaulis maris (strain MCS10)| Length = 234 Score = 59.3 bits (142), Expect = 2e-08 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 5/184 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ +ML L + + I + + + R V+G+KG I L + K Sbjct: 38 KIRKMLKERLKNASVSKIVIERPHKKCRVTVHTARPGVVIGKKGSDIETLRKELSKMI-- 95 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 DG V L +V + A AES+ +L +A RRA ++ M GAKGC+++ Sbjct: 96 -DGEVHLNLVEVRKPEIDAALVAESIAQQLERRVAFRRAMKRSMQSAMRMGAKGCKIVCG 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A++ ++ +G + H + ID G++GIKV I +++ DP Sbjct: 155 GRLGGAEIARTEQYNEGSV--PLHTLRADIDYGTCEAKTAMGIIGIKVWIYKGEIMEHDP 212 Query: 650 KGKQ 661 ++ Sbjct: 213 NAQE 216
>Q7NQF8:RS3_CHRVO 30S ribosomal protein S3 - Chromobacterium violaceum| Length = 233 Score = 59.3 bits (142), Expect = 2e-08 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 5/189 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ E L + LG V I I I + R V+G+KG I L +QKR Sbjct: 38 EVREFLKKRLGHASVGRVTIERPAKSARITIHSARPGVVIGKKGEDIEVLKQELQKRLGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V L A A+ + +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEVRKPELDAQIIADGIASQLEKRVMFRRAMKRAMQNAMRLGAEGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+S +++G + H + +D A G++GIKV W KG+ Sbjct: 155 GRLNGIDIARSEWYREGRV--PLHTLRADVDYATSEAKTTYGIIGIKV-----WVYKGEL 207 Query: 662 GP----ATP 676 P ATP Sbjct: 208 KPGQVQATP 216
>Q6KI49:RS3_MYCMO 30S ribosomal protein S3 - Mycoplasma mobile| Length = 225 Score = 58.9 bits (141), Expect = 3e-08 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 1/151 (0%) Frame = +2 Query: 209 IIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRY 388 +++ + + +LG+ G I +LT +QK + + + + N L A+ AE + Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126 Query: 389 KLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQ 565 KL R A +R M+SGAKG + VSG+L A+S + +G M H + Q Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEM--KLHTLRQ 184 Query: 566 YIDGAVRHVLLRQGVLGIKVKIMLDWDPKGK 658 +D A+ G +G+KV W KG+ Sbjct: 185 DVDFAMATARTTYGAIGVKV-----WVSKGE 210
>O84527:RS3_CHLTR 30S ribosomal protein S3 - Chlamydia trachomatis| Length = 224 Score = 58.9 bits (141), Expect = 3e-08 Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 4/180 (2%) Frame = +2 Query: 110 GVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS 280 G FL E + E L ++ G AG ++ + E+ I R V+G+KG + L + Sbjct: 30 GKFLIEDVKIREFLKKKPSCQGAAGFVVKRMSGKIEVTIHTARPGLVIGKKGAEVESLKA 89 Query: 281 VVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGA 460 ++K D V + +V L A A+ + ++ ++ RRA L+ VM++GA Sbjct: 90 ELKK---LTDKDVWVEIAEVKRPELNAQLVADGIAKQIERRVSFRRAMKKALQSVMDAGA 146 Query: 461 KGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIML 637 G +V VSG+L A+ A+S +K+G + H + ID A G++GIKV I L Sbjct: 147 LGVKVQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYATASAETTYGIIGIKVWINL 204
>Q7MTL9:RS3_PORGI 30S ribosomal protein S3 - Porphyromonas gingivalis (Bacteroides| gingivalis) Length = 246 Score = 58.5 bits (140), Expect = 4e-08 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 1/171 (0%) Frame = +2 Query: 122 AELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 301 + + + L L + + + I I I R ++G+ G+ + +L + KR Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEEL-KRIT 94 Query: 302 FPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 481 D + +Y ++ L A AE++ +L G +A RRA + M GA+G ++ V Sbjct: 95 KKDVQINIY--EIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152 Query: 482 SGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 SG+L A+ A+S FK+G + H + ID A+ L + G+LGIKV I Sbjct: 153 SGRLNGAEMARSEMFKEGR--TPLHTLRADIDYALAEALTKVGLLGIKVWI 201
>A1B033:RS3_PARDP 30S ribosomal protein S3 - Paracoccus denitrificans (strain Pd| 1222) Length = 240 Score = 58.2 bits (139), Expect = 5e-08 Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 5/202 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + + +E + G + V I + + I A R ++G+KG I L +K NF Sbjct: 38 KIRDFIKKEAKQAGVSRVVIERPHKKCRVTIYAARPGVIIGKKGADIETLR---KKLANF 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 + L +V L A AES+ +L ++ RRA ++ M GA G V VS Sbjct: 95 TGSELHLNIVEVRKPELDAQLVAESIAQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A++ +++G + H + ID A+ G++G+KV I +++ DP Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYALSEASTPYGIIGVKVWIFKGEIMEHDP 212 Query: 650 KGKQGPATPLPDLVTIHPPKDD 715 + + AT D + P+ D Sbjct: 213 QARDRRATEAQDGPSPRGPRRD 234
>Q9HWE1:RS3_PSEAE 30S ribosomal protein S3 - Pseudomonas aeruginosa| Length = 228 Score = 57.8 bits (138), Expect = 6e-08 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 5/202 (2%) Frame = +2 Query: 92 RKFVADGVFL-AELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 RK AD +F ++ E L +L + ++I I I R V+G+KG + Sbjct: 26 RKNYADYLFADLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVE 85 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L + K+ P V + E++ L A+ A+S+ +L + RRA ++ M Sbjct: 86 KLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAM 142 Query: 449 ESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 GAKG ++ VSG+L A+ A++ +++G + H + ID A GV+G+KV Sbjct: 143 RIGAKGIKIQVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYATYEAHTTYGVIGVKV 200 Query: 626 KIMLDWDPKGKQ---GPATPLP 682 I G+Q P P P Sbjct: 201 WIFKGEVIGGRQEELKPVAPAP 222
>Q02T74:RS3_PSEAB 30S ribosomal protein S3 - Pseudomonas aeruginosa (strain| UCBPP-PA14) Length = 228 Score = 57.8 bits (138), Expect = 6e-08 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 5/202 (2%) Frame = +2 Query: 92 RKFVADGVFL-AELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 RK AD +F ++ E L +L + ++I I I R V+G+KG + Sbjct: 26 RKNYADYLFADLKVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVE 85 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L + K+ P V + E++ L A+ A+S+ +L + RRA ++ M Sbjct: 86 KLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAM 142 Query: 449 ESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 GAKG ++ VSG+L A+ A++ +++G + H + ID A GV+G+KV Sbjct: 143 RIGAKGIKIQVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYATYEAHTTYGVIGVKV 200 Query: 626 KIMLDWDPKGKQ---GPATPLP 682 I G+Q P P P Sbjct: 201 WIFKGEVIGGRQEELKPVAPAP 222
>Q3KLH5:RS3_CHLTA 30S ribosomal protein S3 - Chlamydia trachomatis (strain A/HAR-13 /| ATCC VR-571B) Length = 224 Score = 57.8 bits (138), Expect = 6e-08 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 4/180 (2%) Frame = +2 Query: 110 GVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS 280 G FL E + E L ++ G AG ++ + E+ I R V+G+KG + L + Sbjct: 30 GKFLIEDVKIREFLKKKPSCQGAAGFVVKRMSGKIEVTIHTARPGLVIGKKGAEVESLKA 89 Query: 281 VVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGA 460 + K+ D VE+ +V L A A+ + ++ ++ RRA L+ VM++GA Sbjct: 90 EL-KKLTGKDVWVEI--AEVKRPELNAQLVADGIAKQIERRVSFRRAMKKALQSVMDAGA 146 Query: 461 KGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIML 637 G +V VSG+L A+ A+S +K+G + H + ID A G++GIKV I L Sbjct: 147 LGVKVQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYATASAETTYGIIGIKVWINL 204
>Q9PJM0:RS3_CHLMU 30S ribosomal protein S3 - Chlamydia muridarum| Length = 224 Score = 57.8 bits (138), Expect = 6e-08 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 4/180 (2%) Frame = +2 Query: 110 GVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS 280 G FL E + E L ++ G AG ++ + E+ I R V+G+KG + L + Sbjct: 30 GKFLIEDVRIREFLKKKPSCQGAAGFVVKRMSGKIEVTIHTARPGLVIGKKGAEVESLKA 89 Query: 281 VVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGA 460 + K+ D VE+ +V L A A+ + ++ ++ RRA L+ VM++GA Sbjct: 90 EL-KKLTGKDVWVEI--AEVKRPELNAQLVADGIAKQIERRVSFRRAMKKALQSVMDAGA 146 Query: 461 KGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIML 637 G +V VSG+L A+ A+S +K+G + H + ID A G++GIKV I L Sbjct: 147 LGVKVQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYATASAETTYGIIGIKVWINL 204
>Q7M8E0:RS3_WOLSU 30S ribosomal protein S3 - Wolinella succinogenes| Length = 236 Score = 57.4 bits (137), Expect = 8e-08 Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL G + + I T + + + A R ++G+KG I +L ++K Sbjct: 38 KIRKFLKKELYYAGVSEIIIERTAKKLRVTVVAARPGIIIGKKGADIEKLKEALKK---I 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + + ++V A AE++ +L +A RRA V++ M++GAKG ++ VS Sbjct: 95 VDKEISINIKEVKRPQANAQLAAENVTMQLERRVAFRRAMKKVMQAAMKAGAKGIKIKVS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ + +G + H + ID + G++G KV I Sbjct: 155 GRLAGAEMARTEWYMEGRV--PLHTLRAKIDYGFAEAMTTYGIIGAKVWI 202
>Q5L714:RS3_CHLAB 30S ribosomal protein S3 - Chlamydophila abortus| Length = 223 Score = 57.0 bits (136), Expect = 1e-07 Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 6/195 (3%) Frame = +2 Query: 71 ALQISKKRKFVADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNV 241 +L K++F G FL E + E L ++ G AG +R + E+ I+ R V Sbjct: 20 SLWYGNKQEF---GKFLIEDVKIREFLRKKPSCQGAAGFVVRRMSGKIEVTIQTARPGLV 76 Query: 242 LGEKGRRIRELTSVVQKRFNFPDGGVELYAE--KVLNRGLCAVAQAESLRYKLLGGLAVR 415 +G+KG + L ++K G E++ E ++ L A A+++ ++ ++ R Sbjct: 77 IGKKGAEVDLLKEELRKL-----TGKEVWVEIAEIKRPELNAKLVADNIARQIERRVSFR 131 Query: 416 RACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHV 592 RA ++ VM++GA G ++ VSG+L A+ A+S +K+G + H + ID A Sbjct: 132 RAMKKAMQSVMDAGAVGVKIQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYAAASA 189 Query: 593 LLRQGVLGIKVKIML 637 G++G+KV I L Sbjct: 190 ATTYGIIGVKVWINL 204
>Q47J97:RS3_DECAR 30S ribosomal protein S3 - Dechloromonas aromatica (strain RCB)| Length = 261 Score = 56.2 bits (134), Expect = 2e-07 Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 1/198 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L R+L V I + + + R V+G+KG I +L + +Q+ Sbjct: 38 KVREYLKRKLAHASVGRVLIERPAKNARVTVYSARPGVVIGKKGEDIEQLRTDLQRIMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ + A A+S+ +L + RRA ++ M GA+G +V+ + Sbjct: 98 P---VHVSIEEIRKPEIDAQLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKVMSA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A+S +++G + H + ID A L G++GIKV W KG Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYATSEALTTYGIIGIKV-----WVYKGDM 207 Query: 662 GPATPLPDLVTIHPPKDD 715 P V P DD Sbjct: 208 LDRNEQP--VAEEPAADD 223
>Q252V9:RS3_CHLFF 30S ribosomal protein S3 - Chlamydophila felis (strain Fe/C-56)| Length = 223 Score = 56.2 bits (134), Expect = 2e-07 Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 6/195 (3%) Frame = +2 Query: 71 ALQISKKRKFVADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNV 241 +L K++F G FL E + E L ++ G AG +R + E+ I+ R V Sbjct: 20 SLWYGNKQEF---GKFLIEDVKIREHLRKKPSCQGAAGFVVRRMSGKIEVTIQTARPGLV 76 Query: 242 LGEKGRRIRELTSVVQKRFNFPDGGVELYAE--KVLNRGLCAVAQAESLRYKLLGGLAVR 415 +G+KG + L ++K G E++ E ++ L A A+++ ++ ++ R Sbjct: 77 IGKKGAEVDLLKEELRKLT-----GKEVWVEIAEIKRPELNAKLVADNIARQIERRVSFR 131 Query: 416 RACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHV 592 RA ++ VME+GA G ++ VSG+L A+ A+S +K+G + H + ID A Sbjct: 132 RAMKKAMQSVMEAGAIGVKIQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYATASA 189 Query: 593 LLRQGVLGIKVKIML 637 G++G+KV I L Sbjct: 190 ETTYGIIGVKVWINL 204
>Q5LW56:RS3_SILPO 30S ribosomal protein S3 - Silicibacter pomeroyi| Length = 235 Score = 55.8 bits (133), Expect = 2e-07 Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 5/191 (2%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E + E + G A V I + + I R ++G+KG I L +K N Sbjct: 39 IREFIKEECKQAGVARVIIERPHKKCRVTIHTARPGVIIGKKGADIETLR---KKLANMT 95 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 D + L +V + A AES+ +L ++ RRA ++ M GA G V V+G Sbjct: 96 DSELHLNIVEVRKPEMDAQLVAESIAQQLERRVSFRRAMKRAVQNSMRMGALGIRVNVAG 155 Query: 488 KL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDPK 652 +L A+ A++ +++G + H + ID A+ G++GIKV I +L+ DP+ Sbjct: 156 RLGGAEIARTEWYREGRV--PLHTLRADIDYALAEASTPYGIIGIKVWIFKGEILEHDPQ 213 Query: 653 GKQGPATPLPD 685 + A L D Sbjct: 214 ARDRKAQELQD 224
>A1AVK6:RS3_RUTMC 30S ribosomal protein S3 - Ruthia magnifica subsp. Calyptogena| magnifica Length = 232 Score = 55.8 bits (133), Expect = 2e-07 Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +L + ++I +I I R ++G+KG I +L S+V K Sbjct: 38 KVRDYLFDKLTNASVSRIQIERLANNAKITIHTARPGIIIGKKGADIEQLKSIVSKMMGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A AE++ +L + RRA VL GAKG +V+V+ Sbjct: 98 P---VHINIEEIKKPELDARLVAENIAQQLEKRVMYRRAVKRVLGNTTRLGAKGIKVMVN 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H +D + + GV+GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTFRADVDYSSYGANTQYGVIGIKVWI 202
>Q7MPI2:RS3_VIBVY 30S ribosomal protein S3 - Vibrio vulnificus (strain YJ016)| Length = 233 Score = 55.5 bits (132), Expect = 3e-07 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + LT+EL + + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRQFLTKELSKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRTAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A +S+ +L + RRA ++ M GAKG Sbjct: 92 AKIAGVP---AQINIAEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID A GV+GIKV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYATSSAHTTYGVIGIKVWI 202
>Q8DE45:RS3_VIBVU 30S ribosomal protein S3 - Vibrio vulnificus| Length = 233 Score = 55.5 bits (132), Expect = 3e-07 Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + LT+EL + + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRQFLTKELSKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRTAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A +S+ +L + RRA ++ M GAKG Sbjct: 92 AKIAGVP---AQINIAEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID A GV+GIKV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYATSSAHTTYGVIGIKVWI 202
>Q47LJ9:RS3_THEFY 30S ribosomal protein S3 - Thermobifida fusca (strain YX)| Length = 270 Score = 55.5 bits (132), Expect = 3e-07 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 1/169 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + +MLTR + G + VEI T R + + R V+G +G + + ++K N Sbjct: 38 IRQMLTRGMERAGISKVEIERTRERVRVDVHTARPGIVIGRRGAEADRIRANLEKLTNKQ 97 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V+L +V N + A A+ + +L +A RRA ++ M+SGAKG V SG Sbjct: 98 ---VQLNILEVKNPEIDAQLVAQGVAEQLSSRVAFRRAMRKAIQSAMKSGAKGIRVQCSG 154 Query: 488 KL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +L A+ ++S +++G + H + ID G +G+KV I Sbjct: 155 RLGGAEMSRSEFYREGRV--PLHTLRADIDYGFFEARTTFGRIGVKVWI 201
