| Clone Name | FLbaf88n03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 ctgcagtcgccactggcgccgc 317 |||||||||||||||||||||| Sbjct: 4520389 ctgcagtcgccactggcgccgc 4520410
>gb|AE011957.1| Xanthomonas axonopodis pv. citri str. 306, section 335 of 469 of the complete genome Length = 10393 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 cagctccgcgtgctcggggagc 233 |||||||||||||||||||||| Sbjct: 9693 cagctccgcgtgctcggggagc 9714
>emb|AL137779.6|CNS01DWM Human chromosome 14 DNA sequence BAC C-2017C7 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 189116 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 ggagcagcagaactcccagctc 217 |||||||||||||||||||||| Sbjct: 159202 ggagcagcagaactcccagctc 159181
>emb|AL355032.6|CNS05TC3 Human chromosome 14 DNA sequence BAC R-796G6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 203108 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 196 ggagcagcagaactcccagctc 217 |||||||||||||||||||||| Sbjct: 17503 ggagcagcagaactcccagctc 17482
>gb|AC115954.11| Mus musculus chromosome 16, clone RP24-62P21, complete sequence Length = 205819 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 448 gtgtttgtgtggtactggtagtgtg 472 |||||||||||||||||| |||||| Sbjct: 174299 gtgtttgtgtggtactggaagtgtg 174275
>emb|AL590559.3| Human DNA sequence from clone RP11-393N21 on chromosome 1 Contains the 5' end of the gene for PAI-1 mRNA-binding protein (PAI-RBP1), a poly(A) binding protein, cytoplasmic 4 (PABPC4) pseudogene, a novel gene and a CpG island, complete sequence Length = 150651 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 422 ttatcatattgtgtgtaatgtaatgcgtgtttgtgtg 458 |||||||| |||||||||||| ||| |||| |||||| Sbjct: 133963 ttatcataatgtgtgtaatgtgatgtgtgtgtgtgtg 133927
>gb|AC026355.13| Homo sapiens 3 BAC RP11-114M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157439 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 413 gggagcatattatcatattgt 433 ||||||||||||||||||||| Sbjct: 37379 gggagcatattatcatattgt 37399
>gb|AC154348.1| Mus musculus BAC clone RP24-531G19 from 16, complete sequence Length = 139363 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 448 gtgtttgtgtggtactggtagtgtg 472 |||||||||||||||||| |||||| Sbjct: 136717 gtgtttgtgtggtactggaagtgtg 136741
>gb|AC187127.3| Pan troglodytes BAC clone CH251-121F11 from chromosome unknown, complete sequence Length = 189226 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cctggtccagcagcagaacc 155 |||||||||||||||||||| Sbjct: 23100 cctggtccagcagcagaacc 23119
>gb|BC125469.1| Mus musculus LIM homeobox transcription factor 1 beta, mRNA (cDNA clone MGC:159172 IMAGE:40129984), complete cds Length = 1298 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 865 ggagcagcagaactcccagc 884
>ref|XM_001141606.1| PREDICTED: Pan troglodytes hypothetical protein LOC739919 (LOC739919), mRNA Length = 1872 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 1518 ggagcagcagaactcccagc 1537
>gb|BC119169.1| Mus musculus LIM homeobox transcription factor 1 beta, mRNA (cDNA clone MGC:155485 IMAGE:8733918), complete cds Length = 1297 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 865 ggagcagcagaactcccagc 884
>gb|BC113491.1| Homo sapiens LIM homeobox transcription factor 1, beta, mRNA (cDNA clone MGC:142051 IMAGE:8322543), complete cds Length = 1267 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 836 ggagcagcagaactcccagc 855
>ref|XM_001097412.1| PREDICTED: Macaca mulatta LIM homeobox transcription factor 1, beta, transcript variant 2 (LMX1B), mRNA Length = 1243 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 836 ggagcagcagaactcccagc 855
>ref|XM_001097306.1| PREDICTED: Macaca mulatta LIM homeobox transcription factor 1, beta, transcript variant 1 (LMX1B), mRNA Length = 1209 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 855 ggagcagcagaactcccagc 874
