>P24068:OCS1_MAIZE Ocs element-binding factor 1 - Zea mays (Maize)|
          Length = 151
 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 31/87 (35%), Positives = 43/87 (49%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTALMXXXXXXXXXXNRVLSADARY 181
           +R SARRSR+++QQ    L    A+L+ DN  +      +          N VL A A  
Sbjct: 34  NRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAE 93

Query: 182 LYSLLEQQNSQLRVLGELAGVPMDVQE 262
           L   L   N  LR++ E +GV MD+QE
Sbjct: 94  LGDRLRSVNEVLRLVEEFSGVAMDIQE 120

>P12959:OP2_MAIZE Regulatory protein opaque-2 - Zea mays (Maize)|
          Length = 453

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTALMXXXXXXXXXXNRVLSADARY 181
           +R SARRSR ++      L  + AQL+ +N  +    A +          NRVL AD   
Sbjct: 235 NRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAALNQKYNDANVDNRVLRADMET 294

Query: 182 LYSLLEQ-QNSQLRVLGELAGVP 247
           L + ++  ++S  RV+   + VP
Sbjct: 295 LRAKVKMGEDSLKRVIEMSSSVP 317

>P41224:TEF_RAT Thyrotroph embryonic factor - Rattus norvegicus (Rat)|
          Length = 301

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTA 115
           + ++A+RSR  R+ +E  +T RAA LE +N A+R   A
Sbjct: 241 NNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 278

>P97516:TEF_PHOSU Thyrotroph embryonic factor - Phodopus sungorus (Striped|
           hairy-footed hamster) (Djungarian hamster)
          Length = 221

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTA 115
           + ++A+RSR  R+ +E  +T RAA LE +N A+R   A
Sbjct: 183 NNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 220

>Q9JLC6:TEF_MOUSE Thyrotroph embryonic factor - Mus musculus (Mouse)|
          Length = 301

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTA 115
           + ++A+RSR  R+ +E  +T RAA LE +N A+R   A
Sbjct: 241 NNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 278

>Q10587:TEF_HUMAN Thyrotroph embryonic factor - Homo sapiens (Human)|
          Length = 303

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTA 115
           + ++A+RSR  R+ +E  +T RAA LE +N A+R   A
Sbjct: 243 NNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 280

>Q92172:TEF_CHICK Transcription factor VBP - Gallus gallus (Chicken)|
          Length = 319

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTA 115
           + ++A+RSR  R+ +E  +T RAA LE +N A+R   A
Sbjct: 253 NNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVA 290

>Q9U297:JHD2_CAEEL JmjC domain-containing histone demethylation protein 2 -|
           Caenorhabditis elegans
          Length = 894

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 165 LRTLATCTAFWSSRTPSSACSGSSPAF----RWTCRKSPSTSRSC 287
           + + AT T F SSR PS  C+ S P F     +T   S ++S SC
Sbjct: 1   MASAATTTHFPSSRIPSEPCASSGPLFPDDVLFTTEASSASSSSC 45

>Q99090:CPRF2_PETCR Light-inducible protein CPRF-2 - Petroselinum crispum (Parsley)|
           (Petroselinum hortense)
          Length = 401

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 2   DRLSARRSRVKRQQREGSLTARAAQLEIDNEAMRVTTALMXXXXXXXXXXNRVLSAD 172
           +R SARRSR ++Q     L  + +QL ++N ++      +          NRVL AD
Sbjct: 208 NRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKAD 264


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 84,923,447
Number of extensions: 1511519
Number of successful extensions: 4030
Number of sequences better than 10.0: 9
Number of HSP's gapped: 4029
Number of HSP's successfully gapped: 9
Length of query: 203
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 95
Effective length of database: 71,062,579
Effective search space: 6750945005
Effective search space used: 6750945005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)