>Q4K539:RS3_PSEF5 30S ribosomal protein S3 - Pseudomonas fluorescens (strain Pf-5 /| ATCC BAA-477) Length = 228 Score = 55.5 bits (132), Expect = 3e-07 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 6/194 (3%) Frame = +2 Query: 119 LAELN--EMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 292 LA+LN E L +L + ++I I I R V+G+KG + +L + K Sbjct: 34 LADLNVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTK 93 Query: 293 RFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 472 + P V + E++ L + A+S+ +L + RRA ++ M GAKG + Sbjct: 94 QMGVP---VHINIEEIRKPELDGMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIK 150 Query: 473 VIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDP 649 + VSG+L A+ A++ +++G + H + ID A GV+G+KV I Sbjct: 151 IQVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYATYEAHTTYGVIGVKVWIFKGEVI 208 Query: 650 KGKQ---GPATPLP 682 G+Q P P P Sbjct: 209 GGRQEELKPQAPAP 222
>Q88QM9:RS3_PSEPK 30S ribosomal protein S3 - Pseudomonas putida (strain KT2440)| Length = 228 Score = 55.1 bits (131), Expect = 4e-07 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 11/204 (5%) Frame = +2 Query: 104 ADGVFLAE--LNEMLTRELGED-----GFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRR 262 ADG A+ L ++ TRE +D + ++I I I R V+G+KG Sbjct: 24 ADGATYADYLLKDLKTREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGED 83 Query: 263 IRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRF 442 + +L + K+ P V + E++ L A+ A+S+ +L + RRA ++ Sbjct: 84 VEKLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQN 140 Query: 443 VMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 M GAKG ++ VSG+L A+ A++ +++G + H + ID GV+G+ Sbjct: 141 AMRIGAKGIKIQVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYNTYEAHTTYGVIGV 198 Query: 620 KVKIMLDWDPKGKQ---GPATPLP 682 KV I G+Q P P P Sbjct: 199 KVWIFKGEVIGGRQEELKPQAPAP 222
>Q1IFW0:RS3_PSEE4 30S ribosomal protein S3 - Pseudomonas entomophila (strain L48)| Length = 228 Score = 55.1 bits (131), Expect = 4e-07 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 11/204 (5%) Frame = +2 Query: 104 ADGVFLAE--LNEMLTRELGED-----GFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRR 262 ADG A+ L ++ TRE +D + ++I I I R V+G+KG Sbjct: 24 ADGATYADYLLKDLQTREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGED 83 Query: 263 IRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRF 442 + +L + K+ P V + E++ L A+ A+S+ +L + RRA ++ Sbjct: 84 VEKLRQDLTKQMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQN 140 Query: 443 VMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGI 619 M GAKG ++ VSG+L A+ A++ +++G + H + ID GV+G+ Sbjct: 141 AMRIGAKGIKIQVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYNTYEAHTTYGVIGV 198 Query: 620 KVKIMLDWDPKGKQ---GPATPLP 682 KV I G+Q P P P Sbjct: 199 KVWIFKGEVIGGRQEELKPQAPAP 222
>Q2YAZ1:RS3_NITMU 30S ribosomal protein S3 - Nitrosospira multiformis (strain ATCC| 25196 / NCIMB 11849) Length = 286 Score = 55.1 bits (131), Expect = 4e-07 Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 3/206 (1%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L V I I I ++R V+G+KG I L +QK Sbjct: 38 KVREYLKKKLAHASVGRVVIERPSKNARITIYSSRPGVVIGKKGEDIEVLRGALQKLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ + A A+++ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEIRKPEIDAQLIADNIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIML-DWDPKGK 658 G+L + A++ +++G + H + +D V GV+GIKV + + +G+ Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADLDYGVSEAKTTYGVIGIKVWVFKGEVIGRGE 212 Query: 659 Q-GPATPLPDLVTIHPPKDDDEFLRP 733 Q G T P ++ PP + E RP Sbjct: 213 QAGAGTAAPQVL---PPAGEPETRRP 235
>Q824P5:RS3_CHLCV 30S ribosomal protein S3 - Chlamydophila caviae| Length = 223 Score = 54.7 bits (130), Expect = 5e-07 Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 6/195 (3%) Frame = +2 Query: 71 ALQISKKRKFVADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNV 241 +L K++F G FL E + E L ++ G AG +R + E+ I+ R V Sbjct: 20 SLWYGNKQEF---GKFLIEDVKIREHLRKKPSCQGAAGFIVRRMSGKIEVTIQTARPGLV 76 Query: 242 LGEKGRRIRELTSVVQKRFNFPDGGVELYAE--KVLNRGLCAVAQAESLRYKLLGGLAVR 415 +G+KG + L ++K G E++ E ++ L A A+++ ++ ++ R Sbjct: 77 IGKKGAEVDLLKEELRKLT-----GKEVWVEIAEIKRPELNAKLVADNIARQIERRVSFR 131 Query: 416 RACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHV 592 RA ++ VM++GA G ++ VSG+L A+ A+S +K+G + H + ID A Sbjct: 132 RAMKKAMQSVMDAGAIGVKIQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYATASA 189 Query: 593 LLRQGVLGIKVKIML 637 G++G+KV I L Sbjct: 190 ETTYGIIGVKVWINL 204
>Q1H4N1:RS3_METFK 30S ribosomal protein S3 - Methylobacillus flagellatus (strain KT /| ATCC 51484 / DSM 6875) Length = 236 Score = 54.3 bits (129), Expect = 7e-07 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 1/168 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + + I +I I + R V+G+KG I L S +Q Sbjct: 38 KVREFLKKKLAHAAVSKIVIERPAKNAKITIYSARPGIVIGKKGEDIESLRSGLQGLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V L E+V + A AES+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHLNIEEVRKPEIDATLIAESIAQQLEKRVMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 G+L + A++ +++G + H + ID V G++GIKV Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGVAEAKTTYGIIGIKV 200
>Q1ISB6:RS3_ACIBL 30S ribosomal protein S3 - Acidobacteria bacterium (strain| Ellin345) Length = 223 Score = 54.3 bits (129), Expect = 7e-07 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 1/183 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 +L L +L G + +E+ + IIIR R ++G KG I +L +QKR N Sbjct: 37 KLKAELKEKLKSAGVSSIEVERPGNKLRIIIRTARPGIIIGRKGAEIDKLKGELQKRTN- 95 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + ++V L A AES+ +L + RRA + + G KG +V VS Sbjct: 96 --REVYIDIQEVHKPELDAQLVAESIALQLEKRVGFRRAMRKSVDSALRFGCKGIKVRVS 153 Query: 485 GKLRAQR-AKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+S + G + H + ID GV+G+K W KG+ Sbjct: 154 GRLNGNEIARSEWYLQGRL--PLHTLRADIDYGFAEARTTYGVIGVKA-----WVYKGEI 206 Query: 662 GPA 670 PA Sbjct: 207 LPA 209
>O83225:RS3_TREPA 30S ribosomal protein S3 - Treponema pallidum| Length = 247 Score = 53.9 bits (128), Expect = 9e-07 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 1/153 (0%) Frame = +2 Query: 170 AGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNR 349 A VEI P R +++ R V+G KG I ++ + VQKR N V++ +++ Sbjct: 55 AEVEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRM 111 Query: 350 GLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL-RAQRAKSMKFK 526 L A A+++ +L ++ R+ M+SGA+G ++ VSG+L A+ +++ + K Sbjct: 112 ELNAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIK 171 Query: 527 DGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +G + H + ID G +G+KV Sbjct: 172 EGR--TPLHTLRADIDYGFAEAHTTYGSIGVKV 202
>A1T0D6:RS3_PSYIN 30S ribosomal protein S3 - Psychromonas ingrahamii (strain 37)| Length = 230 Score = 53.9 bits (128), Expect = 9e-07 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 1/198 (0%) Frame = +2 Query: 89 KRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIR 268 K+ F A+ E+ + LT +L + + I + I R V+G+KG + Sbjct: 26 KKDFAANLFSDFEIRKFLTEKLKNASLSKITIERPAKSVRVTIHTARPGVVIGKKGEDVE 85 Query: 269 ELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVM 448 +L + + K P ++ +V L A A+S+ +L + RRA ++ M Sbjct: 86 KLRTAIAKMAGVP---AQINISEVRKPELDAKLVADSISSQLERRVMFRRAMKRAVQNAM 142 Query: 449 ESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 GAKG +V V G+L A+ A+S +++G + H + ID + G++G+KV Sbjct: 143 RLGAKGIKVQVGGRLGGAEIARSEWYREGRV--PLHTLRADIDYSTSEAHTVYGIIGVKV 200 Query: 626 KIMLDWDPKGKQGPATPL 679 W KG+ PL Sbjct: 201 -----WIFKGEVLGGLPL 213
>A4VHN6:RS3_PSEU5 30S ribosomal protein S3 - Pseudomonas stutzeri (strain A1501)| Length = 228 Score = 53.9 bits (128), Expect = 9e-07 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 3/174 (1%) Frame = +2 Query: 119 LAELN--EMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQK 292 LA+LN E L +L + ++I I I R V+G+KG + +L + K Sbjct: 34 LADLNVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTK 93 Query: 293 RFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 472 + P V + E++ L A+ A+S+ +L + RRA ++ M GAKG + Sbjct: 94 QMGVP---VHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIK 150 Query: 473 VIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 + VSG+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 151 IQVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYNTYEAHTTYGVIGVKVWI 202
>Q5E8A9:RS3_VIBF1 30S ribosomal protein S3 - Vibrio fischeri (strain ATCC 700601 /| ES114) Length = 232 Score = 53.5 bits (127), Expect = 1e-06 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + LT+EL + + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRQYLTKELKKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAGV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A+S+ +L + RRA ++ M GAKG Sbjct: 92 AKIAGVP---AQINIAEVRKPELDGQLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID A + GV+G+KV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYATSSAHTQYGVIGVKVWI 202
>Q4FLM4:RS3_PELUB 30S ribosomal protein S3 - Pelagibacter ubique| Length = 226 Score = 53.1 bits (126), Expect = 2e-06 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 4/187 (2%) Frame = +2 Query: 83 SKKRKFVADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEK 253 +KK+ F G +L E + + + + G + V I T + + I +R V+G+K Sbjct: 24 AKKKDF---GNYLIEDFKIRAYIKKNVVNSGVSKVMIERTSNKCFVTIYTSRPGFVIGKK 80 Query: 254 GRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGV 433 G I ++ + + K F + V L ++V A AE++ +L+ ++ RRA Sbjct: 81 GSDIDKIKNNLSK---FTNNEVTLNIKEVKKPETNAYLVAENIAQQLVKRISYRRAMKRA 137 Query: 434 LRFVMESGAKGCEVIVSGKLRAQR-AKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGV 610 ++ + GAKG +V +SG+L A++ ++G + S H + ID A L G+ Sbjct: 138 MQSCLRLGAKGIKVSISGRLGGNEIARTEWLREGSIPS--HTLRADIDYAEAEALTTFGI 195 Query: 611 LGIKVKI 631 +GIK+ I Sbjct: 196 IGIKIWI 202
>Q7NEF8:RS3_GLOVI 30S ribosomal protein S3 - Gloeobacter violaceus| Length = 247 Score = 53.1 bits (126), Expect = 2e-06 Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 1/197 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + ++L G A V+I + EI IR R V+G G I EL + ++K Sbjct: 38 KIRAYIVKKLASGGIADVDIERKADQVEITIRTARPGVVVGRGGAGIDELKANLEKLIGR 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 + + +V A AE + +L +A RRA ++ +G +G +V+V+ Sbjct: 98 RQ--IRINVVEVQRVDAEAALIAEYIVGQLERRVAFRRAVRQAIQRAQRAGVQGIKVMVA 155 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A+S ++G + H + ID A + G LG+KV I G Sbjct: 156 GRLNGAEIARSEWTREGRI--PLHTLRADIDYAYKIAQTTYGTLGVKVWIFRGEILPGAG 213 Query: 662 GPATPLPDLVTIHPPKD 712 GPA P+ V P D Sbjct: 214 GPAA-APEEVAAQPKPD 229
>Q87T07:RS3_VIBPA 30S ribosomal protein S3 - Vibrio parahaemolyticus| Length = 232 Score = 52.8 bits (125), Expect = 2e-06 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + LT EL + + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRQFLTSELKKASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A +S+ +L + RRA ++ M GAKG Sbjct: 92 AKIAGVP---AQINIAEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID A + GV+GIK I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYATSSAHTQYGVIGIKTWI 202
>Q9KNZ0:RS3_VIBCH 30S ribosomal protein S3 - Vibrio cholerae| Length = 233 Score = 52.8 bits (125), Expect = 2e-06 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L++EL + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRQYLSKELANASLSRIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRAAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A+S+ +L + RRA ++ M GAKG Sbjct: 92 AKIAGVP---AQINIAEVRKPELDGQLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID A GV+G+KV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYATSSAHTTYGVIGVKVWI 202
>Q21M51:RS3_SACD2 30S ribosomal protein S3 - Saccharophagus degradans (strain 2-40 /| ATCC 43961 / DSM 17024) Length = 224 Score = 52.8 bits (125), Expect = 2e-06 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + + L + ++I + I R V+G+KG + +L + + K+ Sbjct: 38 QVRKYIQNALAHASVSRIDIERPANTARVTIHTARPGIVIGKKGEDVEKLRTELTKQMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A A+S+ +L + RRA ++ M GA+G +V V Sbjct: 98 P---VHINIEEIRKPDLDAALAAQSVAQQLERRVMFRRAMKRTVQNAMRQGAEGVKVQVG 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID A G++G+KV I Sbjct: 155 GRLGGAEIARSEWYREGRV--PLHTLRADIDYATAEASTTYGIIGVKVWI 202
>Q0AII9:RS3_NITEC 30S ribosomal protein S3 - Nitrosomonas eutropha (strain C71)| Length = 215 Score = 52.8 bits (125), Expect = 2e-06 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 4/187 (2%) Frame = +2 Query: 113 VFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSV 283 VFL E + + L + L + I +I I +R V+G+KG I L Sbjct: 31 VFLNEDINVRQYLQKRLAHASVGSIIIERPSRNAKITIHTSRPGVVIGKKGEDIEILRKN 90 Query: 284 VQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAK 463 V+K N P V + E++ + A A S+ +L + RRA ++ M GA+ Sbjct: 91 VEKLMNVP---VHINIEEIRKPEIDAQLIAASITQQLEKRIMFRRAMKRAIQNAMRLGAQ 147 Query: 464 GCEVIVSGKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLD 640 G +++ SG+L + A++ +++G + H + +D GV+G+KV Sbjct: 148 GIKIMSSGRLNGIEIARTEWYREGRV--PLHTLRAEVDYGTSEAKTTYGVIGVKV----- 200 Query: 641 WDPKGKQ 661 W KG+Q Sbjct: 201 WVFKGEQ 207
>Q4ZMQ0:RS3_PSEU2 30S ribosomal protein S3 - Pseudomonas syringae pv. syringae| (strain B728a) Length = 228 Score = 52.4 bits (124), Expect = 3e-06 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 4/190 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + ++I I I R V+G+KG + +L + K+ Sbjct: 38 KVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L + A+S+ +L + RRA ++ M GAKG ++ VS Sbjct: 98 P---VHINIEEIRKPELDGMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ +++G + H + ID A GV+G+KV I G+Q Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYANYEAHTTYGVIGVKVWIFKGEVIGGRQ 212 Query: 662 ---GPATPLP 682 P P P Sbjct: 213 EELKPQAPAP 222