>gb|DQ213461.1| Taeniopygia guttata clone 0058P0021B05 activin beta B-like mRNA, complete sequence Length = 1315 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 caggaaatccccgtccacct 276 |||||||||||||||||||| Sbjct: 162 caggaaatccccgtccacct 143
>gb|DQ213460.1| Taeniopygia guttata clone 0058P0005H10 activin beta B-like mRNA, complete sequence Length = 1314 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 caggaaatccccgtccacct 276 |||||||||||||||||||| Sbjct: 162 caggaaatccccgtccacct 143
>ref|XM_609798.2| PREDICTED: Bos taurus similar to LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2) (LOC531306), mRNA Length = 948 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 594 ggagcagcagaactcccagc 613
>gb|BC069588.1| Homo sapiens LIM homeobox transcription factor 1, beta, mRNA (cDNA clone IMAGE:7262466), partial cds Length = 1135 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 781 ggagcagcagaactcccagc 800
>gb|DQ002406.1| Zea mays copia retrotransposon ji and helitron Mo17_14577, complete sequence Length = 92777 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 gaactcccagctccgcgtgctcgg 228 |||||||||||||||| ||||||| Sbjct: 83206 gaactcccagctccgcctgctcgg 83183
>ref|XM_537841.2| PREDICTED: Canis familiaris LMX1B protein (LMX1B), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 1110 ggagcagcagaactcccagc 1129
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 acgaggccatgcgcgtcacc 109 |||||||||||||||||||| Sbjct: 2489705 acgaggccatgcgcgtcacc 2489686
>gb|AC092994.4| Homo sapiens 3 BAC RP11-656A15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159445 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 cctcatgcagcagcaatgcagcct 138 |||||||| ||||||||||||||| Sbjct: 123220 cctcatgctgcagcaatgcagcct 123243
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcagcagcaatgcagcctgg 140 |||||||||||||||||||| Sbjct: 29287869 gcagcagcaatgcagcctgg 29287850
>dbj|AB221651.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis, dev_stage=adult, strain=C57BL/6J), clone:V01Y040G13 Length = 1119 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 786 ggagcagcagaactcccagc 805
>emb|AL161731.20| Human DNA sequence from clone RP11-489N22 on chromosome 9 Contains the 3' end of the LMX1B gene for LIM homeobox transcription factor 1, beta (NPS1, LMX1.2), the ZNF297B gene for zinc finger protein 297B (ZNF-X, FLJ22470, KIAA0414) and three CpG islands, complete sequence Length = 182452 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 37674 ggagcagcagaactcccagc 37693
>gb|AC024589.5| Homo sapiens chromosome 5 clone RP11-42L13, complete sequence Length = 170272 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 tcatattgtgtgtaatgtaa 444 |||||||||||||||||||| Sbjct: 121065 tcatattgtgtgtaatgtaa 121046
>ref|NM_205206.1| Gallus gallus activin beta B (LOC396126), mRNA emb|Z71594.1|GGACTBTAB G.gallus mRNA for activin beta B Length = 2274 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 caggaaatccccgtccacct 276 |||||||||||||||||||| Sbjct: 704 caggaaatccccgtccacct 685
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gctgctccagccggaccagc 365 |||||||||||||||||||| Sbjct: 902364 gctgctccagccggaccagc 902345
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcagcagcaatgcagcctgg 140 |||||||||||||||||||| Sbjct: 66732 gcagcagcaatgcagcctgg 66713
>gb|AC148592.10| Gasterosteus aculeatus clone uogacrs-1d8-1, complete sequence Length = 40753 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 atattgtgtgtaatgtaatg 446 |||||||||||||||||||| Sbjct: 39997 atattgtgtgtaatgtaatg 40016
>gb|AY215073.1| Canis familiaris LMX1B (LMX1B) mRNA, partial cds Length = 928 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 610 ggagcagcagaactcccagc 629