>Q889W5:RS3_PSESM 30S ribosomal protein S3 - Pseudomonas syringae pv. tomato| Length = 228 Score = 52.4 bits (124), Expect = 3e-06 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 4/190 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + ++I I I R V+G+KG + +L + K+ Sbjct: 38 KVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L + A+S+ +L + RRA ++ M GAKG ++ VS Sbjct: 98 P---VHINIEEIRKPELDGMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ +++G + H + ID A GV+G+KV I G+Q Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYANYEAHTTYGVIGVKVWIFKGEVIGGRQ 212 Query: 662 ---GPATPLP 682 P P P Sbjct: 213 EELKPQAPAP 222
>Q3K5Z4:RS3_PSEPF 30S ribosomal protein S3 - Pseudomonas fluorescens (strain PfO-1)| Length = 228 Score = 52.4 bits (124), Expect = 3e-06 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 4/190 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + ++I I I R V+G+KG + +L + K+ Sbjct: 38 KVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L + A+S+ +L + RRA ++ M GAKG ++ VS Sbjct: 98 P---VHINIEEIRKPELDGMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ +++G + H + ID A GV+G+KV I G+Q Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYANYEAHTTYGVIGVKVWIFKGEVIGGRQ 212 Query: 662 ---GPATPLP 682 P P P Sbjct: 213 EELKPQAPAP 222
>Q48D42:RS3_PSE14 30S ribosomal protein S3 - Pseudomonas syringae pv. phaseolicola| (strain 1448A / Race 6) Length = 228 Score = 52.4 bits (124), Expect = 3e-06 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 4/190 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + ++I I I R V+G+KG + +L + K+ Sbjct: 38 KVREYLQDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L + A+S+ +L + RRA ++ M GAKG ++ VS Sbjct: 98 P---VHINIEEIRKPELDGMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ +++G + H + ID A GV+G+KV I G+Q Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYANYEAHTTYGVIGVKVWIFKGEVIGGRQ 212 Query: 662 ---GPATPLP 682 P P P Sbjct: 213 EELKPQAPAP 222
>A1KRH9:RS3_NEIMF 30S ribosomal protein S3 - Neisseria meningitidis serogroup C /| serotype 2a (strain ATCC 700532 / FAM18) Length = 230 Score = 52.4 bits (124), Expect = 3e-06 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 1/180 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L ++L V I I I + R V+G+KG I L +Q Sbjct: 38 DVRNYLRQKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A A+ + +L + RRA ++ M SGAKG +++ S Sbjct: 98 P---VHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A A+S +++G + H + +D A GVLG+KV + + + K + Sbjct: 155 GRLNGADIARSEWYREGRV--PLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSK 212
>P66551:RS3_NEIMB 30S ribosomal protein S3 - Neisseria meningitidis serogroup B| Length = 230 Score = 52.4 bits (124), Expect = 3e-06 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 1/180 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L ++L V I I I + R V+G+KG I L +Q Sbjct: 38 DVRNYLRQKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A A+ + +L + RRA ++ M SGAKG +++ S Sbjct: 98 P---VHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A A+S +++G + H + +D A GVLG+KV + + + K + Sbjct: 155 GRLNGADIARSEWYREGRV--PLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSK 212
>P66550:RS3_NEIMA 30S ribosomal protein S3 - Neisseria meningitidis serogroup A| Length = 230 Score = 52.4 bits (124), Expect = 3e-06 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 1/180 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L ++L V I I I + R V+G+KG I L +Q Sbjct: 38 DVRNYLRQKLANASVGRVVIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A A+ + +L + RRA ++ M SGAKG +++ S Sbjct: 98 P---VHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A A+S +++G + H + +D A GVLG+KV + + + K + Sbjct: 155 GRLNGADIARSEWYREGRV--PLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSK 212
>Q2S918:RS3_HAHCH 30S ribosomal protein S3 - Hahella chejuensis (strain KCTC 2396)| Length = 227 Score = 52.4 bits (124), Expect = 3e-06 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + + V I P +I I R V+G+KG + L V + Sbjct: 38 KVREFLMKKLEKASVSKVIIERPPQNAKITIHTARPGIVIGKKGEDVDRLRQEVGELMKV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A A + +L + RRA ++ M GAKG ++ V Sbjct: 98 P---VHINIEEIRKPDLDAKLVASGVAGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVG 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID A GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYATHEAHTTYGVIGVKVWI 202
>Q9Z7R3:RS3_CHLPN 30S ribosomal protein S3 - Chlamydia pneumoniae (Chlamydophila| pneumoniae) Length = 223 Score = 52.4 bits (124), Expect = 3e-06 Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 8/197 (4%) Frame = +2 Query: 71 ALQISKKRKFVADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNV 241 +L K++F G FL E + + L ++ G AG +R + E+ I+ R V Sbjct: 20 SLWYGNKQEF---GKFLIEDVRIRQFLRKKPSCQGAAGFVVRRMSGKIEVTIQTARPGLV 76 Query: 242 LGEKGRRI----RELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLA 409 +G+KG + EL ++ K V L ++ L A A+++ ++ ++ Sbjct: 77 IGKKGAEVDLLKEELRALTGKE-------VWLEIAEIKRPELNAKLVADNIARQIERRVS 129 Query: 410 VRRACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVR 586 RRA ++ VM++GA G ++ VSG+L A+ A+S +K+G + H + ID A Sbjct: 130 FRRAMKKAMQSVMDAGAVGVKIQVSGRLAGAEIARSEWYKNGRV--PLHTLRADIDYATA 187 Query: 587 HVLLRQGVLGIKVKIML 637 G++GIKV I L Sbjct: 188 CAETTYGIIGIKVWINL 204
>Q8A482:RS3_BACTN 30S ribosomal protein S3 - Bacteroides thetaiotaomicron| Length = 243 Score = 52.4 bits (124), Expect = 3e-06 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 122 AELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 301 +++ + L L + + + I T I + R ++G+ G+ + +L ++K Sbjct: 36 SKIRKYLNARLAKASVSRIVIERTLKLVTITVCTARPGIIIGKGGQEVDKLKEELKK--- 92 Query: 302 FPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 481 D +++ +V L AV A ++ ++ G +A RRA + M GA+G ++ + Sbjct: 93 VTDKDIQINIFEVKRPELDAVIVANNIARQVEGKIAYRRAIKMAIANTMRMGAEGIKIQI 152 Query: 482 SGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 SG+L A+ A+S +K+G + H ID L + G+LGIKV I Sbjct: 153 SGRLNGAEMARSEMYKEGR--TPLHTFRADIDYCHAEALTKVGLLGIKVWI 201
>Q64NL4:RS3_BACFR 30S ribosomal protein S3 - Bacteroides fragilis| Length = 244 Score = 52.4 bits (124), Expect = 3e-06 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 122 AELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 301 +++ + L L + + + I T I + R ++G+ G+ + +L ++K Sbjct: 36 SKIRKYLNARLAKASVSRIVIERTLKLVTITVCTARPGIIIGKGGQEVDKLKEELKK--- 92 Query: 302 FPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 481 D +++ +V L AV A ++ ++ G +A RRA + M GA+G ++ + Sbjct: 93 VTDKDIQINIFEVKRPELDAVIVANNIARQVEGKIAYRRAIKMAIANTMRMGAEGIKIQI 152 Query: 482 SGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 SG+L A+ A+S +K+G + H ID L + G+LGIKV I Sbjct: 153 SGRLNGAEMARSEMYKEGR--TPLHTFRADIDYCHAEALTKVGLLGIKVWI 201
>Q5L8B5:RS3_BACFN 30S ribosomal protein S3 - Bacteroides fragilis (strain ATCC 25285| / NCTC 9343) Length = 244 Score = 52.4 bits (124), Expect = 3e-06 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 1/171 (0%) Frame = +2 Query: 122 AELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 301 +++ + L L + + + I T I + R ++G+ G+ + +L ++K Sbjct: 36 SKIRKYLNARLAKASVSRIVIERTLKLVTITVCTARPGIIIGKGGQEVDKLKEELKK--- 92 Query: 302 FPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 481 D +++ +V L AV A ++ ++ G +A RRA + M GA+G ++ + Sbjct: 93 VTDKDIQINIFEVKRPELDAVIVANNIARQVEGKIAYRRAIKMAIANTMRMGAEGIKIQI 152 Query: 482 SGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 SG+L A+ A+S +K+G + H ID L + G+LGIKV I Sbjct: 153 SGRLNGAEMARSEMYKEGR--TPLHTFRADIDYCHAEALTKVGLLGIKVWI 201
>Q73PM6:RS3_TREDE 30S ribosomal protein S3 - Treponema denticola| Length = 239 Score = 52.0 bits (123), Expect = 4e-06 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 1/153 (0%) Frame = +2 Query: 170 AGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNR 349 A VEI P R I+I R ++G KG I + +++QK+ V++ ++V Sbjct: 55 AEVEIIRHPQRITIMIHTARPGVIIGVKGANIENIGAIIQKKLG---KKVQIKIKEVKRA 111 Query: 350 GLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL-RAQRAKSMKFK 526 L A A+++ +L G + R+ M SGA+G ++ +SG+L A+ +++ + K Sbjct: 112 ELRAALVAQNVARQLAGRASFRKVLKQACFNTMRSGAQGIKIRISGRLGGAEMSRTEEMK 171 Query: 527 DGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +G + H + ID G +G+KV Sbjct: 172 EGRV--PLHTLRADIDYGFAEADTTYGKIGVKV 202
>Q65QW1:RS3_MANSM 30S ribosomal protein S3 - Mannheimia succiniciproducens (strain| MBEL55E) Length = 235 Score = 52.0 bits (123), Expect = 4e-06 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L +EL + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRKFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A A+S+ +L + RRA ++ M GAKG Sbjct: 92 AKIAGVP---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q88XY0:RS3_LACPL 30S ribosomal protein S3 - Lactobacillus plantarum| Length = 217 Score = 52.0 bits (123), Expect = 4e-06 Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 11/190 (5%) Frame = +2 Query: 95 KFVADGVFLAELNEMLT------RELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKG 256 K+ A+ F A LNE L + L + + VEI R I I + V+G+ G Sbjct: 21 KWYAEKDFAAYLNEDLRIRKYIEQRLADASVSTVEIERAANRVNISIHTAKPGMVIGKGG 80 Query: 257 RRI----RELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRAC 424 + +EL ++ KR V + ++ L A ES+ +L G +A RRA Sbjct: 81 SEVEALRKELNNLTGKR-------VHINIIEIKKPDLDAKLVGESIARQLEGRVAFRRAM 133 Query: 425 YGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLR 601 G ++ M SGAKG + V+G+L A ++ + DG + H + ID + Sbjct: 134 RGAMQRTMRSGAKGIKTQVAGRLNGADMSRVEAYSDGTV--PLHTLRADIDYSWVEARTT 191 Query: 602 QGVLGIKVKI 631 G LG+K I Sbjct: 192 YGKLGVKTWI 201
>P44372:RS3_HAEIN 30S ribosomal protein S3 - Haemophilus influenzae| Length = 235 Score = 52.0 bits (123), Expect = 4e-06 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL + + I + I R V+G+KG + +L + V K Sbjct: 38 KVRKFLNKELASASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARSEWYREGRV--PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>Q4QMB6:RS3_HAEI8 30S ribosomal protein S3 - Haemophilus influenzae (strain 86-028NP)| Length = 235 Score = 52.0 bits (123), Expect = 4e-06 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL + + I + I R V+G+KG + +L + V K Sbjct: 38 KVRKFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARSEWYREGRV--PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>O85388:RS3_COXBU 30S ribosomal protein S3 - Coxiella burnetii| Length = 227 Score = 52.0 bits (123), Expect = 4e-06 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 1/199 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + ++L + L + ++I +III + R ++G+KG I L + K P Sbjct: 39 VRQLLQKRLKGAAVSRIQIERPARNAKIIIHSARPGVIIGKKGGEIEALRDEIFKVMKVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E+V L A AE++ +L + RRA ++ + GA G ++ VSG Sbjct: 99 ---VHITIEEVRKPELDAKLVAENIAQQLERRVMFRRAMKRAVQNTLRQGALGVKISVSG 155 Query: 488 KL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQG 664 +L A+ A++ +++G + H ID A G++G+KV W KG+ Sbjct: 156 RLGGAEIARTEWYREGRV--PLHTFRADIDYATASAKTTYGIIGVKV-----WIFKGE-- 206 Query: 665 PATPLPDLVTIHPPKDDDE 721 P P P + ++E Sbjct: 207 VHAPKPQAEEAAPQETEEE 225
>Q6MJ20:RS3_BDEBA 30S ribosomal protein S3 - Bdellovibrio bacteriovorus| Length = 221 Score = 52.0 bits (123), Expect = 4e-06 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 1/169 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 L + L +L G A +E+ + +III R V+G+KG I L + VQK Sbjct: 39 LRKFLKDKLKNAGVAKIEMERAAKKIKIIISTARPGVVIGKKGSGIDALKAEVQK---LT 95 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V L ++V L A AES+ +L ++ RRA + ++ G +G ++ VSG Sbjct: 96 PNEVFLSIQEVRKPDLDAQLVAESIAQQLEKRISWRRALKKSIAAAIKGGVRGIKIRVSG 155 Query: 488 KL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +L A+ A+S + + + H + ID L G++G+KV I Sbjct: 156 RLDGAEIARSEWYNEKSV--PLHTLRADIDYGTAESLTAYGIIGLKVWI 202
>Q8PC44:RS3_XANCP 30S ribosomal protein S3 - Xanthomonas campestris pv. campestris| Length = 244 Score = 51.6 bits (122), Expect = 5e-06 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ EML ++L + G + + I + I R V+G++G I +L V + Sbjct: 38 KVREMLRKKLAQAGISKILIERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSEMMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + +V L A AES+ +L + RRA + M GA G +V V+ Sbjct: 98 P---AHINVTEVRKPELDAQLVAESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID G++GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYGFAEASTTYGIIGIKVWI 202
>Q4URE5:RS3_XANC8 30S ribosomal protein S3 - Xanthomonas campestris pv. campestris| (strain 8004) Length = 244 Score = 51.6 bits (122), Expect = 5e-06 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ EML ++L + G + + I + I R V+G++G I +L V + Sbjct: 38 KVREMLRKKLAQAGISKILIERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSEMMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + +V L A AES+ +L + RRA + M GA G +V V+ Sbjct: 98 P---AHINVTEVRKPELDAQLVAESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID G++GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYGFAEASTTYGIIGIKVWI 202
>Q6LVB0:RS3_PHOPR 30S ribosomal protein S3 - Photobacterium profundum (Photobacterium| sp. (strain SS9)) Length = 229 Score = 51.6 bits (122), Expect = 5e-06 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 1/202 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L +EL + + V I + I R V+G+KG + +L + + Sbjct: 34 DGDF--KVRQFLIKELKKASLSRVVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRAHI 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K P ++ +V L A +S+ +L + RRA ++ M GAKG Sbjct: 92 SKIAGVP---AQINISEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDW 643 +V V G+L A+ A+S +++G + H + ID A + GV+G+KV W Sbjct: 149 IKVQVGGRLGGAEIARSEWYREGRV--PLHTLRADIDYATSSAHTQYGVIGVKV-----W 201 Query: 644 DPKGKQGPATPLPDLVTIHPPK 709 KG+ P+ + P K Sbjct: 202 IFKGEVLGGMPIEEPKADKPKK 223
>Q5F5T3:RS3_NEIG1 30S ribosomal protein S3 - Neisseria gonorrhoeae (strain ATCC| 700825 / FA 1090) Length = 230 Score = 51.6 bits (122), Expect = 5e-06 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 1/180 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L ++L V I I I + R V+G+KG I L +Q Sbjct: 38 DVRNYLRQKLANASVGRVIIERPAKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + + E++ L A A+ + +L + RRA ++ M SGAKG +++ S Sbjct: 98 P---IHVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A A+S +++G + H + +D A GVLG+KV + + + K + Sbjct: 155 GRLNGADIARSEWYREGRV--PLHTLRANVDYATSEAHTTYGVLGLKVWVYTEGNIKSSK 212
>A0RM17:RS3_CAMFF 30S ribosomal protein S3 - Campylobacter fetus subsp. fetus (strain| 82-40) Length = 232 Score = 51.6 bits (122), Expect = 5e-06 Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +L G + + + T + + + A R ++G+KG I L S V K N Sbjct: 38 KIRKFLKTKLYYAGVSQILVERTAKKLRVTVVAARPGIIIGKKGGEIENLRSEVTKLVN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + + E+ G A AE++ +L +A RRA V++ ++GAKG +V V+ Sbjct: 97 KDIAINIKEER--KAGSSAQLAAENVAMQLERRVAFRRAMKKVIQGAQKAGAKGIKVSVA 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ + +G + H + ID G +G+KV I Sbjct: 155 GRLGGAEMARTEWYLEGRV--PLHTLRARIDYGFAEAHTTYGNIGVKVWI 202
>P55827:RS3_ACTAC 30S ribosomal protein S3 - Actinobacillus actinomycetemcomitans| (Haemophilus actinomycetemcomitans) Length = 235 Score = 51.6 bits (122), Expect = 5e-06 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL + + I + I R V+G+KG + +L + V K Sbjct: 38 KVRQFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARSEWYREGRV--PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>Q664S7:RS3_YERPS 30S ribosomal protein S3 - Yersinia pseudotuberculosis| Length = 232 Score = 51.2 bits (121), Expect = 6e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>A4TGZ8:RS3_YERPP 30S ribosomal protein S3 - Yersinia pestis (strain Pestoides F)| Length = 232 Score = 51.2 bits (121), Expect = 6e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q1CCV0:RS3_YERPN 30S ribosomal protein S3 - Yersinia pestis (biovar Antiqua strain| Nepal516) Length = 232 Score = 51.2 bits (121), Expect = 6e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q8ZJA6:RS3_YERPE 30S ribosomal protein S3 - Yersinia pestis| Length = 232 Score = 51.2 bits (121), Expect = 6e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>A1JS29:RS3_YERE8 30S ribosomal protein S3 - Yersinia enterocolitica serotype O:8 /| biotype 1B (strain 8081) Length = 232 Score = 51.2 bits (121), Expect = 6e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q1GK28:RS3_SILST 30S ribosomal protein S3 - Silicibacter sp. (strain TM1040)| Length = 239 Score = 51.2 bits (121), Expect = 6e-06 Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 5/192 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E + E + G A V I + + I R ++G+KG I L +K + Sbjct: 38 KIREFIKEECKQAGVARVIIERPHKKCRVTIHTARPGVIIGKKGADIEVLR---KKIASM 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + L +V L A ES+ +L ++ RRA ++ M GA G V V+ Sbjct: 95 TDSELHLNIVEVRKPELDAQLVGESIAQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVA 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A++ +++G + H + ID A G++GIKV I +++ DP Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYAHSEASTPYGIIGIKVWIFKGEIMEHDP 212 Query: 650 KGKQGPATPLPD 685 + + A L D Sbjct: 213 QARDRKAQELQD 224
>Q8XV18:RS3_RALSO 30S ribosomal protein S3 - Ralstonia solanacearum (Pseudomonas| solanacearum) Length = 264 Score = 51.2 bits (121), Expect = 6e-06 Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 1/168 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ E L ++L V I I I ++R V+G+KG I L + +Q+R Sbjct: 38 EVREFLKKKLKNASVGRVVIERPAKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ + A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEIRKPEVDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 G+L + A++ +++G + H + ID G++G+KV Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGFSEAETTYGIIGVKV 200
>Q46WF0:RS3_RALEJ 30S ribosomal protein S3 - Ralstonia eutropha (strain JMP134)| (Alcaligenes eutrophus) Length = 264 Score = 51.2 bits (121), Expect = 6e-06 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 1/198 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ + L ++L V I I I ++R V+G+KG I L + +Q+R Sbjct: 38 EVRDFLKKKLKNASVGRVVIERPARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L + A++ +++G + H + ID G++G+KV W KG Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGFSEAETTYGIIGVKV-----WVYKGDH 207 Query: 662 GPATPLPDLVTIHPPKDD 715 P + P+DD Sbjct: 208 LGRNDAP---VVEEPQDD 222
>Q3IF19:RS3_PSEHT 30S ribosomal protein S3 - Pseudoalteromonas haloplanktis (strain| TAC 125) Length = 233 Score = 51.2 bits (121), Expect = 6e-06 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 1/186 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ LT+EL + + I + I R V+G+KG + +L V K Sbjct: 38 KVRTFLTKELKTASVSKIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRQAVTKIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+ + +L + RRA ++ M G+KG +V VS Sbjct: 98 P---AQINISEVRKPELDAQLVADGIASQLERRVMFRRAMKRSVQNAMRIGSKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ +++G + H + ID A L G++G+KV W KG+ Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYATSEALTTYGIIGVKV-----WIFKGEV 207 Query: 662 GPATPL 679 PL Sbjct: 208 IGGLPL 213
>Q820R1:RS3_NITEU 30S ribosomal protein S3 - Nitrosomonas europaea| Length = 215 Score = 51.2 bits (121), Expect = 6e-06 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 1/179 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + + L ++L + I +I I +R V+G+KG I L V+K N P Sbjct: 39 VRQYLQKKLAHASVGSIIIERPSKNAKITIHTSRPGVVIGKKGEDIEILRRNVEKLMNVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ + A A S+ +L + RRA ++ M GA+G +++ SG Sbjct: 99 ---VHINIEEIRKPEIDAQLIAASITQQLEKRIMFRRAMKRAIQNAMRLGAQGIKIMSSG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 +L + A++ +++G + H + +D G++G+KV W KG+Q Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRAEVDYGTSEARTTYGIIGVKV-----WVFKGEQ 207
>Q39KG1:RS3_BURS3 30S ribosomal protein S3 - Burkholderia sp. (strain 383)| (Burkholderia cepacia (strain ATCC 17760 / NCIB 9086 / R18194)) Length = 266 Score = 51.2 bits (121), Expect = 6e-06 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I +L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIYSSRPGVVIGKKGEDIEQLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>Q0BJ40:RS3_BURCM 30S ribosomal protein S3 - Burkholderia cepacia (strain ATCC 53795| / AMMD) Length = 266 Score = 51.2 bits (121), Expect = 6e-06 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I +L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIYSSRPGVVIGKKGEDIEQLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>A0K3N1:RS3_BURCH 30S ribosomal protein S3 - Burkholderia cenocepacia (strain HI2424)| Length = 266 Score = 51.2 bits (121), Expect = 6e-06 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I +L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIYSSRPGVVIGKKGEDIEQLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>Q1BRV4:RS3_BURCA 30S ribosomal protein S3 - Burkholderia cenocepacia (strain AU| 1054) Length = 266 Score = 51.2 bits (121), Expect = 6e-06 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I +L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIYSSRPGVVIGKKGEDIEQLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>Q0ABG9:RS3_ALHEH 30S ribosomal protein S3 - Alkalilimnicola ehrlichei (strain| MLHE-1) Length = 226 Score = 51.2 bits (121), Expect = 6e-06 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 1/168 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + ++L + + I + I R V+G+KG I L V + Sbjct: 38 QVRNFIRKKLAHASVSRIRIERPAKNALVTIHTARPGIVIGKKGEDIDRLRGEVARLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ L A AES+ +L + RRA + M GA+G +V VS Sbjct: 98 P---VHINIEEIRKPELDAKLVAESVAQQLERRIMFRRAMKRAVGNAMRLGAQGIKVHVS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 G+L A+ A+S +++G + H + ID V GV+G+KV Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRANIDYGVAEAHTTYGVIGVKV 200
>Q5GWU0:RS3_XANOR 30S ribosomal protein S3 - Xanthomonas oryzae pv. oryzae| Length = 244 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ EML ++L + G + + I + I R V+G++G I +L V + Sbjct: 38 KVREMLRKKLAQAGVSKILIERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSELMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + +V L A AES+ +L + RRA + M GA G +V V+ Sbjct: 98 P---AHINVTEVRKPELDAQLVAESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID G++GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYGFAEASTTYGIIGIKVWI 202
>Q2NZZ1:RS3_XANOM 30S ribosomal protein S3 - Xanthomonas oryzae pv. oryzae (strain| MAFF 311018) Length = 244 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ EML ++L + G + + I + I R V+G++G I +L V + Sbjct: 38 KVREMLRKKLAQAGVSKILIERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSELMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + +V L A AES+ +L + RRA + M GA G +V V+ Sbjct: 98 P---AHINVTEVRKPELDAQLVAESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID G++GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYGFAEASTTYGIIGIKVWI 202
>Q3BWX7:RS3_XANC5 30S ribosomal protein S3 - Xanthomonas campestris pv. vesicatoria| (strain 85-10) Length = 244 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ EML ++L + G + + I + I R V+G++G I +L V + Sbjct: 38 KVREMLRKKLAQAGVSKILIERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSQLMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + +V L A AES+ +L + RRA + M GA G +V V+ Sbjct: 98 P---AHINVTEVRKPELDAQLVAESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID G++GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYGFAEASTTYGIIGIKVWI 202
>Q8PNR9:RS3_XANAC 30S ribosomal protein S3 - Xanthomonas axonopodis pv. citri| Length = 244 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ EML ++L + G + + I + I R V+G++G I +L V + Sbjct: 38 KVREMLRKKLAQAGVSKILIERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSELMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P + +V L A AES+ +L + RRA + M GA G +V V+ Sbjct: 98 P---AHINVTEVRKPELDAQLVAESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID G++GIKV I Sbjct: 155 GRLNGAEIARSEWYREGRV--PLHTLRADIDYGFAEASTTYGIIGIKVWI 202
>Q30TV8:RS3_THIDN 30S ribosomal protein S3 - Thiomicrospira denitrificans (strain| ATCC 33889 / DSM 1351) Length = 241 Score = 50.8 bits (120), Expect = 8e-06 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L +EL G + + I T R + I A R ++G+KG I +L +Q Sbjct: 38 KIRTYLKKELYYAGVSNIVIERTAKRLRVTIIAARPGIIIGKKGSDIEKLKDTLQALVGK 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + EK + + AE++ +L +A RRA V++ GAKG +V VS Sbjct: 98 PLS-VNIKEEKKAQ--ISSQLVAENVATQLERRVAFRRAMKKVMQNAQRGGAKGIKVSVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ + +G + H + ID G +G+KV I Sbjct: 155 GRLGGAEMARTEWYLEGRV--PLHTLRAKIDYGFAEAHTTYGCIGVKVWI 202
>Q3YWU5:RS3_SHISS 30S ribosomal protein S3 - Shigella sonnei (strain Ss046)| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>P59184:RS3_SHIFL 30S ribosomal protein S3 - Shigella flexneri| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q0SZY8:RS3_SHIF8 30S ribosomal protein S3 - Shigella flexneri serotype 5b (strain| 8401) Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q32B37:RS3_SHIDS 30S ribosomal protein S3 - Shigella dysenteriae serotype 1 (strain| Sd197) Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q31VW2:RS3_SHIBS 30S ribosomal protein S3 - Shigella boydii serotype 4 (strain| Sb227) Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>A3Q988:RS3_SHELP 30S ribosomal protein S3 - Shewanella loihica (strain BAA-1088 /| PV-4) Length = 229 Score = 50.8 bits (120), Expect = 8e-06 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 1/168 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ + L ++L + + + I + I R V+G+KG + +L + V K Sbjct: 38 EVRKFLEKKLKQASVSKIVIERPAKSVRVTIHTARPGVVIGKKGEDVEKLRNEVAKLTGI 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ ++ L A AE + +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEIRKPELDAKLVAEGIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 G+L A+ A+S +++G + H + ID + + GV+G+KV Sbjct: 155 GRLGGAEIARSEWYREGRV--PLHTLRADIDYSTAESHTQYGVIGVKV 200
>P0A7V6:RS3_SALTY 30S ribosomal protein S3 - Salmonella typhimurium| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>P0A7V7:RS3_SALTI 30S ribosomal protein S3 - Salmonella typhi| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q5PIV8:RS3_SALPA 30S ribosomal protein S3 - Salmonella paratyphi-a| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q57J38:RS3_SALCH 30S ribosomal protein S3 - Salmonella choleraesuis| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q1LI43:RS3_RALME 30S ribosomal protein S3 - Ralstonia metallidurans (strain CH34 /| ATCC 43123 / DSM 2839) Length = 265 Score = 50.8 bits (120), Expect = 8e-06 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 1/198 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ E L ++L V I I I ++R V+G+KG I L + +Q+R Sbjct: 38 EVREFLKKKLKNASVGRVVIERPARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L + A++ +++G + H + ID G++G+KV W KG Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGFSEAETTYGIIGVKV-----WVYKGDH 207 Query: 662 GPATPLPDLVTIHPPKDD 715 P + P++D Sbjct: 208 LGRNDAP---VVEEPQED 222
>Q4A5C7:RS3_MYCS5 30S ribosomal protein S3 - Mycoplasma synoviae (strain 53)| Length = 226 Score = 50.8 bits (120), Expect = 8e-06 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 1/147 (0%) Frame = +2 Query: 200 RTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAES 379 + + + ++ +LGE G I+ LT +QK V L + L A AE Sbjct: 64 KVSVFLHTSKPAAILGENGTNIKNLTVALQKHLKNKKLDVNLKVLTIKEPDLNARLLAEM 123 Query: 380 LRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHP 556 + KL + R A +R +++GAKG + VSG+L A++ + +G M H Sbjct: 124 IATKLENRESFRSAQKIAIRSALKAGAKGIKTAVSGRLNGVDMARTEGYSEGEM--KLHT 181 Query: 557 VNQYIDGAVRHVLLRQGVLGIKVKIML 637 + Q + A G +G+KV + L Sbjct: 182 LRQDVSYATATARTTYGAIGVKVWVSL 208
>P56010:RS3_HELPY 30S ribosomal protein S3 - Helicobacter pylori (Campylobacter| pylori) Length = 234 Score = 50.8 bits (120), Expect = 8e-06 Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 5/174 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE----LTSVVQK 292 ++ + L +EL G + + I + + + A R ++G+KG I + L ++++K Sbjct: 38 KIRKFLKKELYYAGVSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKDGLKTLIKK 97 Query: 293 RFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 472 V + ++V + A AE++ +L +A RRA V++ ++SGAKG + Sbjct: 98 E-------VSINIKEVKHPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALKSGAKGIK 150 Query: 473 VIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 V VSG+L A+ A++ + +G + H + ID + G++G+KV I Sbjct: 151 VCVSGRLAGAEIARTEWYMEGRV--PLHTLRAKIDYGFAEAMTVYGIIGVKVWI 202