>emb|BX545915.7| Zebrafish DNA sequence from clone DKEY-41B16 in linkage group 3, complete sequence Length = 192468 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 cggagattcagatgctgctc 352 |||||||||||||||||||| Sbjct: 187722 cggagattcagatgctgctc 187703
>gb|BC112120.1| Homo sapiens LIM homeobox transcription factor 1, beta, mRNA (cDNA clone MGC:138325 IMAGE:8327588), complete cds Length = 1256 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 836 ggagcagcagaactcccagc 855
>gb|AC004098.1|AC004098 Homo sapiens chromosome 17, clone HCIT305D20, complete sequence Length = 166978 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cctggtccagcagcagaacc 155 |||||||||||||||||||| Sbjct: 147715 cctggtccagcagcagaacc 147734
>emb|BX005327.9| Zebrafish DNA sequence from clone DKEY-65B16 in linkage group 7, complete sequence Length = 237129 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 tgtaatgtaatgcgtgtttgtgtg 458 |||||||||||| ||||||||||| Sbjct: 187147 tgtaatgtaatgagtgtttgtgtg 187124
>emb|BX004790.9| Zebrafish DNA sequence from clone CH211-215J7 in linkage group 7, complete sequence Length = 209666 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 435 tgtaatgtaatgcgtgtttgtgtg 458 |||||||||||| ||||||||||| Sbjct: 142408 tgtaatgtaatgagtgtttgtgtg 142385
>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence Length = 52591 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 431 tgtgtgtaatgtaatgcgtgtttgtgtg 458 ||||||| ||||||||||||| |||||| Sbjct: 9584 tgtgtgtcatgtaatgcgtgtgtgtgtg 9611
>gb|BC069601.1| Homo sapiens LIM homeobox transcription factor 1, beta, mRNA (cDNA clone MGC:97142 IMAGE:7262383), complete cds Length = 1119 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 786 ggagcagcagaactcccagc 805
>ref|NM_002316.1| Homo sapiens LIM homeobox transcription factor 1, beta (LMX1B), mRNA gb|AF057135.1|AF057135 Homo sapiens LIM homeodomain protein LMX1B mRNA, complete cds Length = 1119 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 786 ggagcagcagaactcccagc 805
>emb|AL929212.8| Mouse DNA sequence from clone RP23-65G6 on chromosome 2, complete sequence Length = 255261 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 122769 ggagcagcagaactcccagc 122750
>ref|NM_010725.1| Mus musculus LIM homeobox transcription factor 1 beta (Lmx1b), mRNA gb|AF078166.1|AF078166 Mus musculus LIM homeodomain protein (Lmx1b) mRNA, complete cds Length = 1119 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 786 ggagcagcagaactcccagc 805
>gb|AF059574.1|HSLMX1B3 Homo sapiens LIM homeodomain protein (LMX1B) gene, exons 4, 5, and 6 Length = 1081 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 892 ggagcagcagaactcccagc 911
>gb|AF055478.1|AF055478 Gallus gallus inhibin/activin beta B subunit precursor, mRNA, complete cds Length = 1995 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 caggaaatccccgtccacct 276 |||||||||||||||||||| Sbjct: 445 caggaaatccccgtccacct 426
>gb|U61141.1|MAU61141 Mesocricetus auratus LIM-homeodomain protein mRNA, partial cds Length = 1421 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ggagcagcagaactcccagc 215 |||||||||||||||||||| Sbjct: 756 ggagcagcagaactcccagc 775
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tcgctacctgtacagccttc 194 |||||||||||||||||||| Sbjct: 5489085 tcgctacctgtacagccttc 5489104 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 92,952,681 Number of extensions: 4978945 Number of successful extensions: 97161 Number of sequences better than 10.0: 46 Number of HSP's gapped: 97161 Number of HSP's successfully gapped: 46 Length of query: 609 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 587 Effective length of database: 18,508,616,841 Effective search space: 10864558085667 Effective search space used: 10864558085667 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)