>Q1R612:RS3_ECOUT 30S ribosomal protein S3 - Escherichia coli (strain UTI89 / UPEC)| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>P0A7V3:RS3_ECOLI 30S ribosomal protein S3 - Escherichia coli| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>P0A7V4:RS3_ECOL6 30S ribosomal protein S3 - Escherichia coli O6| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q0TCE7:RS3_ECOL5 30S ribosomal protein S3 - Escherichia coli O6:K15:H31 (strain 536| / UPEC) Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>A1AGK2:RS3_ECOK1 30S ribosomal protein S3 - Escherichia coli O1:K1 / APEC| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>P0A7V5:RS3_ECO57 30S ribosomal protein S3 - Escherichia coli O157:H7| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q5HS96:RS3_CAMJR 30S ribosomal protein S3 - Campylobacter jejuni (strain RM1221)| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L R+L G + + + T + + + A R ++G+KG + L +Q Sbjct: 38 KIRAFLKRKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIG- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + + E+ G A AES+ +L +A RRA V++ ++GAKG +V VS Sbjct: 97 KDVNINIKEER--KAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ + +G + H + ID G +G+KV I Sbjct: 155 GRLGGAEMARTEWYLEGRV--PLHTLRAKIDYGFAEARTTYGNIGVKVWI 202
>A1W1V4:RS3_CAMJJ 30S ribosomal protein S3 - Campylobacter jejuni subsp. jejuni| serotype O:23/36 (strain 81-176) Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L R+L G + + + T + + + A R ++G+KG + L +Q Sbjct: 38 KIRAFLKRKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIG- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + + E+ G A AES+ +L +A RRA V++ ++GAKG +V VS Sbjct: 97 KDVNINIKEER--KAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ + +G + H + ID G +G+KV I Sbjct: 155 GRLGGAEMARTEWYLEGRV--PLHTLRAKIDYGFAEARTTYGNIGVKVWI 202
>Q9PLX7:RS3_CAMJE 30S ribosomal protein S3 - Campylobacter jejuni| Length = 233 Score = 50.8 bits (120), Expect = 8e-06 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L R+L G + + + T + + + A R ++G+KG + L +Q Sbjct: 38 KIRAFLKRKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIG- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + + E+ G A AES+ +L +A RRA V++ ++GAKG +V VS Sbjct: 97 KDVNINIKEER--KAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ + +G + H + ID G +G+KV I Sbjct: 155 GRLGGAEMARTEWYLEGRV--PLHTLRAKIDYGFAEARTTYGNIGVKVWI 202
>A0KF27:RS3_AERHH 30S ribosomal protein S3 - Aeromonas hydrophila subsp. hydrophila| (strain ATCC 7966 / NCIB 9240) Length = 237 Score = 50.8 bits (120), Expect = 8e-06 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + I + I R V+G+KG + +L V Sbjct: 38 QVRQFLTKELKNASLSKITIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRKAVAAIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINISEVRKPELDGKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID A GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYATSEAHTTYGVIGVKVWI 202
>A3N364:RS3_ACTP2 30S ribosomal protein S3 - Actinobacillus pleuropneumoniae serotype| 5b (strain L20) Length = 235 Score = 50.8 bits (120), Expect = 8e-06 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L +EL + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRKFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 + P ++ +V L A A+S+ +L + RRA ++ M GAKG Sbjct: 92 SQIAGVP---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>Q1C2V3:RS3_YERPA 30S ribosomal protein S3 - Yersinia pestis (biovar Antiqua strain| Antiqua) Length = 232 Score = 50.4 bits (119), Expect = 1e-05 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSIISQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>Q2NQM8:RS3_SODGM 30S ribosomal protein S3 - Sodalis glossinidius (strain morsitans)| Length = 232 Score = 50.4 bits (119), Expect = 1e-05 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRQFLTKELSKASVSRLVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSISSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>A1SNL2:RS3_NOCSJ 30S ribosomal protein S3 - Nocardioides sp. (strain BAA-499 /| JS614) Length = 278 Score = 50.4 bits (119), Expect = 1e-05 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 7/195 (3%) Frame = +2 Query: 68 MALQISKKRKFVADGVFLAELNE------MLTRELGEDGFAGVEIRVTPMRTEIIIRATR 229 + + K ++ AD ++ + + E +L++ + G A VEI T R + I R Sbjct: 12 LGISTDHKSRWYADKLYKSYVGEDVAIRKLLSKGMERAGIAKVEIERTRDRVRVDIHTAR 71 Query: 230 TQNVLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLA 409 V+G +G + ++K V+L +V N + A A+ + +L G + Sbjct: 72 PGIVIGRRGAEADRIRGELEK---LTGKQVQLNILEVKNPEVDAQLVAQGVAEQLSGRVQ 128 Query: 410 VRRACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVR 586 RRA ++ M SGAKG + SG+L A+ +++ +++G + H + ID Sbjct: 129 FRRAMRKAMQTSMRSGAKGIRIQCSGRLNGAEMSRTEFYREGRV--PLHTLRADIDYGFY 186 Query: 587 HVLLRQGVLGIKVKI 631 G +G+KV I Sbjct: 187 EARTTFGRIGVKVWI 201
>Q13TH6:RS3_BURXL 30S ribosomal protein S3 - Burkholderia xenovorans (strain LB400)| Length = 268 Score = 50.4 bits (119), Expect = 1e-05 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I L S +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIYSSRPGVVIGKKGEDIELLKSELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>A4ST00:RS3_AERS4 30S ribosomal protein S3 - Aeromonas salmonicida (strain A449)| Length = 236 Score = 50.4 bits (119), Expect = 1e-05 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + I + I R V+G+KG + +L V Sbjct: 38 QVRQFLTKELKNASLSKITIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRKAVAVITGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINISEVRKPELDGKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID A GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYATSEAHTTYGVIGVKVWI 202
>A0LRM6:RS3_ACIC1 30S ribosomal protein S3 - Acidothermus cellulolyticus (strain ATCC| 43068 / 11B) Length = 341 Score = 50.4 bits (119), Expect = 1e-05 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 1/169 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + M+TR + G + VEI T R + I R V+G +G + + ++K N Sbjct: 38 IRRMMTRGMERAGISRVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRADLEKLTNKQ 97 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V+L +V N + A A+ + +L ++ RRA L+ +++GAKG V V+G Sbjct: 98 ---VQLNILEVKNPEIDAQLVAQGVAEQLSQRVSFRRAMRKALQSALKAGAKGVRVQVAG 154 Query: 488 KL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +L A+ +++ +++G + H + ID G +G+KV I Sbjct: 155 RLGGAEMSRTEFYREGRV--PLHTLRADIDYGFYEARTTFGRIGVKVWI 201
>A1TJ13:RS3_ACIAC 30S ribosomal protein S3 - Acidovorax avenae subsp. citrulli| (strain AAC00-1) Length = 293 Score = 50.4 bits (119), Expect = 1e-05 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 1/197 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + + I I I + R V+G+KG I L + R Sbjct: 38 KVREYLKAKLKNAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIENLKKELASRLGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L + A++ +++G + H + ID GV+G+KV W KG Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGTSEAFTTYGVIGLKV-----WVYKGDT 207 Query: 662 GPATPLPDLVTIHPPKD 712 LP + T P ++ Sbjct: 208 LGRNDLPAVETPRPEEE 224
>Q0K625:RS3_RALEH 30S ribosomal protein S3 - Ralstonia eutropha (strain ATCC 17699 /| H16 / DSM 428 / Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) Length = 265 Score = 50.1 bits (118), Expect = 1e-05 Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 1/198 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ + L ++L V I I I ++R V+G+KG I L + +Q+R Sbjct: 38 EVRDFLKKKLKNASVGRVVIERPARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E++ A A+S+ +L + RRA ++ M GA+G +++ + Sbjct: 98 P---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSA 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L + A++ +++G + H + ID G++G+KV W KG Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGFSEAETTYGIIGVKV-----WVYKGDH 207 Query: 662 GPATPLPDLVTIHPPKDD 715 P + P+DD Sbjct: 208 LGRNDAP---VVEEPQDD 222
>Q9CL37:RS3_PASMU 30S ribosomal protein S3 - Pasteurella multocida| Length = 235 Score = 50.1 bits (118), Expect = 1e-05 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L +EL + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRKFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 P ++ +V L A A+S+ +L + RRA ++ M GAKG Sbjct: 92 AAIAGVP---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID GV+GIKV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYNTAEAHTTYGVIGIKVWI 202
>A1TYK3:RS3_MARAV 30S ribosomal protein S3 - Marinobacter aquaeolei (strain ATCC| 700491 / DSM 11845 / VT8) (Marinobacter hydrocarbonoclasticus (strain DSM 11845)) Length = 227 Score = 50.1 bits (118), Expect = 1e-05 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L + L + + + I I I R V+G+KG + L V Sbjct: 38 QVREFLDKRLVKASVSKIVIERPAQNARITIHTARPGIVIGKKGEDVDRLRREVSDMMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V L A A+++ +L + RRA ++ M GAKG ++ V Sbjct: 98 P---VHINIEEVRKPDLDARLVAQNVAGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVG 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+S +++G + H + ID A GV+G+KV I Sbjct: 155 GRLGGAEIARSEWYREGRV--PLHTLRADIDYATYEAHTTYGVIGVKVWI 202
>Q9ZJR9:RS3_HELPJ 30S ribosomal protein S3 - Helicobacter pylori J99 (Campylobacter| pylori J99) Length = 234 Score = 50.1 bits (118), Expect = 1e-05 Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 5/174 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKG---RRIRE-LTSVVQK 292 ++ + L +EL G + + I + + + A R ++G+KG +++E L ++++K Sbjct: 38 KIRKFLKKELYYAGVSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKK 97 Query: 293 RFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 472 V + ++V A AE++ +L +A RRA V++ ++SGAKG + Sbjct: 98 E-------VSINIKEVKRPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALKSGAKGIK 150 Query: 473 VIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 V VSG+L A+ A++ + +G + H + ID + G++G+KV I Sbjct: 151 VRVSGRLAGAEIARTEWYMEGRV--PLHTLRAKIDYGFAEAMTVYGIIGVKVWI 202
>Q1CRU7:RS3_HELPH 30S ribosomal protein S3 - Helicobacter pylori (strain HPAG1)| Length = 234 Score = 50.1 bits (118), Expect = 1e-05 Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 5/174 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKG---RRIRE-LTSVVQK 292 ++ + L +EL G + + I + + + A R ++G+KG +++E L ++++K Sbjct: 38 KIRKFLKKELYYAGVSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKK 97 Query: 293 RFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 472 V + ++V A AE++ +L +A RRA V++ ++SGAKG + Sbjct: 98 E-------VSINIKEVKRPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALKSGAKGIK 150 Query: 473 VIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 V VSG+L A+ A++ + +G + H + ID + G++G+KV I Sbjct: 151 VRVSGRLAGAEIARTEWYMEGRV--PLHTLRAKIDYGFAEAMTVYGIIGVKVWI 202
>Q17ZD2:RS3_HELAH 30S ribosomal protein S3 - Helicobacter acinonychis (strain Sheeba)| Length = 234 Score = 50.1 bits (118), Expect = 1e-05 Identities = 45/174 (25%), Positives = 88/174 (50%), Gaps = 5/174 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKG---RRIRE-LTSVVQK 292 ++ + L +EL G + + I + + + A R ++G+KG +++E L ++++K Sbjct: 38 KIRKFLKKELYYAGVSQIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKK 97 Query: 293 RFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCE 472 V + ++V A AE++ +L +A RRA V++ ++SGAKG + Sbjct: 98 E-------VSINIKEVKRPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALKSGAKGVK 150 Query: 473 VIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 V VSG+L A+ A++ + +G + H + ID + G++G+KV I Sbjct: 151 VRVSGRLAGAEIARTEWYMEGRV--PLHTLRAKIDYGFAEAMTVYGIIGVKVWI 202
>Q7VKD7:RS3_HAEDU 30S ribosomal protein S3 - Haemophilus ducreyi| Length = 234 Score = 50.1 bits (118), Expect = 1e-05 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 1/176 (0%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L +EL + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRKFLNKELANASVSRIIIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 + P ++ +V L A A+S+ +L + RRA ++ M GAKG Sbjct: 92 SQIAGVP---AQINIAEVKKPELDAKLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 +V VSG+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYNTAEAHTTYGVIGVKVWI 202
>Q487Z9:RS3_COLP3 30S ribosomal protein S3 - Colwellia psychrerythraea (strain 34H /| ATCC BAA-681) (Vibrio psychroerythus) Length = 231 Score = 50.1 bits (118), Expect = 1e-05 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 1/196 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + V I + I R V+G+KG + +L V K Sbjct: 38 KVREFLKEKLKRASLSKVVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRLAVSKIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V + A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPEMDAQLVADSIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A A++ +++G + H + ID A+ GV+GIKV W KG+ Sbjct: 155 GRLGGADIARAEWYREGRV--PLHTLRADIDYAIARGNTTYGVIGIKV-----WIFKGEI 207 Query: 662 GPATPLPDLVTIHPPK 709 PL V PK Sbjct: 208 IGNMPLQAEVPAAKPK 223
>Q2IJ82:RS3_ANADE 30S ribosomal protein S3 - Anaeromyxobacter dehalogenans (strain| 2CP-C) Length = 224 Score = 50.1 bits (118), Expect = 1e-05 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 +L E + +LG+ G + +EI + +I + R V+G++G I + +Q Sbjct: 37 KLREFVKEKLGQAGISRIEIERAANKVKINVHTARPGIVIGKRGAGIETIKKDLQ---GL 93 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D V L +V A AE++ +L +A RRA ++ ++ GAKG V S Sbjct: 94 TDNEVYLNVVEVRKAETDAQLVAENIATQLERRIAFRRAMKKSVQTALKFGAKGIRVACS 153 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIM 634 G+L ++ A+ +++G + H + ID G +G KV IM Sbjct: 154 GRLGGSEMARYEWYREGRV--PLHTLRADIDYGFAEAKTTYGKIGCKVWIM 202
>Q01W98:RS3_SOLUE 30S ribosomal protein S3 - Solibacter usitatus (strain Ellin6076)| Length = 344 Score = 49.7 bits (117), Expect = 2e-05 Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 1/204 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 EL L L G + +E+ + + IR +R ++G KG I +L + K+ Sbjct: 37 ELKAALRERLKSAGVSSIEVDRPGNKLRVTIRTSRPGIIIGRKGAEIEKLKQDMAKKTKR 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + ++V L A +ES+ +L +A RRA + + G KG +V VS Sbjct: 97 E---VFIDIQEVHKPELDAQLVSESIALQLEKRVAFRRAMRKAVDSALRFGCKGIKVRVS 153 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A+S + G + H + ID GV+GIK W KG+ Sbjct: 154 GRLNGAEIARSEWYLQGQL--PLHTLRADIDYGFAEAHTTYGVIGIKA-----WLYKGEI 206 Query: 662 GPATPLPDLVTIHPPKDDDEFLRP 733 T +L+ P+ + RP Sbjct: 207 LDLTKRRNLLPEPEPRREQRRDRP 230
>Q1AU35:RS3_RUBXD 30S ribosomal protein S3 - Rubrobacter xylanophilus (strain DSM| 9941 / NBRC 16129) Length = 218 Score = 49.7 bits (117), Expect = 2e-05 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 7/176 (3%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEII--IRATRTQNVLGEKGRRI----RELTSVV 286 ++ E + R+L G A +EI+ + E++ I R V+G+ G + R+L + Sbjct: 42 KIREHIERKLARAGIAEIEIKKAAEQGEVVVDIHTARPGIVIGKGGSEVDALRRDLERLT 101 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 K+ V++ +V L A AES+ +L G A RR L M SGA G Sbjct: 102 SKK-------VQVNVREVSRPELNAKLVAESIAEQLEGRAAFRRTMKRALTSAMRSGAVG 154 Query: 467 CEVIVSGKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 + SG+L + ++S +G + H ++ ID + + G +G+KV I Sbjct: 155 ARIQCSGRLGGIEMSRSETVSEGKV--PLHTLDADIDYGFKEANTQMGQIGVKVWI 208
>Q7MYF7:RS3_PHOLL 30S ribosomal protein S3 - Photorhabdus luminescens subsp.| laumondii Length = 233 Score = 49.7 bits (117), Expect = 2e-05 Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL + + + I + I R V+G+KG + +L V + Sbjct: 38 KVRQYLKKELAKASISRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKTVAEIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINISEVRKPELDAKLVADSITSQLERRIMFRRAMKRAVQNAMRQGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A+ +++G + H + ID GVLG+KV I Sbjct: 155 GRLGGAEIARPEWYREGRV--PLHTLRADIDYNTSEAHTTYGVLGVKVWI 202
>Q1D769:RS3_MYXXD 30S ribosomal protein S3 - Myxococcus xanthus (strain DK 1622)| Length = 220 Score = 49.7 bits (117), Expect = 2e-05 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 1/186 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E + + L G + VEI + ++ + R V+G++G I + +Q+ F Sbjct: 38 IREFVKKSLNHAGVSKVEIERAANKVKVNVHTARPGIVIGKRGAGIETVKKDLQQ---FT 94 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V L +V A AE++ +L +A RRA L+ M+ GAKG V SG Sbjct: 95 KNEVFLNIVEVRKAETDAQLVAENIATQLERRIAFRRAMKKALQTAMKFGAKGIRVACSG 154 Query: 488 KL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQG 664 +L A+ A+ +++G + H + ID G +G KV + GK G Sbjct: 155 RLGGAEMARYEWYREGRV--PLHTLRADIDYGFAEAKTTYGKIGCKVWVCKGEVLPGKGG 212 Query: 665 PATPLP 682 A P+P Sbjct: 213 QA-PMP 217
>Q0I157:RS3_HAES1 30S ribosomal protein S3 - Haemophilus somnus (strain 129Pt)| (Histophilus somni (strain 129Pt)) Length = 235 Score = 49.7 bits (117), Expect = 2e-05 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 9/199 (4%) Frame = +2 Query: 107 DGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVV 286 DG F ++ + L +EL + + I + I R V+G+KG + +L + V Sbjct: 34 DGDF--KVRQFLNKELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAV 91 Query: 287 QKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKG 466 P ++ +V L A A S+ +L + RRA ++ M GAKG Sbjct: 92 AAIAGVP---AQINIAEVKKPELDAKLVAGSIASQLERRVMFRRAMKKAVQNAMRLGAKG 148 Query: 467 CEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI---- 631 +V VSG+L A+ A+S +++G + H + ID GV+G+KV I Sbjct: 149 IKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGE 206 Query: 632 ----MLDWDPKGKQGPATP 676 M + +Q PATP Sbjct: 207 ILGGMAAIAQQPEQQPATP 225
>Q748Z4:RS3_GEOSL 30S ribosomal protein S3 - Geobacter sulfurreducens| Length = 211 Score = 49.7 bits (117), Expect = 2e-05 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 +L L + L G + +EI + +I I R ++G+KG + L + K Sbjct: 37 KLRNFLKKRLYNSGVSKIEIERAANKAKINIYTARPGLIIGKKGAEVETLKKELAK---L 93 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + L ++V L A AE++ +L +A RRA + ++ GAKG + S Sbjct: 94 TDKEIYLNIQEVRKPELDAQLVAENVALQLERRVAFRRAMKKSVTSSLKFGAKGIRITCS 153 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ +++ +++G + H + ID G++G+KV I Sbjct: 154 GRLGGAEMSRTEWYREGRV--PLHTLRADIDYGFAEAKTTYGIIGVKVLI 201
>Q6CZX6:RS3_ERWCT 30S ribosomal protein S3 - Erwinia carotovora subsp. atroseptica| (Pectobacterium atrosepticum) Length = 233 Score = 49.7 bits (117), Expect = 2e-05 Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+EL + + + I + I R V+G+KG + +L VV Sbjct: 38 KVRKYLTKELEKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
>A1KB21:RS3_AZOSB 30S ribosomal protein S3 - Azoarcus sp. (strain BH72)| Length = 260 Score = 49.7 bits (117), Expect = 2e-05 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 1/168 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L + L V I + + + R V+G+KG I L +QK Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 G+L A+ A++ +++G + H + ID V GV+GIKV Sbjct: 155 GRLNGAEIARTEWYREGRV--PLHTLRANIDYGVSEAQTTYGVIGIKV 200
>Q15YN3:RS3_PSEA6 30S ribosomal protein S3 - Pseudoalteromonas atlantica (strain T6c| / BAA-1087) Length = 232 Score = 49.3 bits (116), Expect = 2e-05 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 5/189 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + LT+ L + + I + I R V+G+KG + +L V K Sbjct: 38 QVRQYLTKALKTASLSKIVIERPAKSIRVTIHTARPGVVIGKKGEDVEKLRKHVSKLAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 98 P---AQINIAEVRKPELDGQLVADSIASQLERRVMFRRAMKRAVQNAMRIGAKGIKVQVS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A++ +++G + H ID A G++G+KV I +L P Sbjct: 155 GRLGGAEIARAEWYREGRV--PLHTFRADIDYATSEANTTYGIIGVKVWIFKGEVLGGLP 212 Query: 650 KGKQGPATP 676 ++ PA P Sbjct: 213 LTQEQPAQP 221
>Q39Y00:RS3_GEOMG 30S ribosomal protein S3 - Geobacter metallireducens (strain GS-15| / ATCC 53774 / DSM 7210) Length = 211 Score = 49.3 bits (116), Expect = 2e-05 Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 +L L + L G + +EI + +I I R ++G+KG + L + K Sbjct: 37 KLRNFLKKRLFNSGVSKIEIERAASKAKINIFTARPGLIIGKKGAEVETLKKELAK---L 93 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 D + L ++V L A +E++ +L +A RRA + ++ GAKG + S Sbjct: 94 TDKEIYLNIQEVRKPELDAQLVSENVALQLERRVAFRRAMKKSVTSALKFGAKGIRITCS 153 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ +++ +++G + H + ID G++G+KV I Sbjct: 154 GRLGGAEMSRTEWYREGRV--PLHTLRADIDYGFAEAKTTYGIIGVKVLI 201
>Q2N9B7:RS3_ERYLH 30S ribosomal protein S3 - Erythrobacter litoralis (strain| HTCC2594) Length = 231 Score = 49.3 bits (116), Expect = 2e-05 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 1/168 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 E+ + + + + V I I I A R ++G+KG I +L QK Sbjct: 38 EIRKYILETAAQAAISKVVIERPAKLCRISIYAARPGVIIGKKGADIEKLR---QKLSTM 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 + V+L ++ + A A+ + +L+ +A RRA ++ M GA+G +++ Sbjct: 95 TESEVKLNIVEIRKPEIDAKLVAQGIADQLIRRVAFRRAMKRAMQSAMRLGAEGIKIVCG 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 G+L A+ A+ ++++G + H + ID A L G++GIKV Sbjct: 155 GRLGGAEIARVEQYREGRV--PLHTLRANIDYAEAEALTAYGIIGIKV 200
>Q3APH9:RS3_CHLCH 30S ribosomal protein S3 - Chlorobium chlorochromatii (strain CaD3)| Length = 253 Score = 49.3 bits (116), Expect = 2e-05 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 5/170 (2%) Frame = +2 Query: 164 GFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI----RELTSVVQKRFNFPDGGVELYA 331 G A + I T +I I A R V+G KG I +EL+ ++ K V++ Sbjct: 53 GIARINIERTTKHVKINIYAARPGAVVGRKGEEINNLSQELSRIIGKE-------VKIDV 105 Query: 332 EKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL-RAQRA 508 +V+ + A E++ Y+L ++ RRA ++ M +GA+G + +G+L A+ A Sbjct: 106 VEVIKPEIEAQLIGENIAYQLENRVSFRRAMKQAIQQAMRAGAEGVRIRCAGRLGGAEIA 165 Query: 509 KSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGK 658 ++ ++K+G + H + +D A G +GIKV W KG+ Sbjct: 166 RAEQYKEGKI--PLHTIRANVDYASVTAHTIAGTIGIKV-----WVYKGE 208
>P46172:RS3_BUCAK 30S ribosomal protein S3 - Buchnera aphidicola subsp. Acyrthosiphon| kondoi (Acyrthosiphon kondoi symbiotic bacterium) Length = 205 Score = 49.3 bits (116), Expect = 2e-05 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL + + + I + I R V+G+KG + +L VV Sbjct: 11 KVRQFLAKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV 70 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A A+S+ +L + RRA ++ M GAKG +V VS Sbjct: 71 P---AQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVDVS 127 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID GV+G+KV I Sbjct: 128 GRLGGAEIARTEWYREGRV--PLHTLRADIDYNTSEAHTTYGVIGVKVWI 175
>A1WHD1:RS3_VEREI 30S ribosomal protein S3 - Verminephrobacter eiseniae (strain| EF01-2) Length = 294 Score = 48.9 bits (115), Expect = 3e-05 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 1/200 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + + I I I + R V+G+KG I L + R Sbjct: 38 KVREYLKTKLKNAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIESLKKELAVRLGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L + A+ +++G + H + ID GV+G+KV + + Sbjct: 155 GRLNGIEIARCEWYREGRV--PLHTLRADIDYGTSEAKTTYGVIGVKVWVY--------K 204 Query: 662 GPATPLPDLVTIHPPKDDDE 721 G DL + P+ D+E Sbjct: 205 GDTLGRNDLPAVETPRPDEE 224
>Q2S3Q8:RS3_SALRD 30S ribosomal protein S3 - Salinibacter ruber (strain DSM 13855)| Length = 236 Score = 48.9 bits (115), Expect = 3e-05 Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 1/191 (0%) Frame = +2 Query: 62 SNMALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNV 241 SN + + + K V D EL L L G + I TP R + + +R V Sbjct: 20 SNWYSETNFQDKLVED----EELRRYLHTRLKRAGLSRAVIERTPERVILTLHTSRPGVV 75 Query: 242 LGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRA 421 +G G + +L ++ +++ ++ L A A+++ +L G ++ RRA Sbjct: 76 IGRGGSEVEKLKGELE---TLTGKDIQINISEIKRPELDATLVAKNIVQQLEGRISFRRA 132 Query: 422 CYGVLRFVMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLL 598 ++ M GA+G + +G+L A+ ++ ++ +G + H + ID A L Sbjct: 133 MKQAMQAAMRMGAEGVRIRAAGRLGGAEMGRTEEYMEGRV--PLHTIRADIDFAQETALT 190 Query: 599 RQGVLGIKVKI 631 G +G+KV I Sbjct: 191 IYGTIGVKVWI 201
>Q3J5R6:RS3_RHOS4 30S ribosomal protein S3 - Rhodobacter sphaeroides (strain ATCC| 17023 / 2.4.1 / NCIB 8253 / DSM 158) Length = 238 Score = 48.9 bits (115), Expect = 3e-05 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 5/226 (2%) Frame = +2 Query: 59 FSNMALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQN 238 + N+ L+ K R+F+ D A G + V I + + I R Sbjct: 29 YGNLLLEDLKMREFIHDYAKQA-------------GVSKVIIERPHRKCRVTIHTARPGV 75 Query: 239 VLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRR 418 ++G+KG I L +K F + L ++ L A AES+ ++ ++ RR Sbjct: 76 IIGKKGADIETLR---KKLSAFTKSELHLNIVEIRKPELDAQLVAESIAQQMERRVSFRR 132 Query: 419 ACYGVLRFVMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVL 595 A ++ M GA G V VSG+L A+ A++ +++G + H + ID A Sbjct: 133 AMKRGVQNAMRIGALGIRVNVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYATSEAT 190 Query: 596 LRQGVLGIKVKI----MLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 G++G+KV I +L+ DP+ + + PP+ D E Sbjct: 191 TPYGIIGVKVWIFKGEILEHDPQAHDRRHSEAQEGAAPRPPRRDRE 236
>A3PGL7:RS3_RHOS1 30S ribosomal protein S3 - Rhodobacter sphaeroides (strain ATCC| 17029 / ATH 2.4.9) Length = 238 Score = 48.9 bits (115), Expect = 3e-05 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 5/226 (2%) Frame = +2 Query: 59 FSNMALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQN 238 + N+ L+ K R+F+ D A G + V I + + I R Sbjct: 29 YGNLLLEDLKMREFIHDYAKQA-------------GVSKVIIERPHRKCRVTIHTARPGV 75 Query: 239 VLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRR 418 ++G+KG I L +K F + L ++ L A AES+ ++ ++ RR Sbjct: 76 IIGKKGADIETLR---KKLSAFTKSELHLNIVEIRKPELDAQLVAESIAQQMERRVSFRR 132 Query: 419 ACYGVLRFVMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVL 595 A ++ M GA G V VSG+L A+ A++ +++G + H + ID A Sbjct: 133 AMKRGVQNAMRIGALGIRVNVSGRLGGAEIARTEWYREGRV--PLHTLRADIDYATSEAT 190 Query: 596 LRQGVLGIKVKI----MLDWDPKGKQGPATPLPDLVTIHPPKDDDE 721 G++G+KV I +L+ DP+ + + PP+ D E Sbjct: 191 TPYGIIGVKVWIFKGEILEHDPQAHDRRHSEAQEGAAPRPPRRDRE 236
>A2BTD1:RS3_PROMS 30S ribosomal protein S3 - Prochlorococcus marinus (strain AS9601)| Length = 243 Score = 48.9 bits (115), Expect = 3e-05 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 1/182 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + ++ G G + V I + E+ ++ R ++G +G I EL S +QK Sbjct: 38 KIRTFIQKKYGAAGISDVLIARKADQLELELKTARPGVIVGRQGSGIEELRSGIQKTIGD 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + +V A AE + +L +A RR L+ +G G ++ V Sbjct: 98 RTRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMALQRAQRAGVLGLKIQVG 157 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ ++G + H + ID A R GVLGIKV W KG+ Sbjct: 158 GRLNGAEIARTEWTREGRVPL--HTLRAEIDYATREANTTYGVLGIKV-----WVFKGEV 210 Query: 662 GP 667 P Sbjct: 211 LP 212
>A3PF41:RS3_PROM0 30S ribosomal protein S3 - Prochlorococcus marinus (strain MIT| 9301) Length = 243 Score = 48.9 bits (115), Expect = 3e-05 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 1/182 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + ++ G G + V I + E+ ++ R ++G +G I EL S +QK Sbjct: 38 KIRTFIQKKYGAAGISDVLIARKADQLELELKTARPGVIVGRQGSGIEELRSGIQKTIGD 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + +V A AE + +L +A RR L+ +G G ++ V Sbjct: 98 RTRQVRINVVEVERVDADAFLLAEYIAQQLEKRVAFRRTIRMALQRAQRAGVLGLKIQVG 157 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ ++G + H + ID A R GVLGIKV W KG+ Sbjct: 158 GRLNGAEIARTEWTREGRVPL--HTLRAEIDYATREANTTYGVLGIKV-----WVFKGEV 210 Query: 662 GP 667 P Sbjct: 211 LP 212
>A0ALW2:RS3_LISW6 30S ribosomal protein S3 - Listeria welshimeri serovar 6b (strain| ATCC 35897 / DSM 20650 / SLCC5334) Length = 218 Score = 48.9 bits (115), Expect = 3e-05 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI----RELTSVVQKR 295 + + + + L + + VEI R I I + V+G+ G + + L + QKR Sbjct: 38 IRDYVAKRLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKR 97 Query: 296 FNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEV 475 V + ++ L A AE++ +L G ++ RRA ++ M +GAKG + Sbjct: 98 -------VHINIVEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKT 150 Query: 476 IVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 VSG+L A A++ + +G + H + ID A G LG+KV I Sbjct: 151 QVSGRLGGADIARAEHYSEGTV--PLHTLRADIDYAWEEADTTYGKLGVKVWI 201
>P66548:RS3_LISMO 30S ribosomal protein S3 - Listeria monocytogenes| Length = 218 Score = 48.9 bits (115), Expect = 3e-05 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI----RELTSVVQKR 295 + + + + L + + VEI R I I + V+G+ G + + L + QKR Sbjct: 38 IRDYVAKRLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKR 97 Query: 296 FNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEV 475 V + ++ L A AE++ +L G ++ RRA ++ M +GAKG + Sbjct: 98 -------VHINIVEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKT 150 Query: 476 IVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 VSG+L A A++ + +G + H + ID A G LG+KV I Sbjct: 151 QVSGRLGGADIARAEHYSEGTV--PLHTLRADIDYAWEEADTTYGKLGVKVWI 201
>Q71WF2:RS3_LISMF 30S ribosomal protein S3 - Listeria monocytogenes serotype 4b| (strain F2365) Length = 218 Score = 48.9 bits (115), Expect = 3e-05 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI----RELTSVVQKR 295 + + + + L + + VEI R I I + V+G+ G + + L + QKR Sbjct: 38 IRDYVAKRLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKR 97 Query: 296 FNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEV 475 V + ++ L A AE++ +L G ++ RRA ++ M +GAKG + Sbjct: 98 -------VHINIVEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKT 150 Query: 476 IVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 VSG+L A A++ + +G + H + ID A G LG+KV I Sbjct: 151 QVSGRLGGADIARAEHYSEGTV--PLHTLRADIDYAWEEADTTYGKLGVKVWI 201
>P66549:RS3_LISIN 30S ribosomal protein S3 - Listeria innocua| Length = 218 Score = 48.9 bits (115), Expect = 3e-05 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 5/173 (2%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRI----RELTSVVQKR 295 + + + + L + + VEI R I I + V+G+ G + + L + QKR Sbjct: 38 IRDYVAKRLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKR 97 Query: 296 FNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEV 475 V + ++ L A AE++ +L G ++ RRA ++ M +GAKG + Sbjct: 98 -------VHINIVEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKT 150 Query: 476 IVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 VSG+L A A++ + +G + H + ID A G LG+KV I Sbjct: 151 QVSGRLGGADIARAEHYSEGTV--PLHTLRADIDYAWEEADTTYGKLGVKVWI 201
>Q2SU33:RS3_BURTA 30S ribosomal protein S3 - Burkholderia thailandensis (strain E264| / ATCC 700388 / DSM 13276 / CIP 106301) Length = 266 Score = 48.9 bits (115), Expect = 3e-05 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVIIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A GV+G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGVIGVKV 200
>Q63Q17:RS3_BURPS 30S ribosomal protein S3 - Burkholderia pseudomallei (Pseudomonas| pseudomallei) Length = 266 Score = 48.9 bits (115), Expect = 3e-05 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>Q3JMR9:RS3_BURP1 30S ribosomal protein S3 - Burkholderia pseudomallei (strain 1710b)| Length = 266 Score = 48.9 bits (115), Expect = 3e-05 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>A3P0A7:RS3_BURP0 30S ribosomal protein S3 - Burkholderia pseudomallei (strain 1106a)| Length = 266 Score = 48.9 bits (115), Expect = 3e-05 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>Q62GL1:RS3_BURMA 30S ribosomal protein S3 - Burkholderia mallei (Pseudomonas mallei)| Length = 266 Score = 48.9 bits (115), Expect = 3e-05 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%) Frame = +2 Query: 128 LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP 307 + E L ++L V I I I ++R V+G+KG I L + +Q+R P Sbjct: 39 VREYLKKKLKNASVGRVVIERPAKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVP 98 Query: 308 DGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSG 487 V + E++ A A+S+ +L + RRA ++ M GA+G +++ +G Sbjct: 99 ---VHVNIEEIRKPETDAQLIADSITQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAG 155 Query: 488 KLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 +L + A++ +++G + H + ID A G++G+KV Sbjct: 156 RLNGIEIARTEWYREGRV--PLHTLRADIDYATSEAKTTYGIIGVKV 200
>A2BYT0:RS3_PROM5 30S ribosomal protein S3 - Prochlorococcus marinus (strain MIT| 9515) Length = 244 Score = 48.5 bits (114), Expect = 4e-05 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 1/182 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + ++ G + V I + E+ ++ R ++G +G I EL S +QK Sbjct: 38 KIRNFIQKKYSSAGISDVLIARKADQLELELKTARPGVIVGRQGSGIEELRSGIQKTIGD 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + +V A AE + +L +A RR L+ +G G ++ V Sbjct: 98 RTRQVRINVVEVERVDADAYLLAEYIAQQLEKRVAFRRTIRMALQRAQRAGVLGLKIQVG 157 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A+S ++G + H + +D A+R GVLGIKV W KG+ Sbjct: 158 GRLNGAEIARSEWTREGRVPL--HTLRAEVDYALREANTTYGVLGIKV-----WVFKGEV 210 Query: 662 GP 667 P Sbjct: 211 LP 212
>Q03EC2:RS3_PEDPA 30S ribosomal protein S3 - Pediococcus pentosaceus (strain ATCC| 25745 / 183-1w) Length = 223 Score = 48.5 bits (114), Expect = 4e-05 Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 1/180 (0%) Frame = +2 Query: 95 KFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 KF+A+ + ++ E + ++L + + VEI R I I + V+G+ G + +L Sbjct: 30 KFLAEDI---KIREFIAKQLTDASVSTVEIERAANRVNISIHTAKPGMVIGKGGSEVEKL 86 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 + + + V + ++ L A E++ +L G +A RRA ++ M S Sbjct: 87 RNQLNQ---LTGKRVHINIVEIKKPDLEAKLVGENIAAQLEGRVAFRRAMKQAMQRSMRS 143 Query: 455 GAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 GAKG + V+G+L A ++ ++ +G + H + +D A G LG+K I Sbjct: 144 GAKGIKTQVAGRLNGADMSRVERYSEGKV--PLHTLRADVDYAWVEARTTYGQLGVKTWI 201
>Q3SSW0:RS3_NITWN 30S ribosomal protein S3 - Nitrobacter winogradskyi (strain Nb-255| / ATCC 25391) Length = 231 Score = 48.5 bits (114), Expect = 4e-05 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E+L +EL + A + I + + I + R V+G+KG I +L V + Sbjct: 38 KIRELLHKELKQAAVARIVIERPHKKCRVTIHSARPGVVIGKKGADIDKLRKRVA---DI 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V L ++ L A AES+ +L +A RRA ++ M GA+G + S Sbjct: 95 TSSDVVLNIVEIRKPELDATLVAESIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + +D V G G+KV I +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADVDYGVATAFTTFGTCGVKVWIFKGEILEHDP 212
>Q605B8:RS3_METCA 30S ribosomal protein S3 - Methylococcus capsulatus| Length = 223 Score = 48.5 bits (114), Expect = 4e-05 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + ++I +I I R V+G++G I L V + Sbjct: 38 KVREFLKQKLKHASVSRIQINRLANNAQITIHTARPGIVIGKRGEDIDALRRDVSRFMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V++ E++ L A AE + +L + RRA ++ + GA+G ++ V+ Sbjct: 98 P---VQVSVEEIRKPELDAQLVAEGVAQQLEKRIMFRRAMKRAVQNTLRVGAEGIKISVA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H ID + GV+G+KV I Sbjct: 155 GRLNGAEIARTEWYREGRV--PLHTFRADIDYGFAEAVTTYGVIGVKVWI 202
>Q1LTD2:RS3_BAUCH 30S ribosomal protein S3 - Baumannia cicadellinicola (subsp.| Homalodisca coagulata) Length = 233 Score = 48.5 bits (114), Expect = 4e-05 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 3/198 (1%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L EL + + V I I I R ++G+KG + +L + Sbjct: 38 KVRQFLASELTKASISRVVIERPAKSIRITIHTARPGIIIGKKGEDVEKLRKSISLIAGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ +V L A AES+ ++ + RRA ++ + GAKG +V VS Sbjct: 98 PS---QINIAEVRKPELNAKLVAESIVSQIERRVIFRRAMKRAVQNTIRLGAKGIKVEVS 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGK- 658 G+L + A++ +++G + H + ID V GV+G+KV W KG+ Sbjct: 155 GRLSGVEIARTEWYREGRV--PLHTLRADIDYHVSEAHTTYGVIGVKV-----WIFKGEI 207 Query: 659 -QGPATPLPDLVTIHPPK 709 G P + +I PPK Sbjct: 208 LDGMMAVEPTIESITPPK 225
>Q5P326:RS3_AZOSE 30S ribosomal protein S3 - Azoarcus sp. (strain EbN1) (Aromatoleum| aromaticum (strain EbN1)) Length = 278 Score = 48.5 bits (114), Expect = 4e-05 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 1/179 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L + L V I I + + R V+G+KG I L +QK Sbjct: 38 KVRDFLKKRLAHASVGRVVIERPAKNARITLFSARPGVVIGKKGEDIELLKRELQKIMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ + Sbjct: 98 P---VHVNIEEVRKPEVDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSA 154 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGK 658 G+L A+ A++ +++G + H + ID V G++GIKV W KG+ Sbjct: 155 GRLNGAEIARTEWYREGRV--PLHTLRADIDYGVSEAKTTYGIIGIKV-----WVYKGE 206
>Q8UE24:RS3_AGRT5 30S ribosomal protein S3 - Agrobacterium tumefaciens (strain C58 /| ATCC 33970) Length = 243 Score = 48.5 bits (114), Expect = 4e-05 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L +EL + G A V I + + I + R ++G+KG I +L + + N Sbjct: 38 KIRAYLIKELKQAGIAKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G ++ Sbjct: 97 --SETHLNIVEVRKPEIDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCG 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A++ +++G + H + ID G+ GIKV I +L+ DP Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYGTAEAETAFGICGIKVWIFKGEILEHDP 212 Query: 650 KGK---------QGPAT 673 QGPA+ Sbjct: 213 MASERRGLEGDAQGPAS 229
>A1W2R3:RS3_ACISJ 30S ribosomal protein S3 - Acidovorax sp. (strain JS42)| Length = 288 Score = 48.5 bits (114), Expect = 4e-05 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 1/197 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L +L + + I I I + R V+G+KG I L + R Sbjct: 38 KVREYLKAKLKNAAVSRILIERPAKNARITIFSARPGVVIGKKGEDIENLKKELATRLGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S Sbjct: 98 P---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154 Query: 485 GKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L + A++ +++G + H + ID GV+G+KV W KG Sbjct: 155 GRLNGIEIARTEWYREGRV--PLHTLRADIDYGTSEAKTTYGVIGVKV-----WVYKGDT 207 Query: 662 GPATPLPDLVTIHPPKD 712 LP T P ++ Sbjct: 208 LGRNDLPAAETPRPEEE 224
>Q0I099:RS3_SHESR 30S ribosomal protein S3 - Shewanella sp. (strain MR-7)| Length = 230 Score = 48.1 bits (113), Expect = 5e-05 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 1/181 (0%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 RK++AD + A +++++ + IRVT I R V+G+KG + Sbjct: 40 RKYLADKLQAASVSKIVIERPAKS------IRVT-------IHTARPGVVIGKKGEDVEV 86 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 L + V K P ++ ++ L A A+S+ +L + RRA ++ M Sbjct: 87 LRAAVSKLAGTP---AQINIAEIRKPELDAKLVADSIAQQLERRVMFRRAMKRAVQNAMR 143 Query: 452 SGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 GA+G +V VSG+L A+ A+S +++G + H + ID + + GV+GIKV Sbjct: 144 IGAQGIKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYSTSESHTQYGVIGIKVW 201 Query: 629 I 631 I Sbjct: 202 I 202
>Q0HNT1:RS3_SHESM 30S ribosomal protein S3 - Shewanella sp. (strain MR-4)| Length = 230 Score = 48.1 bits (113), Expect = 5e-05 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 1/181 (0%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 RK++AD + A +++++ + IRVT I R V+G+KG + Sbjct: 40 RKYLADKLQAASVSKIVIERPAKS------IRVT-------IHTARPGVVIGKKGEDVEV 86 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 L + V K P ++ ++ L A A+S+ +L + RRA ++ M Sbjct: 87 LRAAVSKLAGTP---AQINIAEIRKPELDAKLVADSIAQQLERRVMFRRAMKRAVQNAMR 143 Query: 452 SGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 GA+G +V VSG+L A+ A+S +++G + H + ID + + GV+GIKV Sbjct: 144 IGAQGIKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYSTSESHTQYGVIGIKVW 201 Query: 629 I 631 I Sbjct: 202 I 202
>A0KRN0:RS3_SHESA 30S ribosomal protein S3 - Shewanella sp. (strain ANA-3)| Length = 230 Score = 48.1 bits (113), Expect = 5e-05 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 1/181 (0%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 RK++AD + A +++++ + IRVT I R V+G+KG + Sbjct: 40 RKYLADKLQAASVSKIVIERPAKS------IRVT-------IHTARPGVVIGKKGEDVEV 86 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 L + V K P ++ ++ L A A+S+ +L + RRA ++ M Sbjct: 87 LRAAVSKLAGTP---AQINIAEIRKPELDAKLVADSIAQQLERRVMFRRAMKRAVQNAMR 143 Query: 452 SGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 GA+G +V VSG+L A+ A+S +++G + H + ID + + GV+GIKV Sbjct: 144 IGAQGIKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYSTSESHTQYGVIGIKVW 201 Query: 629 I 631 I Sbjct: 202 I 202
>P59183:RS3_SHEON 30S ribosomal protein S3 - Shewanella oneidensis| Length = 230 Score = 48.1 bits (113), Expect = 5e-05 Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 1/181 (0%) Frame = +2 Query: 92 RKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRE 271 RK++AD + A +++++ + IRVT I R V+G+KG + Sbjct: 40 RKYLADKLQAASVSKIVIERPAKS------IRVT-------IHTARPGVVIGKKGEDVEV 86 Query: 272 LTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVME 451 L + V K P ++ ++ L A A+S+ +L + RRA ++ M Sbjct: 87 LRAAVSKLAGTP---AQINIAEIRKPELDAKLVADSIAQQLERRVMFRRAMKRAVQNAMR 143 Query: 452 SGAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVK 628 GA+G +V VSG+L A+ A+S +++G + H + ID + + GV+GIKV Sbjct: 144 IGAQGIKVEVSGRLGGAEIARSEWYREGRV--PLHTLRADIDYSTSESHTQYGVIGIKVW 201 Query: 629 I 631 I Sbjct: 202 I 202
>Q6N4U0:RS3_RHOPA 30S ribosomal protein S3 - Rhodopseudomonas palustris| Length = 235 Score = 48.1 bits (113), Expect = 5e-05 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E+L +EL + A + I + + I + R V+G+KG I +L V + Sbjct: 38 KIREILHKELKQAAVARIVIERPHKKCRVTIHSARPGVVIGKKGADIDKLRKKVA---DI 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + ++ L A AES+ +L +A RRA ++ M GA+G + S Sbjct: 95 TSSDVVINIVEIRKPELDATLVAESIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID V G G+KV I +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGVATAFTTFGTCGVKVWIFKGEILEHDP 212
>Q92QG4:RS3_RHIME 30S ribosomal protein S3 - Rhizobium meliloti (Sinorhizobium| meliloti) Length = 237 Score = 48.1 bits (113), Expect = 5e-05 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 5/188 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ L EL G A V I + + I + R ++G+KG I +L + + N Sbjct: 38 KIRAYLMEELKSAGIAKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G ++ + Sbjct: 97 --SETHLNIVEVRKPEVDATLVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCA 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A++ +++G + H + ID G+ G+KV I +L+ DP Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYGTAEAETAFGICGVKVWIFKGEILEHDP 212 Query: 650 KGKQGPAT 673 + AT Sbjct: 213 MASERRAT 220
>Q11QB8:RS3_CYTH3 30S ribosomal protein S3 - Cytophaga hutchinsonii (strain ATCC| 33406 / NCIMB 9469) Length = 254 Score = 48.1 bits (113), Expect = 5e-05 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + + + + G + + I T R + I R V+G+ G + ++ ++K Sbjct: 37 QIRKYVLARIPKGGISKIVIERTIKRVTLTINTARPGVVIGKGGAEVDKIKEELKK---I 93 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V++ ++ + A+ ES+ +L ++ RRA + M GA G ++ +S Sbjct: 94 TGKDVQINIFEIKRPEMEALLVGESIAQQLKARISYRRAMKQAIAGTMRVGALGIKIKLS 153 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ ++K+G + H + ID AV L G +GIKV I Sbjct: 154 GRLGGAEMARTDQYKEGRI--PLHTLRADIDYAVSEALTVYGKIGIKVWI 201
>A1BJ28:RS3_CHLPD 30S ribosomal protein S3 - Chlorobium phaeobacteroides (strain DSM| 266) Length = 250 Score = 48.1 bits (113), Expect = 5e-05 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 1/189 (0%) Frame = +2 Query: 95 KFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 K D V + L RE + G A + I T +I I A R V+G KG I L Sbjct: 32 KIKQDHVIRNYVQARLKRE--KAGIARIVIERTTKHIKINIYAARPGAVVGRKGEEINNL 89 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 + Q+ V++ +V+ A E++ Y+L ++ RRA ++ M + Sbjct: 90 S---QELSRITGKEVKIDVVEVIKPETEAQLIGENIAYQLENRVSFRRAMKQAIQQAMRA 146 Query: 455 GAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 GA+G + +G+L A+ A++ ++K+G + H + +D A G +GIKV Sbjct: 147 GAEGIRIRCAGRLGGAEIARAEQYKEGKI--PLHTIRANVDYASVTAHTIAGTIGIKV-- 202 Query: 632 MLDWDPKGK 658 W KG+ Sbjct: 203 ---WVYKGE 208
>P59180:RS3_BRUSU 30S ribosomal protein S3 - Brucella suis| Length = 236 Score = 48.1 bits (113), Expect = 5e-05 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 5/184 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E LT EL + + + I + + I + R ++G+KG I +L + + N Sbjct: 38 KIREFLTEELKQAAISKIVIERPHKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G + S Sbjct: 97 --ADTSLNIVEVRKPEVDATLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID G+ G+KV + +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGTAEAKTAYGICGVKVWVFKGEILEHDP 212 Query: 650 KGKQ 661 + Sbjct: 213 MASE 216
>Q8YHN4:RS3_BRUME 30S ribosomal protein S3 - Brucella melitensis| Length = 236 Score = 48.1 bits (113), Expect = 5e-05 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 5/184 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E LT EL + + + I + + I + R ++G+KG I +L + + N Sbjct: 38 KIREFLTEELKQAAISKIVIERPHKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G + S Sbjct: 97 --ADTSLNIVEVRKPEVDATLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID G+ G+KV + +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGTAEAKTAYGICGVKVWVFKGEILEHDP 212 Query: 650 KGKQ 661 + Sbjct: 213 MASE 216
>Q57CR4:RS3_BRUAB 30S ribosomal protein S3 - Brucella abortus| Length = 236 Score = 48.1 bits (113), Expect = 5e-05 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 5/184 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E LT EL + + + I + + I + R ++G+KG I +L + + N Sbjct: 38 KIREFLTEELKQAAISKIVIERPHKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G + S Sbjct: 97 --ADTSLNIVEVRKPEVDATLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID G+ G+KV + +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGTAEAKTAYGICGVKVWVFKGEILEHDP 212 Query: 650 KGKQ 661 + Sbjct: 213 MASE 216
>Q2YRA1:RS3_BRUA2 30S ribosomal protein S3 - Brucella abortus (strain 2308)| Length = 236 Score = 48.1 bits (113), Expect = 5e-05 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 5/184 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E LT EL + + + I + + I + R ++G+KG I +L + + N Sbjct: 38 KIREFLTEELKQAAISKIVIERPHKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTN- 96 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G + S Sbjct: 97 --ADTSLNIVEVRKPEVDATLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID G+ G+KV + +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGTAEAKTAYGICGVKVWVFKGEILEHDP 212 Query: 650 KGKQ 661 + Sbjct: 213 MASE 216
>A1R8T9:RS3_ARTAT 30S ribosomal protein S3 - Arthrobacter aurescens (strain TC1)| Length = 273 Score = 48.1 bits (113), Expect = 5e-05 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ ++++ + G A VEI T R + I R V+G +G + ++K Sbjct: 42 KIRQLMSTGMERAGIAKVEIERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEK---L 98 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V+L +V N + A A+ + +L +A RRA ++ +GAKG V S Sbjct: 99 TGKQVQLNILEVKNPEMEAQLVAQGIAEQLTSRVAFRRAMKKAMQSAQRAGAKGIRVACS 158 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ ++S +++G + H + ID G +G+KV I Sbjct: 159 GRLGGAEMSRSEFYREGRV--PLHTLRANIDYGFYEAKTTFGRIGVKVWI 206
>Q98N51:RS3_RHILO 30S ribosomal protein S3 - Rhizobium loti (Mesorhizobium loti)| Length = 241 Score = 47.8 bits (112), Expect = 7e-05 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 5/188 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + L +EL + + V I + + I A R ++G+KG I +L +K Sbjct: 38 KIRKYLEKELKQAAISKVVIERPHKKCRVTIHAARPGLIIGKKGADIEKLR---KKLMEM 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 L +V + A A+S+ +L +A RRA ++ M GA+G + S Sbjct: 95 TKSETHLNIVEVRKPEIDATLVAQSIAQQLERRIAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + +D G+ G+KV + +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADVDYGTAEANTAYGICGVKVWVFKGEILEHDP 212 Query: 650 KGKQGPAT 673 + AT Sbjct: 213 MASERRAT 220
>Q4FUF0:RS3_PSYAR 30S ribosomal protein S3 - Psychrobacter arcticum| Length = 242 Score = 47.8 bits (112), Expect = 7e-05 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E L ++L + + I +I I R V+G+KG I L + K Sbjct: 38 QVREYLRKKLDSAMISKIMIERPTGAAKITIATARPGIVIGKKGEDIERLQKELTKMMGV 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 P ++ E++ + L A AE + +L + RRA ++ M SGAKG +V +S Sbjct: 98 P---AQVNIEEITSPDLDAHLVAEGIASQLERRVMFRRAMKRAVQNSMRSGAKGIKVELS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ A++ +++G + H + ID + G +G+KV I Sbjct: 155 GRLGGAEIARTEWYREGRV--PLHTLRADIDYSSVRAETTYGTIGVKVWI 202
>Q318J0:RS3_PROM9 30S ribosomal protein S3 - Prochlorococcus marinus (strain MIT| 9312) Length = 243 Score = 47.8 bits (112), Expect = 7e-05 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 1/182 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ + ++ G G + V I + E+ ++ R ++G +G I EL + +QK Sbjct: 38 KIRTFIQKKYGAAGISDVLIARKADQLELELKTARPGVIVGRQGSGIEELRAGIQKTIGD 97 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + +V A AE + +L +A RR L+ +G G ++ V Sbjct: 98 NTRQVRINVVEVERVDADAFLLAEYISQQLEKRVAFRRTIRMALQRAQRAGVLGLKIQVG 157 Query: 485 GKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 661 G+L A+ A++ ++G + H + ID A R GVLGIKV W KG+ Sbjct: 158 GRLNGAEIARTEWTREGRVPL--HTLRAEIDYATREANTTYGVLGIKV-----WVFKGEV 210 Query: 662 GP 667 P Sbjct: 211 LP 212
>Q3B6F6:RS3_PELLD 30S ribosomal protein S3 - Pelodictyon luteolum (strain DSM 273)| (Chlorobium luteolum (strain DSM 273)) Length = 252 Score = 47.8 bits (112), Expect = 7e-05 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 1/189 (0%) Frame = +2 Query: 95 KFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 K D V + L RE + G A + I T +I I A R V+G KG I L Sbjct: 32 KIKEDHVIRNYVQTRLKRE--KAGIARIIIERTTKHIKINIYAARPGAVVGRKGEEINNL 89 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 + Q+ V++ +V+ + + ES+ Y+L ++ RRA ++ M + Sbjct: 90 S---QELGRITGKEVKIDVVEVVKPEIESQLIGESIAYQLENRVSFRRAMKMAIQQAMRA 146 Query: 455 GAKGCEVIVSGKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 GA+G + +G+L A+ A++ ++K+G + H + +D A G +GIKV Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKI--PLHTIRANVDYASVTAHTIAGTIGIKV-- 202 Query: 632 MLDWDPKGK 658 W KG+ Sbjct: 203 ---WVYKGE 208
>Q7VGD8:RS3_HELHP 30S ribosomal protein S3 - Helicobacter hepaticus| Length = 236 Score = 47.8 bits (112), Expect = 7e-05 Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 1/187 (0%) Frame = +2 Query: 74 LQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEK 253 L+ K RKF+ ++ A ++E + A +IRVT + A+R ++G+K Sbjct: 34 LEDHKIRKFLKREMYYAGVSEFIIER------AANKIRVT-------VVASRPGLIIGKK 80 Query: 254 GRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGV 433 G I + ++K + V + ++ A AE++ +L +A RRA V Sbjct: 81 GVDIDKHKEALKKILHKE---VFINIKEAKRPQANAQLAAENIATQLEKRVAFRRAMKKV 137 Query: 434 LRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGV 610 ++ M++GAKG +V VSG+L A+ A++ + +G + H + ID + G+ Sbjct: 138 MQAAMKAGAKGIKVKVSGRLAGAEMARTEWYMEGRV--PLHTLRAKIDYGFAEAMTTYGI 195 Query: 611 LGIKVKI 631 +G+KV I Sbjct: 196 IGVKVWI 202
>Q2JFH0:RS3_FRASC 30S ribosomal protein S3 - Frankia sp. (strain CcI3)| Length = 315 Score = 47.8 bits (112), Expect = 7e-05 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ +M++R + G + V+I T R + I R V+G +G + ++K Sbjct: 37 KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---L 93 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V+L +V N + A A+ + +L ++ RRA ++ M+ GAKG V S Sbjct: 94 TGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCS 153 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ ++S +++G + H + ID G +G+KV I Sbjct: 154 GRLGGAEMSRSEFYREGRV--PLHTLRADIDYGFYEARTNFGRIGVKVWI 201
>Q0RRR5:RS3_FRAAA 30S ribosomal protein S3 - Frankia alni (strain ACN14a)| Length = 350 Score = 47.8 bits (112), Expect = 7e-05 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 1/170 (0%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ +M++R + G + V+I T R + I R V+G +G + ++K Sbjct: 37 KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---L 93 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V+L +V N + A A+ + +L ++ RRA ++ M+ GAKG V S Sbjct: 94 TGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCS 153 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI 631 G+L A+ ++S +++G + H + ID G +G+KV I Sbjct: 154 GRLGGAEMSRSEFYREGRV--PLHTLRADIDYGFYEARTNFGRIGVKVWI 201
>A0PXV2:RS3_CLONN 30S ribosomal protein S3 - Clostridium novyi (strain NT)| Length = 221 Score = 47.8 bits (112), Expect = 7e-05 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 1/159 (0%) Frame = +2 Query: 59 FSNMALQISKKRKFVADGVFLAELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQN 238 F++ ++ K RKFV + A G A +EI T R +I I + Sbjct: 29 FADNLIEDDKIRKFVKKRSYSA-------------GIAKIEIERTAKRVKINIHTGKPGM 75 Query: 239 VLGEKGRRIRELTSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRR 418 ++G+ G+ I EL S + K + V + +V A AE++ +L ++ RR Sbjct: 76 IIGKGGKGIEELKSEILKMIK--EKNVIINIVEVKRPETDAQLMAENVAQQLEKRISFRR 133 Query: 419 ACYGVLRFVMESGAKGCEVIVSGKL-RAQRAKSMKFKDG 532 A ++ M SGAKG + SG+L A+ A++ ++ +G Sbjct: 134 AMKQTIQRAMRSGAKGVKTACSGRLGGAEIARTEQYHEG 172
>A4YSJ8:RS3_BRASO 30S ribosomal protein S3 - Bradyrhizobium sp. (strain ORS278)| Length = 236 Score = 47.8 bits (112), Expect = 7e-05 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E+L +EL + A + I + + I + R V+G+KG I +L V + Sbjct: 38 KIREILHKELKQAAVARIVIERPHKKCRVTIHSARPGVVIGKKGADIDKLRKRVA---DI 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + ++ L A AES+ +L +A RRA ++ M GA+G + S Sbjct: 95 TSSDVVINIVEIRKPELDATLVAESIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID V G G+KV I +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGVATAFTTFGTCGVKVWIFKGEILEHDP 212
>Q89J90:RS3_BRAJA 30S ribosomal protein S3 - Bradyrhizobium japonicum| Length = 241 Score = 47.8 bits (112), Expect = 7e-05 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%) Frame = +2 Query: 125 ELNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNF 304 ++ E+L +EL + A + I + + I + R V+G+KG I +L V + Sbjct: 38 KIREILHKELKQAAVARIVIERPHKKCRVTIHSARPGVVIGKKGADIDKLRKRVA---DI 94 Query: 305 PDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVS 484 V + ++ L A AES+ +L +A RRA ++ M GA+G + S Sbjct: 95 TSSDVVINIVEIRKPELDATLVAESIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCS 154 Query: 485 GKL-RAQRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKVKI----MLDWDP 649 G+L A+ A+ +++G + H + ID V G G+KV I +L+ DP Sbjct: 155 GRLGGAEIARMEWYREGRV--PLHTLRADIDYGVATAFTTFGTCGVKVWIFKGEILEHDP 212
>Q7VTC7:RS3_BORPE 30S ribosomal protein S3 - Bordetella pertussis| Length = 263 Score = 47.8 bits (112), Expect = 7e-05 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Frame = +2 Query: 104 ADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 A G LAE + E L ++L V I I + + R V+G++G I L Sbjct: 28 AFGTMLAEDIRVREYLKKKLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENL 87 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 + +Q+ P V + E++ A A+S+ +L + RRA ++ M Sbjct: 88 KADLQRLMGVP---VHVNIEEIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRL 144 Query: 455 GAKGCEVIVSGKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 GA+G +++ SG+L + A++ +++G + H + ID GV+GIKV Sbjct: 145 GAQGIKIMSSGRLNGIEIARTEWYREGRV--PLHTLKANIDYGTSEAHTTYGVIGIKV 200
>Q7W2F0:RS3_BORPA 30S ribosomal protein S3 - Bordetella parapertussis| Length = 263 Score = 47.8 bits (112), Expect = 7e-05 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Frame = +2 Query: 104 ADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 A G LAE + E L ++L V I I + + R V+G++G I L Sbjct: 28 AFGTMLAEDIRVREYLKKKLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENL 87 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 + +Q+ P V + E++ A A+S+ +L + RRA ++ M Sbjct: 88 KADLQRLMGVP---VHVNIEEIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRL 144 Query: 455 GAKGCEVIVSGKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 GA+G +++ SG+L + A++ +++G + H + ID GV+GIKV Sbjct: 145 GAQGIKIMSSGRLNGIEIARTEWYREGRV--PLHTLKANIDYGTSEAHTTYGVIGIKV 200
>Q7WRB9:RS3_BORBR 30S ribosomal protein S3 - Bordetella bronchiseptica (Alcaligenes| bronchisepticus) Length = 263 Score = 47.8 bits (112), Expect = 7e-05 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 4/178 (2%) Frame = +2 Query: 104 ADGVFLAE---LNEMLTRELGEDGFAGVEIRVTPMRTEIIIRATRTQNVLGEKGRRIREL 274 A G LAE + E L ++L V I I + + R V+G++G I L Sbjct: 28 AFGTMLAEDIRVREYLKKKLKSASVGRVIIERPAKNARITVYSARPGVVIGKRGEDIENL 87 Query: 275 TSVVQKRFNFPDGGVELYAEKVLNRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMES 454 + +Q+ P V + E++ A A+S+ +L + RRA ++ M Sbjct: 88 KADLQRLMGVP---VHVNIEEIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRL 144 Query: 455 GAKGCEVIVSGKLRA-QRAKSMKFKDGYMISSGHPVNQYIDGAVRHVLLRQGVLGIKV 625 GA+G +++ SG+L + A++ +++G + H + ID GV+GIKV Sbjct: 145 GAQGIKIMSSGRLNGIEIARTEWYREGRV--PLHTLKANIDYGTSEAHTTYGVIGIKV 200 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 140,060,913 Number of extensions: 2770595 Number of successful extensions: 10309 Number of sequences better than 10.0: 535 Number of HSP's gapped: 9993 Number of HSP's successfully gapped: 535 Length of query: 318 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 205 Effective length of database: 69,691,104 Effective search space: 14286676320 Effective search space used: 14286676320 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
